CX300731

Overview
NameCX300731
Unique NameCX300731
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length470
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBB_PLESA (Tubulin beta chain OS=Pleurotus sajor-caju PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.209e-21
Identity = 48/152 (31.58%), Postives = 81/152 (53.29%), Query Frame = 3
Query:   15 PIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            P+ +     +  ++V E+T  +F+  NM+   DPRHG+Y+    ++RG V  K+V   +  ++ K +  FV+W P          PP           + AV  + N+TAI E   R++ +F  M+ ++AF+HWY  EGM+E EF+EA  ++
Sbjct:  272 PLTARGSQQYRAVTVPELTQQMFDAKNMMAASDPRHGRYLTVAAVFRGKVSMKEVEEQMQNVQNKNSAYFVEWIPNNVLTAQCDIPP--------RGCKMAVTFLGNSTAIQELFKRVNDQFAAMFKRKAFLHWYTQEGMDEMEFTEAESNM 415          
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBB1_GEOCN (Tubulin beta-1 chain OS=Geotrichum candidum PE=3 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 2.209e-21
Identity = 46/154 (29.87%), Postives = 83/154 (53.90%), Query Frame = 3
Query:    9 YAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            YAP+ +  +     L+V E+T  +F+  NM+   DP+ G+Y+     +RG V  K+V   + +++ + +  FV+W P   +  I   PP          V+ +   ++N+T+I E   R+  +F  M+ ++AF+HWY  EGM+  EF+EA  ++
Sbjct:  270 YAPLSAPGQQSFRSLTVPELTQQLFDSKNMMAASDPKRGRYLTVAAFFRGKVSIKEVEDQMRSVQERNSAYFVEWIPNNVQTAICSVPP--------KDVKMSATFIANSTSIQELFKRVGDQFSAMFRRKAFLHWYTNEGMDITEFAEAESNM 415          
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBB_AJECA (Tubulin beta chain OS=Ajellomyces capsulata GN=TUB2 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 4.922e-21
Identity = 48/154 (31.17%), Postives = 83/154 (53.90%), Query Frame = 3
Query:    9 YAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            +AP+ S        ++V E+T  +++P NM+   D R+G+Y+    ++RG V  K+V   +  ++ K    FV+W P   +  +   PP          ++ +   V N+TAI E   R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct:  271 FAPLTSRGAYSFRVVTVPELTQKMYDPKNMMCLLDFRNGRYLTASAIFRGKVSMKEVEDQMRNVQNKNHTYFVEWIPNNVQTALCSIPPR--------GLKMSSTFVENSTAIQELFKRVGDQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNM 416          
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBB3_ANEPH (Tubulin beta-3 chain (Fragment) OS=Anemia phyllitidis GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.432e-20
Identity = 46/154 (29.87%), Postives = 81/154 (52.60%), Query Frame = 3
Query:    9 YAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            +AP+ S     +  L+V E+T  +++  NM+   DPRHG+Y+    M+RG +  K+V+  +  ++ K +  FV+W P   K  +   PP          ++ A   + N+++I E   R       M+ ++AF+HWY  EGM+E EF+E   ++
Sbjct:   66 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQLINVQNKNSSYFVEWIPNNVKSSVCDIPP--------VGLKMACTFIGNSSSIQEMFRRDATSLTAMFRRKAFLHWYTWEGMDEMEFTEEESNM 211          
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBBP_DROME (Probable tubulin beta chain CG32396 OS=Drosophila melanogaster GN=CG32396 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.340e-18
Identity = 46/154 (29.87%), Postives = 80/154 (51.95%), Query Frame = 3
Query:    9 YAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            +AP+++ ++    + +V E+   +F  +N+L   D R GK +    ++RG + P++V+  +  ++ K    FVDW P   K  I   PP          ++ +   + NTTAI     R+      M  ++A +HWY GEGMEE EF +A+++L
Sbjct:  269 FAPLVTCKQQQFSKGTVSELVQQIFYSNNLLCAIDLRKGKLLTAAGIFRGRMSPREVDQLMTGVRNKNINNFVDWIPNNIKTAICDIPP--------RGLKMSATFIGNTTAIQTLFQRLLDASMSMLRRKAHLHWYTGEGMEEQEFQDAQQEL 414          
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBG_RETFI (Tubulin gamma chain OS=Reticulomyxa filosa PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.176e-12
Identity = 42/164 (25.61%), Postives = 83/164 (50.61%), Query Frame = 3
Query:    3 TSYAP-IISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAV--CMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWY-----VGEGMEEGEFSEAREDL 470
