CX300726
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300726 vs. ExPASy Swiss-Prot
Match: RS13_DICDI (40S ribosomal protein S13 OS=Dictyostelium discoideum GN=rps13 PE=3 SV=1) HSP 1 Score: 197.208 bits (500), Expect = 3.367e-50 Identity = 98/143 (68.53%), Postives = 112/143 (78.32%), Query Frame = 3 Query: 63 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYES 491 MGRMHS GKGIS S+LPY R P +W K ++ +V + +CK AK+G TPS+IG LRDS G+AQVK+VTGSKILRILK +GLAP IPEDLYHLIKKAV I KHL+R RKD D KF L LVESRIHRL R Y+K L P WKYES Sbjct: 1 MGRMHSNGKGISGSSLPYNRKPHAWTKPTASEVCETVCKLAKRGYTPSKIGSSLRDSLGVAQVKNVTGSKILRILKVNGLAPTIPEDLYHLIKKAVTINKHLQRARKDYDGKFHLRLVESRIHRLTRPYRKNGTLAPNWKYES 143
BLAST of CX300726 vs. ExPASy Swiss-Prot
Match: RS13_MUSDO (40S ribosomal protein S13 (Fragment) OS=Musca domestica GN=RpS13 PE=3 SV=1) HSP 1 Score: 174.481 bits (441), Expect = 2.337e-43 Identity = 84/106 (79.25%), Postives = 94/106 (88.68%), Query Frame = 3 Query: 177 KFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYEST 494 K KKGLTPS+IG+ILRDSHG+AQV+ V G+KILRI+K+ GL P+IPEDLYH+IKKAVAIRKHLERNRKDKD KFRLILVESRIHRLARYYK LPP WKYES+ Sbjct: 2 KLGKKGLTPSKIGIILRDSHGVAQVRFVNGNKILRIMKSVGLKPDIPEDLYHMIKKAVAIRKHLERNRKDKDGKFRLILVESRIHRLARYYKTKSVLPPNWKYESS 107
BLAST of CX300726 vs. ExPASy Swiss-Prot
Match: RS13_PIG (40S ribosomal protein S13 (Fragment) OS=Sus scrofa GN=RPS13 PE=3 SV=2) HSP 1 Score: 173.711 bits (439), Expect = 3.987e-43 Identity = 82/107 (76.64%), Postives = 98/107 (91.59%), Query Frame = 3 Query: 63 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRK 383 MGRMH+ GKG+S SALPY+R+ P+WLK++S DV++ I K AKKGLTPSQIGVILRDSHG+AQV+ VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+RKHLERNRK Sbjct: 1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRK 107
BLAST of CX300726 vs. ExPASy Swiss-Prot
Match: RS15_METKA (30S ribosomal protein S15P/S13e OS=Methanopyrus kandleri GN=rps15p PE=3 SV=1) HSP 1 Score: 152.14 bits (383), Expect = 1.242e-36 Identity = 73/142 (51.41%), Postives = 99/142 (69.72%), Query Frame = 3 Query: 63 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYE 488 M RMHSR +G S S P + PPSW++ S ++VE + AK+G P+ IG+ LRD +GI VK +TG KI IL+ HGLAPE+PEDL +LI++A +R+HL+R+ KD SK L L+ES+IHRL +YYK+ LP WKY+ Sbjct: 1 MARMHSRDRGKSGSTRPPRVAPPSWVEYSPEEVESLVVDLAKQGYEPAMIGIKLRDEYGIPDVKLITGKKITEILEEHGLAPELPEDLLNLIRRAKRVREHLKRHPKDLHSKRGLQLIESKIHRLVKYYKRKGVLPEDWKYD 142
BLAST of CX300726 vs. ExPASy Swiss-Prot
Match: RS15_PYRKO (30S ribosomal protein S15P/S13e OS=Pyrococcus kodakaraensis GN=rps15p PE=3 SV=1) HSP 1 Score: 149.443 bits (376), Expect = 8.052e-36 Identity = 70/142 (49.30%), Postives = 103/142 (72.54%), Query Frame = 3 Query: 63 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYE 488 M R+H+R +G S S P + PP+W++ ++++VE + K K+G + + IG ILRD +GI VK +TG KI +IL+ +GLAPEIPEDL LI++AV +RKHLE++ KDK S+ L L+ES+I RL +YY++T KLP W+Y+ Sbjct: 1 MARIHARKRGKSGSKRPPRTAPPAWVEYTAEEVEALVVKLRKEGYSTAMIGTILRDQYGIPSVKLITGKKITKILEENGLAPEIPEDLMFLIRRAVNLRKHLEQHPKDKHSRRGLQLIESKIRRLVKYYRRTGKLPAKWRYD 142
BLAST of CX300726 vs. ExPASy Swiss-Prot
