CX300731

Overview
NameCX300731
Unique NameCX300731
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length470
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBA1A_PIG (Tubulin alpha-1A chain OS=Sus scrofa GN=TUBA1A PE=1 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 1.362e-79
Identity = 133/155 (85.81%), Postives = 149/155 (96.13%), Query Frame = 3 
Query:    6 SYAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            +YAP+ISAEKAYHEQLSV EITN+ FEP+N + KCDPRHGKYMACC++YRGDVVPKDVN+A+ATIKTKRT+QFVDWCPTGFK GINY+PPTVVPGGDLA+VQRAVCM+SNTTAIAEA +R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+
Sbjct:  271 TYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDM 425
[Close]
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBA1C_HUMAN (Tubulin alpha-1C chain OS=Homo sapiens GN=TUBA1C PE=1 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 1.778e-79
Identity = 132/155 (85.16%), Postives = 149/155 (96.13%), Query Frame = 3 
Query:    6 SYAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            +YAP+ISAEKAYHEQL+V EITN+ FEP+N + KCDPRHGKYMACC++YRGDVVPKDVN+A+ATIKTKRT+QFVDWCPTGFK GINYQPPTVVPGGDLA+VQRAVCM+SNTTA+AEA +R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+
Sbjct:  271 TYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDM 425
[Close]
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBA1B_RAT (Tubulin alpha-1B chain OS=Rattus norvegicus GN=Tuba1b PE=1 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 1.778e-79
Identity = 133/155 (85.81%), Postives = 149/155 (96.13%), Query Frame = 3 
Query:    6 SYAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            +YAP+ISAEKAYHEQLSV EITN+ FEP+N + KCDPRHGKYMACC++YRGDVVPKDVN+A+ATIKTKR++QFVDWCPTGFK GINYQPPTVVPGGDLA+VQRAVCM+SNTTAIAEA +R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+
Sbjct:  271 TYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDM 425
[Close]
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBA1B_PIG (Tubulin alpha-1B chain OS=Sus scrofa GN=TUBA1B PE=2 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 1.778e-79
Identity = 133/155 (85.81%), Postives = 149/155 (96.13%), Query Frame = 3 
Query:    6 SYAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            +YAP+ISAEKAYHEQLSV EITN+ FEP+N + KCDPRHGKYMACC++YRGDVVPKDVN+A+ATIKTKR++QFVDWCPTGFK GINYQPPTVVPGGDLA+VQRAVCM+SNTTAIAEA +R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+
Sbjct:  271 TYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDM 425
[Close]
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBA1B_MOUSE (Tubulin alpha-1B chain OS=Mus musculus GN=Tuba1b PE=1 SV=2)

HSP 1 Score: 294.278 bits (752), Expect = 1.778e-79
Identity = 133/155 (85.81%), Postives = 149/155 (96.13%), Query Frame = 3 
Query:    6 SYAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            +YAP+ISAEKAYHEQLSV EITN+ FEP+N + KCDPRHGKYMACC++YRGDVVPKDVN+A+ATIKTKR++QFVDWCPTGFK GINYQPPTVVPGGDLA+VQRAVCM+SNTTAIAEA +R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+
Sbjct:  271 TYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDM 425
[Close]
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBA1B_MERUN (Tubulin alpha-1B chain OS=Meriones unguiculatus GN=TUBA1B PE=2 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 1.778e-79
Identity = 133/155 (85.81%), Postives = 149/155 (96.13%), Query Frame = 3 
Query:    6 SYAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            +YAP+ISAEKAYHEQLSV EITN+ FEP+N + KCDPRHGKYMACC++YRGDVVPKDVN+A+ATIKTKR++QFVDWCPTGFK GINYQPPTVVPGGDLA+VQRAVCM+SNTTAIAEA +R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+
Sbjct:  271 TYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDM 425
[Close]
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBA1B_MACFA (Tubulin alpha-1B chain OS=Macaca fascicularis GN=TUBA1B PE=2 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 1.778e-79
Identity = 133/155 (85.81%), Postives = 149/155 (96.13%), Query Frame = 3 
Query:    6 SYAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            +YAP+ISAEKAYHEQLSV EITN+ FEP+N + KCDPRHGKYMACC++YRGDVVPKDVN+A+ATIKTKR++QFVDWCPTGFK GINYQPPTVVPGGDLA+VQRAVCM+SNTTAIAEA +R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+
Sbjct:  271 TYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDM 425
[Close]
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBA1B_HUMAN (Tubulin alpha-1B chain OS=Homo sapiens GN=TUBA1B PE=1 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 1.778e-79
Identity = 133/155 (85.81%), Postives = 149/155 (96.13%), Query Frame = 3 
Query:    6 SYAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            +YAP+ISAEKAYHEQLSV EITN+ FEP+N + KCDPRHGKYMACC++YRGDVVPKDVN+A+ATIKTKR++QFVDWCPTGFK GINYQPPTVVPGGDLA+VQRAVCM+SNTTAIAEA +R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+
Sbjct:  271 TYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDM 425
[Close]
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBA1B_CRIGR (Tubulin alpha-1B chain OS=Cricetulus griseus GN=TUBA1B PE=2 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 1.778e-79
Identity = 133/155 (85.81%), Postives = 149/155 (96.13%), Query Frame = 3 
Query:    6 SYAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            +YAP+ISAEKAYHEQLSV EITN+ FEP+N + KCDPRHGKYMACC++YRGDVVPKDVN+A+ATIKTKR++QFVDWCPTGFK GINYQPPTVVPGGDLA+VQRAVCM+SNTTAIAEA +R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+
Sbjct:  271 TYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDM 425
[Close]
BLAST of CX300731 vs. ExPASy Swiss-Prot
Match: TBA1B_BOVIN (Tubulin alpha-1B chain OS=Bos taurus PE=1 SV=2)

