CX300731

Overview
NameCX300731
Unique NameCX300731
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length470
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBB1_COLGR (Tubulin beta-1 chain OS=Colletotrichum graminicola GN=TUB1 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 6.868e-23
Identity = 53/154 (34.42%), Postives = 85/154 (55.19%), Query Frame = 3
Query:    9 YAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            +AP+ S+  A    L + E+T  +F+P N++   D R G+++ C  M+RG V  K V   +  IK K +  FV+W P   +      PP    G D++        + N+TAI  +  R+  +F LM+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  270 FAPLTSS--ASFSNLGIAELTQQMFDPKNVMLASDFRDGRFLTCSTMFRGKVSMKQVEEQIQAIKNKNSANFVEWIPNNIQTAHCSVPP---KGLDVSST-----FIGNSTAIQNSFRRVGDQFSLMFRRKAFLHWYTGEGMDEMEFTEAESNM 413          
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBB1_CHOCR (Tubulin beta-1 chain OS=Chondrus crispus GN=TUBB PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 6.868e-23
Identity = 52/154 (33.77%), Postives = 85/154 (55.19%), Query Frame = 3
Query:    9 YAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            +AP+ ++  A +  LSV E+   +F+ +NM+ + DPR G+Y+   + +RG V  K+V   +  ++TK +  FV+W P   K  +   P         A  + +   + NTTAI     R  ++F  M+ ++AF+HWY  EGM+E EFSEA  +L
Sbjct:  272 HAPLAASNSAGYRSLSVPELAGQMFDRNNMMAEIDPREGRYLTAAVYFRGKVSTKEVEDEMTLMQTKNSAYFVEWIPHNIKTSVCDIP--------AAGEKISSAFIGNTTAIEATFKRFGNQFRSMFRRKAFLHWYKSEGMDELEFSEAESNL 417          
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBB_PHANO (Tubulin beta chain OS=Phaeosphaeria nodorum GN=tubA PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 8.970e-23
Identity = 50/154 (32.47%), Postives = 84/154 (54.55%), Query Frame = 3
Query:    9 YAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            +AP+ S        ++V E+T  +F+P NM+   D R+G+Y+ C   +RG V  K+V   +  ++ K +  FV+W P   +  +   PP          ++ +   V N+T+I E   RI  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  270 FAPLTSRGAHSFRAVTVPELTQQMFDPKNMMAASDFRNGRYLTCSAYFRGKVSMKEVEDQMRNVQNKNSSYFVEWIPNNVQTALCSVPP--------RGLKMSATFVGNSTSIQELFKRIGDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415          
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBB3_SOYBN (Tubulin beta chain (Fragment) OS=Glycine max GN=TUBB PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 8.970e-23
Identity = 48/147 (32.65%), Postives = 81/147 (55.10%), Query Frame = 3
Query:    9 YAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEF 449
            +AP+ S     +  L+V E+T  +++  NM+   DPRHG+Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          ++ A   + N+T+I E   R+  +F  M+ ++AF+HWY GEGM+E EF
Sbjct:  270 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP--------KGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEF 408          
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBB_MELLI (Tubulin beta chain OS=Melampsora lini GN=TUB1 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.172e-22
Identity = 49/154 (31.82%), Postives = 88/154 (57.14%), Query Frame = 3
Query:    9 YAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            +AP+ +     +  ++V E+T+ +F+  NM+   DPRHG+Y+     +RG V  K+V   + ++++K +  FV+W P      +      + P G    ++ +V  + N+TAI +   RI  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  270 FAPLTARGSQQYRAVTVPELTSQMFDAKNMMAASDPRHGRYLTVAAYFRGKVSMKEVEENMLSVQSKNSNYFVEWIPN----NVQTAHCDIAPRG----LKMSVTFIGNSTAIQDLFKRIADQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415          
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBB1_TRIVI (Tubulin beta-1 chain OS=Trichoderma viride GN=tub1 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.172e-22
Identity = 49/154 (31.82%), Postives = 83/154 (53.90%), Query Frame = 3
Query:    9 YAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            +AP+ S        ++V E+T  + +P NM+   D R+G+Y+ C  ++RG V  K+V   + T++ K +  FV+W P   +      PP          ++ +   V N+TAI E   R+  +F  M+ ++AF+HWY  EGM+E EF+EA  ++
Sbjct:  272 FAPLTSPGAHSFRAVTVPELTQQMMDPKNMMAASDFRNGRYLTCSTIFRGKVAMKEVEDQMRTVQNKNSAYFVEWIPNNIQTACALSPP--------RGLKISSTFVGNSTAIQEIFRRVGEQFSAMFRRQAFLHWYTSEGMDEMEFTEAESNM 417          
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBB_YEAST (Tubulin beta chain OS=Saccharomyces cerevisiae GN=TUB2 PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 1.530e-22
