CX300726

Overview
NameCX300726
Unique NameCX300726
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length495
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300726 vs. ExPASy Swiss-Prot
Match: RS13_HUMAN (40S ribosomal protein S13 OS=Homo sapiens GN=RPS13 PE=1 SV=2)

HSP 1 Score: 234.572 bits (597), Expect = 1.903e-61
Identity = 111/144 (77.08%), Postives = 131/144 (90.97%), Query Frame = 3
Query:   63 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYEST 494
            MGRMH+ GKG+S SALPY+R+ P+WLK++S DV++ I K AKKGLTPSQIGVILRDSHG+AQV+ VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK  + LPP WKYES+
Sbjct:    1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWKYESS 144          
BLAST of CX300726 vs. ExPASy Swiss-Prot
Match: RS13_CRIGR (40S ribosomal protein S13 OS=Cricetulus griseus GN=RPS13 PE=3 SV=3)

HSP 1 Score: 234.572 bits (597), Expect = 1.903e-61
Identity = 111/144 (77.08%), Postives = 131/144 (90.97%), Query Frame = 3
Query:   63 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYEST 494
            MGRMH+ GKG+S SALPY+R+ P+WLK++S DV++ I K AKKGLTPSQIGVILRDSHG+AQV+ VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK  + LPP WKYES+
Sbjct:    1 MGRMHAPGKGLSQSALPYRRSVPTWLKLASDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWKYESS 144          
BLAST of CX300726 vs. ExPASy Swiss-Prot
Match: RS13_CHICK (40S ribosomal protein S13 OS=Gallus gallus GN=RPS13 PE=2 SV=3)

HSP 1 Score: 234.572 bits (597), Expect = 1.903e-61
Identity = 111/144 (77.08%), Postives = 131/144 (90.97%), Query Frame = 3
Query:   63 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYEST 494
            MGRMH+ GKG+S SALPY+R+ P+WLK++S DV++ I K AKKGLTPSQIGVILRDSHG+AQV+ VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK  + LPP WKYES+
Sbjct:    1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWKYESS 144          
BLAST of CX300726 vs. ExPASy Swiss-Prot
Match: RS13_BOVIN (40S ribosomal protein S13 OS=Bos taurus GN=RPS13 PE=2 SV=3)

HSP 1 Score: 234.572 bits (597), Expect = 1.903e-61
Identity = 111/144 (77.08%), Postives = 131/144 (90.97%), Query Frame = 3
Query:   63 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYEST 494
            MGRMH+ GKG+S SALPY+R+ P+WLK++S DV++ I K AKKGLTPSQIGVILRDSHG+AQV+ VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK  + LPP WKYES+
Sbjct:    1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWKYESS 144          
BLAST of CX300726 vs. ExPASy Swiss-Prot
Match: RS13_LUMRU (40S ribosomal protein S13 OS=Lumbricus rubellus GN=RPS13 PE=2 SV=3)

HSP 1 Score: 232.646 bits (592), Expect = 7.232e-61
Identity = 115/143 (80.42%), Postives = 125/143 (87.41%), Query Frame = 3
Query:   63 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYES 491
            MGRMH+ GKGIS SALPY+R+ P+WLK+   DV++ I K AKKGLTPSQIGVILRDSHG+AQ + V G+KILRILKA GLAP IPEDLY LIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYK  K LPPVWKYES
Sbjct:    1 MGRMHAPGKGISQSALPYRRSVPTWLKLGPDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQTRHVAGNKILRILKAKGLAPTIPEDLYFLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKTRKVLPPVWKYES 143          
BLAST of CX300726 vs. ExPASy Swiss-Prot
Match: RS13_WUCBA (40S ribosomal protein S13 OS=Wuchereria bancrofti GN=RPS13 PE=3 SV=2)

HSP 1 Score: 230.72 bits (587), Expect = 2.748e-60
Identity = 109/144 (75.69%), Postives = 130/144 (90.28%), Query Frame = 3
Query:   63 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYEST 494
            MGRMH+ GKGIS SALPY+R+ P+WLK++S++V++ + + AKKGL PSQIGVILRDSHG+AQV+ VTG+KI+RILKA G+APEIPEDLYHLIKKAV IRKHLERNRKDKDSK+RLILVESRIHRLARYYK  ++LP  WKYES+
Sbjct:    1 MGRMHNPGKGISQSALPYRRSVPTWLKLTSEEVQEQVTRLAKKGLRPSQIGVILRDSHGVAQVRRVTGNKIVRILKAKGMAPEIPEDLYHLIKKAVNIRKHLERNRKDKDSKYRLILVESRIHRLARYYKTKRQLPATWKYESS 144          
BLAST of CX300726 vs. ExPASy Swiss-Prot
Match: RS13_BRUPA (40S ribosomal protein S13 OS=Brugia pahangi GN=RPS13 PE=2 SV=2)

HSP 1 Score: 230.72 bits (587), Expect = 2.748e-60
Identity = 109/144 (75.69%), Postives = 130/144 (90.28%), Query Frame = 3
Query:   63 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYEST 494
            MGRMH+ GKGIS SALPY+R+ P+WLK++S++V++ + + AKKGL PSQIGVILRDSHG+AQV+ VTG+KI+RILKA G+APEIPEDLYHLIKKAV IRKHLERNRKDKDSK+RLILVESRIHRLARYYK  ++LP  WKYES+
Sbjct:    1 MGRMHNPGKGISQSALPYRRSVPTWLKLTSEEVQEQVTRLAKKGLRPSQIGVILRDSHGVAQVRRVTGNKIVRILKAKGMAPEIPEDLYHLIKKAVNIRKHLERNRKDKDSKYRLILVESRIHRLARYYKTKRQLPATWKYESS 144          
BLAST of CX300726 vs. ExPASy Swiss-Prot
Match: RS13_ICTPU (40S ribosomal protein S13 OS=Ictalurus punctatus GN=rps13 PE=2 SV=3)

