CX300726

Overview
NameCX300726
Unique NameCX300726
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length495
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300726 vs. ExPASy Swiss-Prot
Match: RS15_UNCMA (30S ribosomal protein S15P/S13e OS=Uncultured methanogenic archaeon RC-I GN=rps15p PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 3.166e-32
Identity = 64/141 (45.39%), Postives = 91/141 (64.54%), Query Frame = 3
Query:   63 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY 485
            M +MH+R KG S S  P ++TPP+W  +S ++VE  + K   +  T SQ+G+ILRD +G+  +  VTG K+  ILK +G  P++PEDL +LIKKA+ + KHL+ N KD  +K  L L ES++ RL +YY  T  LP  W Y
Sbjct:    1 MAKMHTRRKGRSRSTRPVRKTPPAWFTMSKEEVEKLVVKTYGQNATTSQVGIILRDKYGVPDITQVTGKKVTAILKENGTGPKLPEDLVNLIKKAIRLHKHLDENHKDLHNKRALQLTESKVRRLVKYYHATGVLPMDWVY 141          
BLAST of CX300726 vs. ExPASy Swiss-Prot
Match: RS15_ARCFU (30S ribosomal protein S15P/S13e OS=Archaeoglobus fulgidus GN=rps15p PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 5.401e-32
Identity = 68/141 (48.23%), Postives = 95/141 (67.38%), Query Frame = 3
Query:   63 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY 485
            M R+H+R +G S S   Y+ +PP W+ +S ++VE  + +   +G  PS IG+ILRD +GI  VK VTG KI +ILK HG+  + PEDL  LIKKA+ +R HLE +RKDK ++  L L+E++I RL+ YYK+   LP  WKY
Sbjct:    1 MARIHARRRGKSGSKRIYRDSPPEWVDMSPEEVEKKVLELYNEGYEPSMIGMILRDRYGIPSVKQVTGKKIQKILKEHGVEIKYPEDLKALIKKALKLRAHLEVHRKDKHNRRGLQLIEAKIWRLSSYYKEKGVLPADWKY 141          
BLAST of CX300726 vs. ExPASy Swiss-Prot
Match: RS15_PYRIL (30S ribosomal protein S15P/S13e OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps15p PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 9.213e-32
Identity = 67/133 (50.38%), Postives = 92/133 (69.17%), Query Frame = 3
Query:   87 KGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY 485
            KG S S  P   T P+W++ +  +VE  + + A++G  PSQIG+ILRD +GI  VK +TG K+ +IL+ HG+  EIPEDL +LIK+A+ IRKHLE + KD  S+  L LVES+IHRL +YYK+  KLP  + Y
Sbjct:    9 KGRSRSVRPAHPTVPTWIQYTPDEVEQLVVELARRGFPPSQIGIILRDQYGIPLVKPITGKKLTKILEEHGIRQEIPEDLLNLIKRALRIRKHLEEHPKDMASRRGLQLVESKIHRLIKYYKRVGKLPKEFVY 141          
BLAST of CX300726 vs. ExPASy Swiss-Prot
Match: RS15_METLZ (30S ribosomal protein S15P/S13e OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps15p PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 9.213e-32
Identity = 64/142 (45.07%), Postives = 97/142 (68.31%), Query Frame = 3
Query:   63 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYE 488
            M RMH+R +GI++S  PY++  P+W     +++E  I +  K GLT +QIG++LRD HG+  VK  TG +I  I++ + L  +IPEDL +L+ KA+ +RKHLE+NRKD  +K +L L E+++ RL +YY  TK+LP  W Y+
Sbjct:    1 MARMHARRRGIASSVRPYRKEVPAWSNSDVKEIEGKIVELRKAGLTCAQIGLVLRDKHGVPNVKLATGKRINAIVRENDLDTDIPEDLRNLMHKALMMRKHLEQNRKDLHNKRQLQLTEAKVRRLVKYYVGTKRLPLGWVYK 142          
BLAST of CX300726 vs. ExPASy Swiss-Prot