            TS+ P +I   +   ++ SV ++   + +P N++  C  + G Y++   + RGDV P D++ ++  I+ K+ V F+ W P   +  ++ Q P        A V   V  CM++N + +    +RI   +D++  + AF++ Y       E ++  EF +A+E +
Sbjct:  270 TSFTPLVIKGAQRRIQKTSVLDVMRRLLQPKNIMVSCGTKKGVYVSILDIIRGDVDPTDIHKSLQRIREKKIVNFIPWGPASIQVALSKQSP-------YANVPYRVSGCMMANHSNLGNLFARIIRTYDILRKRNAFLNVYKETPVFSENLD--EFEDAKETI 424          
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBE_HUMAN (Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.073e-11
Identity = 39/137 (28.47%), Postives = 67/137 (48.91%), Query Frame = 3
Query:   63 EITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVG-EGMEEGEFSEAREDL 470
            ++ +  F   + L + DP+H  Y+AC +M RG+V   D+   +  +K   ++QFV W   G+K  +   PP             ++  ++N T +      +  +F  +Y K+A +H Y+  EGMEE  F+EA   L
Sbjct:  321 QMFSDAFSKDHQLLRADPKHSLYLACALMVRGNVQISDLRRNIERLKP--SLQFVSWNQEGWKTSLCSVPP--------VGHSHSLLALANNTCVKPTFMELKERFMRLYKKKAHLHHYLQVEGMEESCFTEAVSSL 447          
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBE_MOUSE (Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.536e-11
Identity = 38/137 (27.74%), Postives = 66/137 (48.18%), Query Frame = 3
Query:   63 EITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVG-EGMEEGEFSEAREDL 470
            ++ +  F   + L + DPRH  Y+AC ++ RG+V   D+   +  +K    +QFV W   G+K  +   PP             ++  ++N T +      +  +F  +Y K+A +H Y+  +GMEE  F+EA   L
Sbjct:  321 QMFSDAFSKDHQLIQADPRHSLYLACALIVRGNVQISDLRRNIERLKP--ALQFVSWNQEGWKTSLCSVPP--------VGHSHSLLALANNTCVKPTFMELRERFTRLYKKKAHLHHYLQVDGMEESTFTEAVSSL 447          
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBG_DICDI (Tubulin gamma chain OS=Dictyostelium discoideum GN=tubC PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.031e-11
Identity = 41/158 (25.95%), Postives = 79/158 (50.00%), Query Frame = 3
Query:    3 TSYAPI-ISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGME-EGEFSEAREDL 470
            T Y P+ I  +     + SV ++   + +P N++     + GKY++   + +GDV P  +++++  I+ KR   F+DW P   +  ++ + P +     ++ +     M++N T++    S I  ++D +  K+AF+  Y  E  E   EF  ARE L
Sbjct:  268 TGYTPLSIDRQTESVRKTSVLDVMRRLLQPQNIMVSAPTKTGKYISILNIIQGDVDPTQIHNSLQRIREKRMATFIDWGPASIQIALSKKSPYIKSSHKVSGL-----MLANHTSVNHLFSHIIQQYDKVRKKQAFLANYTRESGEILQEFDIAREML 420          
The following BLAST results are available for this feature:
BLAST of CX300731 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 379
Match NameE-valueIdentityDescription
TBB_PLESA2.209e-2131.58Tubulin beta chain OS=Pleurotus sajor-caju PE=2 SV... [more]
TBB1_GEOCN2.209e-2129.87Tubulin beta-1 chain OS=Geotrichum candidum PE=3 S... [more]
TBB_AJECA4.922e-2131.17Tubulin beta chain OS=Ajellomyces capsulata GN=TUB... [more]
TBB3_ANEPH1.432e-2029.87Tubulin beta-3 chain (Fragment) OS=Anemia phylliti... [more]
TBBP_DROME1.340e-1829.87Probable tubulin beta chain CG32396 OS=Drosophila ... [more]
TBG_RETFI4.176e-1225.61Tubulin gamma chain OS=Reticulomyxa filosa PE=2 SV... [more]
TBE_HUMAN2.073e-1128.47Tubulin epsilon chain OS=Homo sapiens GN=TUBE1 PE=... [more]
TBE_MOUSE3.536e-1127.74Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=... [more]
TBG_DICDI6.031e-1125.95Tubulin gamma chain OS=Dictyostelium discoideum GN... [more]

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Properties
Property NameValue
Genbank descriptionC08001F05SK PhyRootSw1 Citrus sinensis cDNA clone C08001F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300731 ID=CX300731; Name=CX300731; organism=Citrus sinensis; type=EST; length=470bp
TGACCTCATACGCTCCAATCATCTCAGCAGAGAAGGCTTACCACGAGCAA
TTATCAGTGCACGAGATCACCAACTCGGTGTTCGAGCCATCAAACATGTT
GACGAAGTGCGATCCTCGTCACGGCAAGTACATGGCTTGCTGCATGATGT
ACCGTGGTGATGTGGTGCCAAAGGATGTGAACTCTGCAGTGGCCACCATC
AAGACAAAGCGCACAGTTCAATTCGTGGACTGGTGCCCAACCGGCTTCAA
GTGCGGTATCAACTACCAGCCACCAACAGTCGTTCCAGGAGGTGACTTGG
CTCGTGTGCAACGCGCTGTATGCATGGTTTCTAACACCACCGCAATCGCC
GAGGCCTTGTCTCGTATCGACCACAAGTTCGACTTGATGTACGCCAAGCG
TGCTTTCGTGCACTGGTACGTCGGAGAAGGTATGGAGGAAGGAGAGTTCT
CCGAGGCTCGTGAGGACTTG
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