CX300726

Overview
NameCX300726
Unique NameCX300726
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length495
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300726 vs. ExPASy Swiss-Prot
Match: RS15_PYRHO (30S ribosomal protein S15P/S13e OS=Pyrococcus horikoshii GN=rps15p PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 7.799e-31
Identity = 70/149 (46.98%), Postives = 94/149 (63.09%), Query Frame = 3
Query:   63 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSK-------ILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYE 488
            M RMH+R +G S S  P +  PP WL  + +D+E+ + K  K+G + + IG ILRD +GI  VK             I RIL+ HGLAPEIPEDL  LI++AV +RKHLE++ KD  S   L L+ES+I RL +YYK+  KLP  W+Y+
Sbjct:    1 MARMHARKRGKSGSKRPPRTAPPIWLDYTVEDIENLVVKLRKEGYSTAMIGTILRDQYGIPTVKLFRDPDNPNRKLTITRILEKHGLAPEIPEDLMFLIRRAVNLRKHLEQHPKDLHSMRGLQLIESKIRRLVKYYKRKGKLPRDWRYD 149          
BLAST of CX300726 vs. ExPASy Swiss-Prot
Match: RS15_METMA (30S ribosomal protein S15P/S13e OS=Methanosarcina mazei GN=rps15p PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 7.799e-31
Identity = 66/142 (46.48%), Postives = 92/142 (64.79%), Query Frame = 3
Query:   63 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYE 488
            M +MH++ KG S+S  P +  PP W KI + +V        K+G++ S+IG+ILRD +G+   K VTG KI  ILK + +AP +PEDL +LI KA+ +RKHL  N+KD  +K  L L ES+I RL +YYK+ K LP  W Y+
Sbjct:    1 MAKMHTKRKGKSSSTRPNRTEPPEWCKIGADEVTTITLDLWKQGVSTSEIGMILRDRYGVPDAKLVTGKKITTILKENNVAPNLPEDLTNLIVKALGLRKHLSTNKKDVHNKRALNLTESKIRRLVKYYKQEKVLPRDWFYK 142          
BLAST of CX300726 vs. ExPASy Swiss-Prot
Match: RS15_PYRCJ (30S ribosomal protein S15P/S13e OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps15p PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.019e-30
Identity = 64/133 (48.12%), Postives = 93/133 (69.92%), Query Frame = 3
Query:   87 KGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY 485
            KG S+S  P   T P+W++ + ++VE    + A++G  PSQIG+ILRD +GI  VK +TG K+ +IL+ HG+  E+PEDL +LI++A+ IRKHLE + KD  S+  L LVES+IHRL +YYK+  K+P  + Y
Sbjct:    9 KGRSSSVRPPHPTVPTWIQYTPEEVEQLAVELARRGFPPSQIGIILRDQYGIPLVKPITGKKLTKILEEHGIKQELPEDLLNLIRRALRIRKHLEEHPKDMASRRGLQLVESKIHRLIKYYKRVGKIPQDFVY 141          
BLAST of CX300726 vs. ExPASy Swiss-Prot
Match: RS15_METAC (30S ribosomal protein S15P/S13e OS=Methanosarcina acetivorans GN=rps15p PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.019e-30
Identity = 63/142 (44.37%), Postives = 93/142 (65.49%), Query Frame = 3
Query:   63 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYE 488
            M +MH++ KG S+S  P +  PP W KI + +V   +    K+G++ ++IG++LRD +G+   K +TG K+  ILK + +AP IPEDL +LI KA+ +RKHL  N+KD  +K  L L ES+I RL +YYK+ K LP  W Y+
Sbjct:    1 MAKMHTKRKGKSSSTRPIRTDPPEWCKIGADEVTTIVLDLWKQGVSTAEIGMVLRDRYGVPDAKLITGKKVTTILKENNVAPNIPEDLTNLIVKALGLRKHLSVNKKDVHNKRSLNLTESKIRRLVKYYKQEKVLPRDWFYK 142          
BLAST of CX300726 vs. ExPASy Swiss-Prot