Match: RS15_SULTO (30S ribosomal protein S15P/S13e OS=Sulfolobus tokodaii GN=rps15p PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.571e-31
Identity = 67/136 (49.26%), Postives = 93/136 (68.38%), Query Frame = 3
Query:   81 RGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYE 488
            R  G S S  P +   P W++ + ++VE  + + AKKG +PS IG+ILRD +GI  VK +TG K+ +IL+  GLAP+IPEDL++LI+KA  +R+HL  + KDK +K  L  +ES+I RLA YYK+  KLP  WKYE
Sbjct:    5 RPNGKSHSTRPVRSGAPKWVRFTREEVELLVEELAKKGYSPSMIGIILRDQYGIPLVKQITGKKLTKILEEKGLAPKIPEDLFNLIRKAANVRRHLFEHPKDKRAKKGLEEIESKIRRLADYYKRIGKLPKEWKYE 140          
BLAST of CX300726 vs. ExPASy Swiss-Prot
Match: RS15_PYRAE (30S ribosomal protein S15P/S13e OS=Pyrobaculum aerophilum GN=rps15p PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.571e-31
Identity = 65/133 (48.87%), Postives = 94/133 (70.68%), Query Frame = 3
Query:   87 KGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY 485
            KG S S  P   T P+W++ + ++VE  + + A++G  PSQIG+ILRD +GI  V+ +TG K+ +IL+ HG+  E+PEDL +LI++A+ IRKHLE + KD  S+  L LVES+IHRL +YYK+  KLPP + Y
Sbjct:    9 KGRSRSVRPAHPTVPTWIQYTPEEVEQLVVELARRGFQPSQIGLILRDQYGIPLVRPITGKKLTKILEEHGIKYELPEDLLNLIRRALRIRKHLEEHPKDMASRRGLQLVESKIHRLVKYYKRVGKLPPDFVY 141          
BLAST of CX300726 vs. ExPASy Swiss-Prot
Match: RS15_PYRAB (30S ribosomal protein S15P/S13e OS=Pyrococcus abyssi GN=rps15p PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.571e-31
Identity = 71/149 (47.65%), Postives = 95/149 (63.76%), Query Frame = 3
Query:   63 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSK-------ILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYE 488
            M RMH+R +G S S  P +  PP WL+ + +D+E+ + K  K+G + + IG ILRD +GI  VK             I RIL+ HGLAPEIPEDL  LIK+AV +RKHLE++ KD  S   L L+ES+I RL +YYK+  KLP  W+Y+
Sbjct:    1 MARMHARKRGKSGSKRPPRTAPPIWLEYTVEDIENLVVKLRKEGYSTAMIGTILRDQYGIPTVKLFRDPDNPNRKLTITRILEKHGLAPEIPEDLMFLIKRAVNLRKHLEQHPKDLHSMRGLQLIESKIRRLVKYYKRKGKLPKDWRYD 149          
BLAST of CX300726 vs. ExPASy Swiss-Prot
Match: RS15_PYRAR (30S ribosomal protein S15P/S13e OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps15p PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 2.681e-31
Identity = 64/133 (48.12%), Postives = 94/133 (70.68%), Query Frame = 3
Query:   87 KGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY 485
            KG S S  P   T P+W++ + ++VE    + A++G  PSQIG++LRD +GI  VKS+TG K++++L+ HG+  EIPEDL +LI++A+ IRKHLE + KD  S+  L LVES+IHRL +YYK+  +LP  + Y
Sbjct:   12 KGRSGSVRPAHPTVPTWIQYTPEEVEQLAVELARRGFQPSQIGIVLRDQYGIPLVKSITGKKLVKVLEEHGIKYEIPEDLLNLIRRALRIRKHLEEHPKDMSSRRGLQLVESKIHRLIKYYKRVGRLPRDFVY 144          
BLAST of CX300726 vs. ExPASy Swiss-Prot
Match: RS15_SULSO (30S ribosomal protein S15P/S13e OS=Sulfolobus solfataricus GN=rps15p PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 5.972e-31
Identity = 64/136 (47.06%), Postives = 92/136 (67.65%), Query Frame = 3
