CX300726

Overview
NameCX300726
Unique NameCX300726
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length495
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300726 vs. ExPASy Swiss-Prot
Match: RS13_DICDI (40S ribosomal protein S13 OS=Dictyostelium discoideum GN=rps13 PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 3.367e-50
Identity = 98/143 (68.53%), Postives = 112/143 (78.32%), Query Frame = 3
Query:   63 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYES 491
            MGRMHS GKGIS S+LPY R P +W K ++ +V + +CK AK+G TPS+IG  LRDS G+AQVK+VTGSKILRILK +GLAP IPEDLYHLIKKAV I KHL+R RKD D KF L LVESRIHRL R Y+K   L P WKYES
Sbjct:    1 MGRMHSNGKGISGSSLPYNRKPHAWTKPTASEVCETVCKLAKRGYTPSKIGSSLRDSLGVAQVKNVTGSKILRILKVNGLAPTIPEDLYHLIKKAVTINKHLQRARKDYDGKFHLRLVESRIHRLTRPYRKNGTLAPNWKYES 143          
BLAST of CX300726 vs. ExPASy Swiss-Prot
Match: RS13_MUSDO (40S ribosomal protein S13 (Fragment) OS=Musca domestica GN=RpS13 PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 2.337e-43
Identity = 84/106 (79.25%), Postives = 94/106 (88.68%), Query Frame = 3
Query:  177 KFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYEST 494
            K  KKGLTPS+IG+ILRDSHG+AQV+ V G+KILRI+K+ GL P+IPEDLYH+IKKAVAIRKHLERNRKDKD KFRLILVESRIHRLARYYK    LPP WKYES+
Sbjct:    2 KLGKKGLTPSKIGIILRDSHGVAQVRFVNGNKILRIMKSVGLKPDIPEDLYHMIKKAVAIRKHLERNRKDKDGKFRLILVESRIHRLARYYKTKSVLPPNWKYESS 107          
BLAST of CX300726 vs. ExPASy Swiss-Prot
Match: RS13_PIG (40S ribosomal protein S13 (Fragment) OS=Sus scrofa GN=RPS13 PE=3 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 3.987e-43
Identity = 82/107 (76.64%), Postives = 98/107 (91.59%), Query Frame = 3
Query:   63 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRK 383
            MGRMH+ GKG+S SALPY+R+ P+WLK++S DV++ I K AKKGLTPSQIGVILRDSHG+AQV+ VTG+KILRILK+ GLAP++PEDLYHLIKKAVA+RKHLERNRK
Sbjct:    1 MGRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIGVILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKHLERNRK 107          
BLAST of CX300726 vs. ExPASy Swiss-Prot
Match: RS15_METKA (30S ribosomal protein S15P/S13e OS=Methanopyrus kandleri GN=rps15p PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.242e-36
Identity = 73/142 (51.41%), Postives = 99/142 (69.72%), Query Frame = 3
Query:   63 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYE 488
            M RMHSR +G S S  P +  PPSW++ S ++VE  +   AK+G  P+ IG+ LRD +GI  VK +TG KI  IL+ HGLAPE+PEDL +LI++A  +R+HL+R+ KD  SK  L L+ES+IHRL +YYK+   LP  WKY+
Sbjct:    1 MARMHSRDRGKSGSTRPPRVAPPSWVEYSPEEVESLVVDLAKQGYEPAMIGIKLRDEYGIPDVKLITGKKITEILEEHGLAPELPEDLLNLIRRAKRVREHLKRHPKDLHSKRGLQLIESKIHRLVKYYKRKGVLPEDWKYD 142          
BLAST of CX300726 vs. ExPASy Swiss-Prot
Match: RS15_PYRKO (30S ribosomal protein S15P/S13e OS=Pyrococcus kodakaraensis GN=rps15p PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 8.052e-36
