CX300731

Overview
NameCX300731
Unique NameCX300731
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length470
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBA_BOMMO (Tubulin alpha chain OS=Bombyx mori PE=2 SV=1)

HSP 1 Score: 297.745 bits (761), Expect = 1.608e-80
Identity = 136/155 (87.74%), Postives = 149/155 (96.13%), Query Frame = 3
Query:    6 SYAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            +YAP+ISAEKAYHEQLSV EITN+ FEP+N + KCDPRHGKYMACCM+YRGDVVPKDVN+A+ATIKTKRT+QFVDWCPTGFK GINYQPPTVVPGGDLA+VQRAVCM+SNTTAIAEA +R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL
Sbjct:  271 TYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 425          
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBA3_RAT (Tubulin alpha-3 chain OS=Rattus norvegicus GN=Tuba3a PE=2 SV=1)

HSP 1 Score: 297.745 bits (761), Expect = 1.608e-80
Identity = 136/155 (87.74%), Postives = 149/155 (96.13%), Query Frame = 3
Query:    6 SYAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            +YAP+ISAEKAYHEQLSV EITN+ FEP+N + KCDPRHGKYMACCM+YRGDVVPKDVN+A+ATIKTKRT+QFVDWCPTGFK GINYQPPTVVPGGDLA+VQRAVCM+SNTTAIAEA +R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL
Sbjct:  271 TYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 425          
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBA3_MOUSE (Tubulin alpha-3 chain OS=Mus musculus GN=Tuba3a PE=1 SV=1)

HSP 1 Score: 297.745 bits (761), Expect = 1.608e-80
Identity = 136/155 (87.74%), Postives = 149/155 (96.13%), Query Frame = 3
Query:    6 SYAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            +YAP+ISAEKAYHEQLSV EITN+ FEP+N + KCDPRHGKYMACCM+YRGDVVPKDVN+A+ATIKTKRT+QFVDWCPTGFK GINYQPPTVVPGGDLA+VQRAVCM+SNTTAIAEA +R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL
Sbjct:  271 TYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 425          
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBA3C_HUMAN (Tubulin alpha-3C/D chain OS=Homo sapiens GN=TUBA3C PE=1 SV=3)

HSP 1 Score: 297.745 bits (761), Expect = 1.608e-80
Identity = 136/155 (87.74%), Postives = 149/155 (96.13%), Query Frame = 3
Query:    6 SYAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            +YAP+ISAEKAYHEQLSV EITN+ FEP+N + KCDPRHGKYMACCM+YRGDVVPKDVN+A+ATIKTKRT+QFVDWCPTGFK GINYQPPTVVPGGDLA+VQRAVCM+SNTTAIAEA +R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL
Sbjct:  271 TYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 425          
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBA1_DROME (Tubulin alpha-1 chain OS=Drosophila melanogaster GN=alphaTub84B PE=2 SV=1)

HSP 1 Score: 297.745 bits (761), Expect = 1.608e-80
Identity = 136/155 (87.74%), Postives = 149/155 (96.13%), Query Frame = 3
Query:    6 SYAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            +YAP+ISAEKAYHEQLSV EITN+ FEP+N + KCDPRHGKYMACCM+YRGDVVPKDVN+A+ATIKTKRT+QFVDWCPTGFK GINYQPPTVVPGGDLA+VQRAVCM+SNTTAIAEA +R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL
Sbjct:  271 TYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 425          
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBA2_STYLE (Tubulin alpha-2 chain OS=Stylonychia lemnae PE=3 SV=1)