HSP 1 Score: 294.278 bits (752), Expect = 1.778e-79
Identity = 133/155 (85.81%), Postives = 149/155 (96.13%), Query Frame = 3 
Query:    6 SYAPIISAEKAYHEQLSVHEITNSVFEPSNMLTKCDPRHGKYMACCMMYRGDVVPKDVNSAVATIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVSNTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDL 470
            +YAP+ISAEKAYHEQLSV EITN+ FEP+N + KCDPRHGKYMACC++YRGDVVPKDVN+A+ATIKTKR++QFVDWCPTGFK GINYQPPTVVPGGDLA+VQRAVCM+SNTTAIAEA +R+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+
Sbjct:  271 TYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDM 425
The following BLAST results are available for this feature:
BLAST of CX300731 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 379
Match NameE-valueIdentityDescription
TBA1A_PIG1.362e-7985.81Tubulin alpha-1A chain OS=Sus scrofa GN=TUBA1A PE=... [more]
TBA1C_HUMAN1.778e-7985.16Tubulin alpha-1C chain OS=Homo sapiens GN=TUBA1C P... [more]
TBA1B_RAT1.778e-7985.81Tubulin alpha-1B chain OS=Rattus norvegicus GN=Tub... [more]
TBA1B_PIG1.778e-7985.81Tubulin alpha-1B chain OS=Sus scrofa GN=TUBA1B PE=... [more]
TBA1B_MOUSE1.778e-7985.81Tubulin alpha-1B chain OS=Mus musculus GN=Tuba1b P... [more]
TBA1B_MERUN1.778e-7985.81Tubulin alpha-1B chain OS=Meriones unguiculatus GN... [more]
TBA1B_MACFA1.778e-7985.81Tubulin alpha-1B chain OS=Macaca fascicularis GN=T... [more]
TBA1B_HUMAN1.778e-7985.81Tubulin alpha-1B chain OS=Homo sapiens GN=TUBA1B P... [more]
TBA1B_CRIGR1.778e-7985.81Tubulin alpha-1B chain OS=Cricetulus griseus GN=TU... [more]
TBA1B_BOVIN1.778e-7985.81Tubulin alpha-1B chain OS=Bos taurus PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC08001F05SK PhyRootSw1 Citrus sinensis cDNA clone C08001F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300731 ID=CX300731; Name=CX300731; organism=Citrus sinensis; type=EST; length=470bp
TGACCTCATACGCTCCAATCATCTCAGCAGAGAAGGCTTACCACGAGCAA
TTATCAGTGCACGAGATCACCAACTCGGTGTTCGAGCCATCAAACATGTT
GACGAAGTGCGATCCTCGTCACGGCAAGTACATGGCTTGCTGCATGATGT
ACCGTGGTGATGTGGTGCCAAAGGATGTGAACTCTGCAGTGGCCACCATC
AAGACAAAGCGCACAGTTCAATTCGTGGACTGGTGCCCAACCGGCTTCAA
GTGCGGTATCAACTACCAGCCACCAACAGTCGTTCCAGGAGGTGACTTGG
CTCGTGTGCAACGCGCTGTATGCATGGTTTCTAACACCACCGCAATCGCC
GAGGCCTTGTCTCGTATCGACCACAAGTTCGACTTGATGTACGCCAAGCG
TGCTTTCGTGCACTGGTACGTCGGAGAAGGTATGGAGGAAGGAGAGTTCT
CCGAGGCTCGTGAGGACTTG
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