Identity = 70/142 (49.30%), Postives = 103/142 (72.54%), Query Frame = 3
Query:   63 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYE 488
            M R+H+R +G S S  P +  PP+W++ ++++VE  + K  K+G + + IG ILRD +GI  VK +TG KI +IL+ +GLAPEIPEDL  LI++AV +RKHLE++ KDK S+  L L+ES+I RL +YY++T KLP  W+Y+
Sbjct:    1 MARIHARKRGKSGSKRPPRTAPPAWVEYTAEEVEALVVKLRKEGYSTAMIGTILRDQYGIPSVKLITGKKITKILEENGLAPEIPEDLMFLIRRAVNLRKHLEQHPKDKHSRRGLQLIESKIRRLVKYYRRTGKLPAKWRYD 142          
BLAST of CX300726 vs. ExPASy Swiss-Prot
Match: RS15_THEPD (30S ribosomal protein S15P/S13e OS=Thermofilum pendens (strain Hrk 5) GN=rps15p PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.794e-35
Identity = 72/137 (52.55%), Postives = 96/137 (70.07%), Query Frame = 3
Query:   78 SRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYE 488
            S+ KG S S  P +   P W+K+  ++VE+ +    +KG  PS IGVILRD +GI  VK+VTG  +L+IL+  GLAPEIPEDL +L+K+A+ +RKHLE + KD  SK  L L+ES+IHRL +YYK+   LPP WKYE
Sbjct:    4 SKEKGRSGSTRPPQLKKPEWVKMRPEEVEELVVSLYRKGYPPSMIGVILRDQYGIPMVKAVTGKSVLQILRERGLAPEIPEDLMNLMKRAIRVRKHLEEHPKDYHSKRGLQLIESKIHRLVKYYKREGILPPDWKYE 140          
BLAST of CX300726 vs. ExPASy Swiss-Prot
Match: RS15_METJA (30S ribosomal protein S15P/S13e OS=Methanocaldococcus jannaschii GN=rps15p PE=3 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 7.537e-34
Identity = 68/141 (48.23%), Postives = 98/141 (69.50%), Query Frame = 3
Query:   63 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY 485
            M RMH+R +G S S  P ++  P W++ + + VE  + + AKKG   +QIG+ILRD++GI  VK +TG KI +I+K HGL P++PEDL +L+++AV +RKHLE++ KD  SK  L L+ES+I RL +YYK    LP  W+Y
Sbjct:    1 MARMHARKRGRSGSKRPVRKEVPEWVQYTPEQVEQLVVELAKKGYQSAQIGLILRDTYGIPDVKLITGKKISKIMKEHGLYPKVPEDLLNLMRRAVNLRKHLEQHPKDLHSKRGLQLIESKIRRLVKYYKSKGVLPADWRY 141          
BLAST of CX300726 vs. ExPASy Swiss-Prot
Match: RS15_META3 (30S ribosomal protein S15P/S13e OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps15p PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 3.740e-33
Identity = 68/141 (48.23%), Postives = 95/141 (67.38%), Query Frame = 3
Query:   63 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY 485
            M R+HS  +G S S  P +   P+W  I++++ E+ I K AK+G   + IG+ILRDS+GI  VK VTG  + +I+K + + PEIPEDL++L+KKA+ +R HLE N KD  SK  L L ES+I RL +YY+ TK LP  W+Y
Sbjct:    1 MARLHSGKRGSSGSTRPLRTEVPAWANITAEETEEVIVKMAKEGKQSAMIGLILRDSYGIPDVKLVTGKSVAQIMKDNNVYPEIPEDLFNLMKKAINLRNHLEENTKDIHSKRGLQLTESKIRRLVKYYRNTKVLPAKWRY 141          
BLAST of CX300726 vs. ExPASy Swiss-Prot
Match: RS15_STAMF (30S ribosomal protein S15P/S13e OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps15p PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 6.380e-33
Identity = 69/137 (50.36%), Postives = 95/137 (69.34%), Query Frame = 3