Match: RS15_CENSY (30S ribosomal protein S15P/S13e OS=Cenarchaeum symbiosum GN=rps15p PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.019e-30
Identity = 63/143 (44.06%), Postives = 94/143 (65.73%), Query Frame = 3
Query:   63 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYES 491
            MGR+HS   G S S  P     PSW++    +VED I K+AK+GL PSQIG  LRD H I   + +TG  + +I++ HG  PE+PEDL ++++KAV +++HL  N+ D+ +   L L+E+++HRL  YYK+  ++P  WKY+S
Sbjct:    1 MGRLHSHRHGKSHSIRPSSPKAPSWIQ-GPGEVEDLIVKYAKEGLAPSQIGSKLRDQHAIPLTRPITGKSVTQIMEEHGATPELPEDLNNIVQKAVGLQRHLRANKGDRRNVRSLELIEAKVHRLDVYYKRIGRIPKDWKYKS 142          
BLAST of CX300726 vs. ExPASy Swiss-Prot
Match: RS15_CALMQ (30S ribosomal protein S15P/S13e OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps15p PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.019e-30
Identity = 68/133 (51.13%), Postives = 90/133 (67.67%), Query Frame = 3
Query:   87 KGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY 485
            +G S S  P  +T P WL  S +DVE  + + A++G TPS IGVILRD +GI  VK VT  +I  IL+ +GL P+IPEDL  LI++AV IR+HLE + KD  +K  L+L ES+IHRL +YYK+T  LP  + Y
Sbjct:    9 RGSSGSVRPATKTIPPWLSYSPEDVERLVVELARRGFTPSLIGVILRDQYGIPLVKIVTNKRITEILEENGLKPQIPEDLMALIRRAVNIRRHLEEHPKDMSAKKGLLLTESKIHRLIKYYKRTGVLPLDFTY 141          
BLAST of CX300726 vs. ExPASy Swiss-Prot
Match: RS15_PYRFU (30S ribosomal protein S15P/S13e OS=Pyrococcus furiosus GN=rps15p PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.737e-30
Identity = 68/149 (45.64%), Postives = 95/149 (63.76%), Query Frame = 3
Query:   63 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSK-------ILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYE 488
            M RMH+R +G S S  P +  PP W++ + +++E+ + K  K+G + + IG ILRD +GI  VK             I RIL+ HGLAPEIPEDL  LI++AV +RKHLE++ KD  S   L L+ES+I RL +YYK+  KLP  W+Y+
Sbjct:    1 MARMHARKRGKSGSKRPPRTAPPIWVEYTVEEIENLVVKLRKEGYSTAMIGTILRDQYGIPSVKLFKDPDNPNRNLTITRILEKHGLAPEIPEDLMFLIRRAVNLRKHLEQHPKDLHSMRGLQLIESKIRRLVKYYKRKGKLPKNWRYD 149          
BLAST of CX300726 vs. ExPASy Swiss-Prot
Match: RS15_METVS (30S ribosomal protein S15P/S13e OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps15p PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.269e-30
Identity = 65/141 (46.10%), Postives = 90/141 (63.83%), Query Frame = 3
Query:   63 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY 485
            M R+HS  +G S S  P +   P W+ +S+++V+  I + AK G   + IG ILRD +GI  VK VTG  +  I+K  G   E+PEDL++L+KKA+ +R HLE N +D  SK  L L+ES+I RL +YYK TK LP  W+Y
Sbjct:    1 MARLHSGKRGSSGSTKPLRTEVPEWVSMSAEEVQAKIVEMAKDGNQSAIIGNILRDMYGIPNVKLVTGKSVSSIMKDAGFYSEVPEDLFNLMKKAINLRNHLENNPRDIHSKVGLNLIESKIRRLVKYYKGTKVLPATWRY 141          
BLAST of CX300726 vs. ExPASy Swiss-Prot
Match: RS15_METHJ (30S ribosomal protein S15P/S13e OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps15p PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.269e-30
Identity = 61/142 (42.96%), Postives = 93/142 (65.49%), Query Frame = 3