Identity = 50/154 (32.47%), Postives = 85/154 (55.19%), Query Frame = 3
Query:    9 YAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            YAP+ +        L+V E+T  +F+  NM+   DPR+G+Y+     +RG V  K+V   +  +++K +  FV+W P   +  +     +V P G    +  A   ++N+T+I E   R+  +F  M+ ++AF+HWY  EGM+E EFSEA  ++
Sbjct:  270 YAPLTAIGSQSFRSLTVPELTQQMFDAKNMMAAADPRNGRYLTVAAFFRGKVSVKEVEDEMHKVQSKNSDYFVEWIPNNVQTAV----CSVAPQG----LDMAATFIANSTSIQELFKRVGDQFSAMFKRKAFLHWYTSEGMDELEFSEAESNM 415          
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBB_UNCNE (Tubulin beta chain OS=Uncinula necator PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.998e-22
Identity = 48/154 (31.17%), Postives = 85/154 (55.19%), Query Frame = 3
Query:    9 YAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            +AP+ S        ++V E+T  +++P NM+   D R+G+Y+ C  ++RG V  K+V   +  ++ K +  FV+W P   +  +   PP          ++ +   V N+T+I E   R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  270 FAPLTSRGAHSFRAVTVPELTQQMYDPKNMMAASDFRNGRYLTCSAIFRGKVSMKEVEDQMRNVQNKNSAYFVEWIPNNVQTALCSIPP--------RGLKMSSTFVGNSTSIQELFKRVGDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415          
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBB2_ERYPI (Tubulin beta-2 chain OS=Erysiphe pisi GN=TUB2 PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 1.998e-22
Identity = 48/154 (31.17%), Postives = 85/154 (55.19%), Query Frame = 3
Query:    9 YAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            +AP+ S        ++V E+T  +++P NM+   D R+G+Y+ C  ++RG V  K+V   +  ++ K +  FV+W P   +  +   PP          ++ +   V N+T+I E   R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  270 FAPLTSRGAHSFRAVTVPELTQQMYDPKNMMAASDFRNGRYLTCSAIFRGKVSMKEVEDQMRNVQNKNSAYFVEWIPNNVQTALCSIPP--------RGLKMSSTFVGNSTSIQELFKRVGDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 415          
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBB1_TRIVE (Tubulin beta-1 chain OS=Trichoderma virens PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.998e-22
Identity = 50/154 (32.47%), Postives = 84/154 (54.55%), Query Frame = 3
Query:    9 YAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            +AP+ S        +SV E+T  + +P NM+   D R+G+Y+ C  ++RG V  K+V   + +I+ K +  FV+W P   +  +   PP          ++ +   V N+TAI E   R+  +F  M+ ++AF+HWY  EGM+E EF+EA  ++
Sbjct:  270 FAPLTSPGAHSFRAVSVPELTQQMLDPKNMMAASDFRNGRYLTCSTIFRGKVAMKEVEDQMRSIQNKNSTYFVEWIPNNIQTALCSIPP--------KGLKISSTFVGNSTAIQEIFRRVGEQFTAMFRRKAFLHWYTSEGMDEMEFTEAESNM 415          
The following BLAST results are available for this feature:
BLAST of CX300731 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 379
Match NameE-valueIdentityDescription
TBB1_COLGR6.868e-2334.42Tubulin beta-1 chain OS=Colletotrichum graminicola... [more]
TBB1_CHOCR6.868e-2333.77Tubulin beta-1 chain OS=Chondrus crispus GN=TUBB P... [more]
TBB_PHANO8.970e-2332.47Tubulin beta chain OS=Phaeosphaeria nodorum GN=tub... [more]
TBB3_SOYBN8.970e-2332.65Tubulin beta chain (Fragment) OS=Glycine max GN=TU... [more]
TBB_MELLI1.172e-2231.82Tubulin beta chain OS=Melampsora lini GN=TUB1 PE=3... [more]
TBB1_TRIVI1.172e-2231.82Tubulin beta-1 chain OS=Trichoderma viride GN=tub1... [more]
TBB_YEAST1.530e-2232.47Tubulin beta chain OS=Saccharomyces cerevisiae GN=... [more]
TBB_UNCNE1.998e-2231.17Tubulin beta chain OS=Uncinula necator PE=3 SV=1[more]
TBB2_ERYPI1.998e-2231.17Tubulin beta-2 chain OS=Erysiphe pisi GN=TUB2 PE=2... [more]
TBB1_TRIVE1.998e-2232.47Tubulin beta-1 chain OS=Trichoderma virens PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionC08001F05SK PhyRootSw1 Citrus sinensis cDNA clone C08001F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300731 ID=CX300731; Name=CX300731; organism=Citrus sinensis; type=EST; length=470bp
TGACCTCATACGCTCCAATCATCTCAGCAGAGAAGGCTTACCACGAGCAA
TTATCAGTGCACGAGATCACCAACTCGGTGTTCGAGCCATCAAACATGTT
GACGAAGTGCGATCCTCGTCACGGCAAGTACATGGCTTGCTGCATGATGT
ACCGTGGTGATGTGGTGCCAAAGGATGTGAACTCTGCAGTGGCCACCATC
AAGACAAAGCGCACAGTTCAATTCGTGGACTGGTGCCCAACCGGCTTCAA
GTGCGGTATCAACTACCAGCCACCAACAGTCGTTCCAGGAGGTGACTTGG
CTCGTGTGCAACGCGCTGTATGCATGGTTTCTAACACCACCGCAATCGCC
GAGGCCTTGTCTCGTATCGACCACAAGTTCGACTTGATGTACGCCAAGCG
TGCTTTCGTGCACTGGTACGTCGGAGAAGGTATGGAGGAAGGAGAGTTCT
CCGAGGCTCGTGAGGACTTG
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