Query:   81 RGKGISASALPYKRTPPSWLKI--SSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY 485
            R KG S S  P +  PP WLK+  S  D+E  + + AKKG TPS IG+ILRD +G+  VK VTG K+++IL+ HG+   +PEDL  L++KAV +R+HLE + KD  +K  L+ +ES+IHRL +YYK+  +LPP WKY
Sbjct:    5 RDKGQSHSTRPARAGPPRWLKLDMSPSDIELLVVELAKKGYTPSMIGIILRDQYGVPLVKQVTGKKLVQILEKHGIKLPVPEDLLFLMRKAVNLRRHLEEHPKDFHAKKGLLDLESKIHRLVKYYKRIGRLPPDWKY 141          
BLAST of CX300726 vs. ExPASy Swiss-Prot
Match: RS15_IGNH4 (30S ribosomal protein S15P/S13e OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps15p PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.856e-32
Identity = 63/134 (47.01%), Postives = 91/134 (67.91%), Query Frame = 3
Query:   87 KGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYE 488
            KG S S  P + TPP W+    ++++  I + +KKG  PS IG+ILRD  G+  VK + G K+++I++  G+AP IPEDL+HL+K+AV +R HL  + KDK S   L+ +ES+I RL +YYK+  KLPP WKY+
Sbjct:    7 KGKSHSKRPVRNTPPRWVPFGPEEIKALIVELSKKGYGPSMIGIILRDQFGVPLVKPIVGKKLVKIMEEQGVAPPIPEDLFHLMKRAVRVRAHLAEHPKDKHSARGLMEIESKIRRLVKYYKRVGKLPPDWKYD 140          
The following BLAST results are available for this feature:
BLAST of CX300726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS13_DICDI3.367e-5068.5340S ribosomal protein S13 OS=Dictyostelium discoid... [more]
RS13_MUSDO2.337e-4379.2540S ribosomal protein S13 (Fragment) OS=Musca dome... [more]
RS13_PIG3.987e-4376.6440S ribosomal protein S13 (Fragment) OS=Sus scrofa... [more]
RS15_METKA1.242e-3651.4130S ribosomal protein S15P/S13e OS=Methanopyrus ka... [more]
RS15_PYRKO8.052e-3649.3030S ribosomal protein S15P/S13e OS=Pyrococcus koda... [more]
RS15_THEPD1.794e-3552.5530S ribosomal protein S15P/S13e OS=Thermofilum pen... [more]
RS15_METJA7.537e-3448.2330S ribosomal protein S15P/S13e OS=Methanocaldococ... [more]
RS15_META33.740e-3348.2330S ribosomal protein S15P/S13e OS=Methanococcus a... [more]
RS15_STAMF6.380e-3350.3630S ribosomal protein S15P/S13e OS=Staphylothermus... [more]
RS15_IGNH41.856e-3247.0130S ribosomal protein S15P/S13e OS=Ignicoccus hosp... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC08001E12SK PhyRootSw1 Citrus sinensis cDNA clone C08001E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300726 ID=CX300726; Name=CX300726; organism=Citrus sinensis; type=EST; length=495bp
GCGGCTTGTTGCAGTACAAAGTTGAACACAAAGCTTGCTGCTTCACCTCC
GTCGACGTCACCATGGGTCGTATGCACAGTCGCGGTAAGGGTATTTCTGC
TTCAGCTTTGCCTTACAAGAGAACACCACCAAGTTGGCTCAAGATTTCCA
GCCAAGATGTTGAGGATAACATCTGTAAGTTTGCAAAGAAGGGTTTGACT
CCATCACAGATTGGTGTTATTCTTCGTGACTCTCACGGTATTGCCCAGGT
TAAGAGCGTTACTGGAAGCAAGATTTTGCGTATCCTCAAGGCTCATGGAC
TCGCACCTGAAATTCCTGAGGATCTGTACCACCTCATCAAGAAGGCTGTT
GCTATTAGGAAGCATTTGGAAAGGAACAGGAAGGACAAGGATTCCAAGTT
CCGCTTGATTCTTGTTGAAAGCAGGATTCACAGGCTTGCTCGCTACTACA
AGAAAACCAAGAAGCTTCCTCCTGTCTGGAAATATGAGTCTACTA
back to top