HSP 1 Score: 230.335 bits (586), Expect = 3.589e-60
Identity = 110/144 (76.39%), Postives = 130/144 (90.28%), Query Frame = 3
Query:   63 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYEST 494
            MGRMH+ GKG+S SALP++R+ P+WLK++S DV++ I K AKKGLTPSQIGVILRDSHG+AQV+ VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+RKHLERNRKDKD+KFRLILVESRIHRLARYYK  + L P WKYES+
Sbjct:    1 MGRMHAPGKGLSQSALPFRRSVPTWLKLTSDDVKEQIFKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILVESRIHRLARYYKTKRVLAPNWKYESS 144          
BLAST of CX300726 vs. ExPASy Swiss-Prot
Match: RS13_GILMI (40S ribosomal protein S13 OS=Gillichthys mirabilis GN=rps13 PE=2 SV=3)

HSP 1 Score: 229.18 bits (583), Expect = 7.996e-60
Identity = 109/144 (75.69%), Postives = 129/144 (89.58%), Query Frame = 3
Query:   63 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYEST 494
            MGRMH+ GKG+S SALPY+R+ P+WLK++S DV++ I K AKKGLTPSQIGVILRDSHG+AQV+ VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+RKHLERNRKDKD+KFRLIL+ESRIHRLARYYK  + L P WKY S+
Sbjct:    1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIFKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRKDKDAKFRLILIESRIHRLARYYKTKRVLAPNWKYXSS 144          
BLAST of CX300726 vs. ExPASy Swiss-Prot
Match: RS13_SPOFR (40S ribosomal protein S13 OS=Spodoptera frugiperda GN=RpS13 PE=2 SV=3)

HSP 1 Score: 228.794 bits (582), Expect = 1.044e-59
Identity = 110/144 (76.39%), Postives = 128/144 (88.89%), Query Frame = 3
Query:   63 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYEST 494
            MGRMH+ GKGIS SALPY+R+ P+WLK+++ DV++ I K  KKGLTPSQIGV+LRDSHG+AQV+ VTG KILRI+KA GLAP++PEDLY+LIKKAVA+RKHLERNRKDKDSKFRLILVESRIHRLARYYK    LPP WKYES+
Sbjct:    1 MGRMHAPGKGISQSALPYRRSVPTWLKLTADDVKEQIFKLGKKGLTPSQIGVMLRDSHGVAQVRFVTGKKILRIMKAMGLAPDLPEDLYYLIKKAVAMRKHLERNRKDKDSKFRLILVESRIHRLARYYKTKSVLPPNWKYESS 144          
The following BLAST results are available for this feature:
BLAST of CX300726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS13_HUMAN1.903e-6177.0840S ribosomal protein S13 OS=Homo sapiens GN=RPS13... [more]
RS13_CRIGR1.903e-6177.0840S ribosomal protein S13 OS=Cricetulus griseus GN... [more]
RS13_CHICK1.903e-6177.0840S ribosomal protein S13 OS=Gallus gallus GN=RPS1... [more]
RS13_BOVIN1.903e-6177.0840S ribosomal protein S13 OS=Bos taurus GN=RPS13 P... [more]
RS13_LUMRU7.232e-6180.4240S ribosomal protein S13 OS=Lumbricus rubellus GN... [more]
RS13_WUCBA2.748e-6075.6940S ribosomal protein S13 OS=Wuchereria bancrofti ... [more]
RS13_BRUPA2.748e-6075.6940S ribosomal protein S13 OS=Brugia pahangi GN=RPS... [more]
RS13_ICTPU3.589e-6076.3940S ribosomal protein S13 OS=Ictalurus punctatus G... [more]
RS13_GILMI7.996e-6075.6940S ribosomal protein S13 OS=Gillichthys mirabilis... [more]
RS13_SPOFR1.044e-5976.3940S ribosomal protein S13 OS=Spodoptera frugiperda... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC08001E12SK PhyRootSw1 Citrus sinensis cDNA clone C08001E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300726 ID=CX300726; Name=CX300726; organism=Citrus sinensis; type=EST; length=495bp
GCGGCTTGTTGCAGTACAAAGTTGAACACAAAGCTTGCTGCTTCACCTCC
GTCGACGTCACCATGGGTCGTATGCACAGTCGCGGTAAGGGTATTTCTGC
TTCAGCTTTGCCTTACAAGAGAACACCACCAAGTTGGCTCAAGATTTCCA
GCCAAGATGTTGAGGATAACATCTGTAAGTTTGCAAAGAAGGGTTTGACT
CCATCACAGATTGGTGTTATTCTTCGTGACTCTCACGGTATTGCCCAGGT
TAAGAGCGTTACTGGAAGCAAGATTTTGCGTATCCTCAAGGCTCATGGAC
TCGCACCTGAAATTCCTGAGGATCTGTACCACCTCATCAAGAAGGCTGTT
GCTATTAGGAAGCATTTGGAAAGGAACAGGAAGGACAAGGATTCCAAGTT
CCGCTTGATTCTTGTTGAAAGCAGGATTCACAGGCTTGCTCGCTACTACA
AGAAAACCAAGAAGCTTCCTCCTGTCTGGAAATATGAGTCTACTA
back to top