HSP 1 Score: 297.36 bits (760), Expect = 2.101e-80
Identity = 137/155 (88.39%), Postives = 147/155 (94.84%), Query Frame = 3
Query:    6 SYAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            S AP+ISAEKAYHEQLSV EITNS FEP++M+ KCDPRHGKYMACC+MYRGDVVPKDVN+AVATIKTKRT+QFVDWCPTGFKCGINYQPPTVVP GDLA+V RAVCM+SN+TAIAE  SRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL
Sbjct:  270 SSAPVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPSGDLAKVMRAVCMISNSTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 424          
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBA_TETTH (Tubulin alpha chain OS=Tetrahymena thermophila PE=1 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 2.744e-80
Identity = 137/156 (87.82%), Postives = 148/156 (94.87%), Query Frame = 3
Query:    3 TSYAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            +SYAPIISAEKAYHEQLSV EITNS FEP+NM+ KCDPRHGKYMAC MMYRGDVVPKDVN+++ATIKTKRT+QFVDWCPTGFK GINYQPPTVVPGGDLA+V RAVCM+SN+TAIAE  SR+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL
Sbjct:  270 SSYAPIISAEKAYHEQLSVAEITNSAFEPANMMAKCDPRHGKYMACSMMYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAEVFSRLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 425          
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBAE_PHYPO (Tubulin alpha-2B chain OS=Physarum polycephalum GN=ALTBE PE=2 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 3.583e-80
Identity = 135/155 (87.10%), Postives = 149/155 (96.13%), Query Frame = 3
Query:    6 SYAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            SYAP+ISAEKA+HEQLSV E+TN+VF+PS+M+ KCDPRHGKYMACC+MYRGDVVPKDVN+AVA IKTKRT+QFVDWCPTGFKCGINYQPP+VVPGGDLA+VQRA+CM+SNTTAIAE  SRIDHKFDLMYAKRAFVHWYVGEGMEE EFSEAREDL
Sbjct:  271 SYAPVISAEKAFHEQLSVAELTNTVFDPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVAVIKTKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRALCMISNTTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEVEFSEAREDL 425          
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBA8_CHICK (Tubulin alpha-8 chain (Fragment) OS=Gallus gallus PE=3 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 3.583e-80
Identity = 136/155 (87.74%), Postives = 148/155 (95.48%), Query Frame = 3
Query:    6 SYAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            +Y+PIISAEKAYHEQLSV EITN+ FEPSN + KCDPRHGKYMACCM+YRGDVVPKDVN+A+A IKTKRT+QFVDWCPTGFK GINYQPPTVVPGGDLA+VQRAVCM+SNTTAIAEA +R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL
Sbjct:  146 TYSPIISAEKAYHEQLSVSEITNACFEPSNQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIAAIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 300          
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBA2_ORYSJ (Tubulin alpha-2 chain OS=Oryza sativa subsp. japonica GN=TUBA PE=2 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 3.583e-80
Identity = 135/156 (86.54%), Postives = 149/156 (95.51%), Query Frame = 3
Query:    3 TSYAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            +SYAP+ISAEKAYHEQLSV EITNS FEPS+M+ KCDPRHGKYMACC+MYRGDVVPKDVN+AVATIKTKRT+QFVDWCPTGFKCGINYQPP+VVPGGDLA+VQRAVCM+SN+T++ E  SRID KFDLMY+KRAFVHWYVGEGMEEGEFSEAREDL
Sbjct:  270 SSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTSVVEVFSRIDIKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDL 425          
The following BLAST results are available for this feature:
BLAST of CX300731 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 379
Match NameE-valueIdentityDescription
TBA_BOMMO1.608e-8087.74Tubulin alpha chain OS=Bombyx mori PE=2 SV=1[more]
TBA3_RAT1.608e-8087.74Tubulin alpha-3 chain OS=Rattus norvegicus GN=Tuba... [more]
TBA3_MOUSE1.608e-8087.74Tubulin alpha-3 chain OS=Mus musculus GN=Tuba3a PE... [more]
TBA3C_HUMAN1.608e-8087.74Tubulin alpha-3C/D chain OS=Homo sapiens GN=TUBA3C... [more]
TBA1_DROME1.608e-8087.74Tubulin alpha-1 chain OS=Drosophila melanogaster G... [more]
TBA2_STYLE2.101e-8088.39Tubulin alpha-2 chain OS=Stylonychia lemnae PE=3 S... [more]
TBA_TETTH2.744e-8087.82Tubulin alpha chain OS=Tetrahymena thermophila PE=... [more]
TBAE_PHYPO3.583e-8087.10Tubulin alpha-2B chain OS=Physarum polycephalum GN... [more]
TBA8_CHICK3.583e-8087.74Tubulin alpha-8 chain (Fragment) OS=Gallus gallus ... [more]
TBA2_ORYSJ3.583e-8086.54Tubulin alpha-2 chain OS=Oryza sativa subsp. japon... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC08001F05SK PhyRootSw1 Citrus sinensis cDNA clone C08001F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300731 ID=CX300731; Name=CX300731; organism=Citrus sinensis; type=EST; length=470bp
TGACCTCATACGCTCCAATCATCTCAGCAGAGAAGGCTTACCACGAGCAA
TTATCAGTGCACGAGATCACCAACTCGGTGTTCGAGCCATCAAACATGTT
GACGAAGTGCGATCCTCGTCACGGCAAGTACATGGCTTGCTGCATGATGT
ACCGTGGTGATGTGGTGCCAAAGGATGTGAACTCTGCAGTGGCCACCATC
AAGACAAAGCGCACAGTTCAATTCGTGGACTGGTGCCCAACCGGCTTCAA
GTGCGGTATCAACTACCAGCCACCAACAGTCGTTCCAGGAGGTGACTTGG
CTCGTGTGCAACGCGCTGTATGCATGGTTTCTAACACCACCGCAATCGCC
GAGGCCTTGTCTCGTATCGACCACAAGTTCGACTTGATGTACGCCAAGCG
TGCTTTCGTGCACTGGTACGTCGGAGAAGGTATGGAGGAAGGAGAGTTCT
CCGAGGCTCGTGAGGACTTG
back to top