Match: RS15_THEPD (30S ribosomal protein S15P/S13e OS=Thermofilum pendens (strain Hrk 5) GN=rps15p PE=3 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 1.794e-35 Identity = 72/137 (52.55%), Postives = 96/137 (70.07%), Query Frame = 3 Query: 78 SRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYE 488 S+ KG S S P + P W+K+ ++VE+ + +KG PS IGVILRD +GI VK+VTG +L+IL+ GLAPEIPEDL +L+K+A+ +RKHLE + KD SK L L+ES+IHRL +YYK+ LPP WKYE Sbjct: 4 SKEKGRSGSTRPPQLKKPEWVKMRPEEVEELVVSLYRKGYPPSMIGVILRDQYGIPMVKAVTGKSVLQILRERGLAPEIPEDLMNLMKRAIRVRKHLEEHPKDYHSKRGLQLIESKIHRLVKYYKREGILPPDWKYE 140
BLAST of CX300726 vs. ExPASy Swiss-Prot
Match: RS15_METJA (30S ribosomal protein S15P/S13e OS=Methanocaldococcus jannaschii GN=rps15p PE=3 SV=2) HSP 1 Score: 142.895 bits (359), Expect = 7.537e-34 Identity = 68/141 (48.23%), Postives = 98/141 (69.50%), Query Frame = 3 Query: 63 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY 485 M RMH+R +G S S P ++ P W++ + + VE + + AKKG +QIG+ILRD++GI VK +TG KI +I+K HGL P++PEDL +L+++AV +RKHLE++ KD SK L L+ES+I RL +YYK LP W+Y Sbjct: 1 MARMHARKRGRSGSKRPVRKEVPEWVQYTPEQVEQLVVELAKKGYQSAQIGLILRDTYGIPDVKLITGKKISKIMKEHGLYPKVPEDLLNLMRRAVNLRKHLEQHPKDLHSKRGLQLIESKIRRLVKYYKSKGVLPADWRY 141
BLAST of CX300726 vs. ExPASy Swiss-Prot
Match: RS15_META3 (30S ribosomal protein S15P/S13e OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps15p PE=3 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 3.740e-33 Identity = 68/141 (48.23%), Postives = 95/141 (67.38%), Query Frame = 3 Query: 63 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY 485 M R+HS +G S S P + P+W I++++ E+ I K AK+G + IG+ILRDS+GI VK VTG + +I+K + + PEIPEDL++L+KKA+ +R HLE N KD SK L L ES+I RL +YY+ TK LP W+Y Sbjct: 1 MARLHSGKRGSSGSTRPLRTEVPAWANITAEETEEVIVKMAKEGKQSAMIGLILRDSYGIPDVKLVTGKSVAQIMKDNNVYPEIPEDLFNLMKKAINLRNHLEENTKDIHSKRGLQLTESKIRRLVKYYRNTKVLPAKWRY 141
BLAST of CX300726 vs. ExPASy Swiss-Prot
Match: RS15_STAMF (30S ribosomal protein S15P/S13e OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps15p PE=3 SV=1) HSP 1 Score: 139.813 bits (351), Expect = 6.380e-33 Identity = 69/137 (50.36%), Postives = 95/137 (69.34%), Query Frame = 3 Query: 81 RGKGISASALPYKRTPPSWLKI--SSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY 485 R KG S S P + PP WLK+ S D+E + + AKKG TPS IG+ILRD +G+ VK VTG K+++IL+ HG+ +PEDL L++KAV +R+HLE + KD +K L+ +ES+IHRL +YYK+ +LPP WKY Sbjct: 5 RDKGQSHSTRPARAGPPRWLKLDMSPSDIELLVVELAKKGYTPSMIGIILRDQYGVPLVKQVTGKKLVQILEKHGIKLPVPEDLLFLMRKAVNLRRHLEEHPKDFHAKKGLLDLESKIHRLVKYYKRIGRLPPDWKY 141
BLAST of CX300726 vs. ExPASy Swiss-Prot
Match: RS15_IGNH4 (30S ribosomal protein S15P/S13e OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps15p PE=3 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 1.856e-32 Identity = 63/134 (47.01%), Postives = 91/134 (67.91%), Query Frame = 3 Query: 87 KGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYE 488 KG S S P + TPP W+ ++++ I + +KKG PS IG+ILRD G+ VK + G K+++I++ G+AP IPEDL+HL+K+AV +R HL + KDK S L+ +ES+I RL +YYK+ KLPP WKY+ Sbjct: 7 KGKSHSKRPVRNTPPRWVPFGPEEIKALIVELSKKGYGPSMIGIILRDQFGVPLVKPIVGKKLVKIMEEQGVAPPIPEDLFHLMKRAVRVRAHLAEHPKDKHSARGLMEIESKIRRLVKYYKRVGKLPPDWKYD 140 The following BLAST results are available for this feature:
BLAST of CX300726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 83
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX300726 ID=CX300726; Name=CX300726; organism=Citrus sinensis; type=EST; length=495bpback to top |