Query:   81 RGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYE 488
            R KG S S  P +   P W++++ ++VE  + + AK+G TPS IG+ILRD +GI  VK + G K+ +IL+  GLAP+IPEDL++LI+KAV +R+H+    +DK +K  L  +ES+I RL RYYK   KLP  W Y+
Sbjct:    5 RAKGKSHSIRPARAGAPKWVRLTREEVEMLVEELAKRGYTPSMIGIILRDQYGIPLVKQIVGKKVTQILEERGLAPQIPEDLFNLIRKAVNVRRHINEYPRDKTAKKGLEEIESKIRRLTRYYKGIGKLPQEWVYD 140          
BLAST of CX300726 vs. ExPASy Swiss-Prot
Match: RS15_NITMS (30S ribosomal protein S15P/S13e OS=Nitrosopumilus maritimus (strain SCM1) GN=rps15p PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 5.972e-31
Identity = 63/143 (44.06%), Postives = 95/143 (66.43%), Query Frame = 3
Query:   63 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYES 491
            MGRMH+   G S S  P     PSW+  S  ++E+ + K++K GLTPSQIG+ LRD H I  +K +T   I  IL+ + L  E+PEDL +++KKAV +++HL+ N+ D+ +   L L+E+++HRL+ YYKK  ++P  WKY+S
Sbjct:    1 MGRMHTHRHGKSHSIRPATLRAPSWITQSPAEIEELVIKYSKDGLTPSQIGIKLRDQHSIPLIKPITKKTIGEILEENDLKAEMPEDLENIVKKAVGLQRHLKENKGDRRNVRSLELIEAKVHRLSVYYKKIGRIPATWKYKS 143          
The following BLAST results are available for this feature:
BLAST of CX300726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS15_UNCMA3.166e-3245.3930S ribosomal protein S15P/S13e OS=Uncultured meth... [more]
RS15_ARCFU5.401e-3248.2330S ribosomal protein S15P/S13e OS=Archaeoglobus f... [more]
RS15_PYRIL9.213e-3250.3830S ribosomal protein S15P/S13e OS=Pyrobaculum isl... [more]
RS15_METLZ9.213e-3245.0730S ribosomal protein S15P/S13e OS=Methanocorpuscu... [more]
RS15_SULTO1.571e-3149.2630S ribosomal protein S15P/S13e OS=Sulfolobus toko... [more]
RS15_PYRAE1.571e-3148.8730S ribosomal protein S15P/S13e OS=Pyrobaculum aer... [more]
RS15_PYRAB1.571e-3147.6530S ribosomal protein S15P/S13e OS=Pyrococcus abys... [more]
RS15_PYRAR2.681e-3148.1230S ribosomal protein S15P/S13e OS=Pyrobaculum ars... [more]
RS15_SULSO5.972e-3147.0630S ribosomal protein S15P/S13e OS=Sulfolobus solf... [more]
RS15_NITMS5.972e-3144.0630S ribosomal protein S15P/S13e OS=Nitrosopumilus ... [more]

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Properties
Property NameValue
Genbank descriptionC08001E12SK PhyRootSw1 Citrus sinensis cDNA clone C08001E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300726 ID=CX300726; Name=CX300726; organism=Citrus sinensis; type=EST; length=495bp
GCGGCTTGTTGCAGTACAAAGTTGAACACAAAGCTTGCTGCTTCACCTCC
GTCGACGTCACCATGGGTCGTATGCACAGTCGCGGTAAGGGTATTTCTGC
TTCAGCTTTGCCTTACAAGAGAACACCACCAAGTTGGCTCAAGATTTCCA
GCCAAGATGTTGAGGATAACATCTGTAAGTTTGCAAAGAAGGGTTTGACT
CCATCACAGATTGGTGTTATTCTTCGTGACTCTCACGGTATTGCCCAGGT
TAAGAGCGTTACTGGAAGCAAGATTTTGCGTATCCTCAAGGCTCATGGAC
TCGCACCTGAAATTCCTGAGGATCTGTACCACCTCATCAAGAAGGCTGTT
GCTATTAGGAAGCATTTGGAAAGGAACAGGAAGGACAAGGATTCCAAGTT
CCGCTTGATTCTTGTTGAAAGCAGGATTCACAGGCTTGCTCGCTACTACA
AGAAAACCAAGAAGCTTCCTCCTGTCTGGAAATATGAGTCTACTA
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