Query:   63 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYE 488
            M RMH+R +GIS S  PY+   P W     + +   I    ++G + ++IG+++RD +G+  VK  TG KI +IL+ + LA EIPEDL +LI+KA+ +RKHL  N++D  +K +L+L ES++ RL +YY  +KKLP  W Y+
Sbjct:    1 MARMHARRRGISRSVRPYRTQAPEWSNTDKEAIIKQIVDLRRQGSSTAEIGLVMRDKYGVPSVKLATGKKITQILRDNDLASEIPEDLRNLIEKALGMRKHLAENKRDIHNKRQLMLTESKVRRLVKYYVSSKKLPKDWVYK 142          
BLAST of CX300726 vs. ExPASy Swiss-Prot
Match: RS15_METM7 (30S ribosomal protein S15P/S13e OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps15p PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 3.871e-30
Identity = 63/141 (44.68%), Postives = 89/141 (63.12%), Query Frame = 3
Query:   63 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY 485
            M R+HS  +G S S  P +   P W+ +S++D+E  I + AK G   + IG ILRD +G+  VK VTG  +  I+K  G   E+PEDL++L+KKA+ +R HLE N +D  S   L L+ES+I RL +YY+ TK LP  W+Y
Sbjct:    1 MARLHSGKRGSSGSTRPLRTEVPEWVSMSAEDIEAKIVEMAKDGKQSAIIGNILRDMYGVPSVKLVTGKSVSSIMKEAGFYTEVPEDLFNLMKKAINLRNHLENNPRDTHSTVGLKLIESKIRRLVKYYRGTKVLPAKWRY 141          
The following BLAST results are available for this feature:
BLAST of CX300726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS15_PYRHO7.799e-3146.9830S ribosomal protein S15P/S13e OS=Pyrococcus hori... [more]
RS15_METMA7.799e-3146.4830S ribosomal protein S15P/S13e OS=Methanosarcina ... [more]
RS15_PYRCJ1.019e-3048.1230S ribosomal protein S15P/S13e OS=Pyrobaculum cal... [more]
RS15_METAC1.019e-3044.3730S ribosomal protein S15P/S13e OS=Methanosarcina ... [more]
RS15_CENSY1.019e-3044.0630S ribosomal protein S15P/S13e OS=Cenarchaeum sym... [more]
RS15_CALMQ1.019e-3051.1330S ribosomal protein S15P/S13e OS=Caldivirga maqu... [more]
RS15_PYRFU1.737e-3045.6430S ribosomal protein S15P/S13e OS=Pyrococcus furi... [more]
RS15_METVS2.269e-3046.1030S ribosomal protein S15P/S13e OS=Methanococcus v... [more]
RS15_METHJ2.269e-3042.9630S ribosomal protein S15P/S13e OS=Methanospirillu... [more]
RS15_METM73.871e-3044.6830S ribosomal protein S15P/S13e OS=Methanococcus m... [more]

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Properties
Property NameValue
Genbank descriptionC08001E12SK PhyRootSw1 Citrus sinensis cDNA clone C08001E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300726 ID=CX300726; Name=CX300726; organism=Citrus sinensis; type=EST; length=495bp
GCGGCTTGTTGCAGTACAAAGTTGAACACAAAGCTTGCTGCTTCACCTCC
GTCGACGTCACCATGGGTCGTATGCACAGTCGCGGTAAGGGTATTTCTGC
TTCAGCTTTGCCTTACAAGAGAACACCACCAAGTTGGCTCAAGATTTCCA
GCCAAGATGTTGAGGATAACATCTGTAAGTTTGCAAAGAAGGGTTTGACT
CCATCACAGATTGGTGTTATTCTTCGTGACTCTCACGGTATTGCCCAGGT
TAAGAGCGTTACTGGAAGCAAGATTTTGCGTATCCTCAAGGCTCATGGAC
TCGCACCTGAAATTCCTGAGGATCTGTACCACCTCATCAAGAAGGCTGTT
GCTATTAGGAAGCATTTGGAAAGGAACAGGAAGGACAAGGATTCCAAGTT
CCGCTTGATTCTTGTTGAAAGCAGGATTCACAGGCTTGCTCGCTACTACA
AGAAAACCAAGAAGCTTCCTCCTGTCTGGAAATATGAGTCTACTA
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