CX300726

Overview
NameCX300726
Unique NameCX300726
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length495
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300726 vs. ExPASy Swiss-Prot
Match: RS15_METTH (30S ribosomal protein S15P/S13e OS=Methanobacterium thermoautotrophicum GN=rps15p PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.054e-27
Identity = 59/120 (49.17%), Postives = 85/120 (70.83%), Query Frame = 3
Query:  129 PSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYE 488
            P W++ S++++ED I K  ++G + S+IG+ILRD HGI  VK+VTG KI +IL+ H + PE PEDL +LI+KAV IR HL+ + KD  ++  L +VES+I RL RYY +   LP  W+Y+
Sbjct:    6 PDWVEYSNEEIEDLIVKLYREGNSTSKIGIILRDQHGIPSVKAVTGLKITQILEKHEMKPEYPEDLMNLIRKAVNIRDHLKEHPKDLHTRRGLQIVESKIRRLVRYYVREGVLPEGWRYD 125          
BLAST of CX300726 vs. ExPASy Swiss-Prot
Match: RS15_METS3 (30S ribosomal protein S15P/S13e OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps15p PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.165e-26
Identity = 60/119 (50.42%), Postives = 79/119 (66.39%), Query Frame = 3
Query:  129 PSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY 485
            P W+  S +++E+ I KF K+G + S+IG+ILRD +GI  VK VTG +I +ILK +  A + PEDL +LIK+AV IR HL  N KD  SK  L ++ESRI RLA YY     LP  W+Y
Sbjct:    4 PEWVTYSDEEIEEMILKFNKEGKSTSEIGIILRDQYGIPSVKEVTGERITQILKRNDQAGKYPEDLMNLIKRAVNIRDHLAENPKDLHSKRGLTIIESRIRRLASYYVNEGALPEGWRY 122          
BLAST of CX300726 vs. ExPASy Swiss-Prot
Match: RS15_METST (30S ribosomal protein S15P/S13e OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps15p PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.522e-26
Identity = 59/120 (49.17%), Postives = 80/120 (66.67%), Query Frame = 3
Query:  129 PSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYE 488
            P W++ S +++E+ I K  K+G + SQIG+ LRD HGI   K+V G KI  ILK +G   E PEDL +LIK+AV IR+HLE N KD  +K  LI +ES+I RL +YY +   LP  W+Y+
Sbjct:    5 PEWVEQSPEEIEELIVKLHKEGQSTSQIGITLRDQHGIPNTKAVLGEKITDILKRNGTDFEYPEDLLNLIKRAVNIREHLEENPKDIHTKRGLIKIESKIRRLVKYYTRNNVLPEGWRYD 124          
BLAST of CX300726 vs. ExPASy Swiss-Prot
Match: RS15_NANEQ (30S ribosomal protein S15P/S13e OS=Nanoarchaeum equitans GN=rps15p PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.596e-26
Identity = 58/137 (42.34%), Postives = 82/137 (59.85%), Query Frame = 3
Query:   75 HSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY 485
            H R  G S S  P + T P W     + VE+ I + AK+G +P+ IG+ILRD +GI  V+   G  +   L+  GL P+IP DL +L+K+A  + KH+E N +D  +K    L+ S+IHRLA+YYK+   LP  WKY
Sbjct:    7 HKRYHGQSGSKRPLRTTKPEWAPYDKEFVENKIIELAKQGYSPAMIGLILRDQYGIPDVRLYIGKSLQDFLEEKGLLPDIPWDLIYLLKRAYRVYKHIELNPRDTQAKRNYQLIISKIHRLAKYYKRKGVLPKDWKY 143          
BLAST of CX300726 vs. ExPASy Swiss-Prot
Match: RS15_METB6 (30S ribosomal protein S15P/S13e OS=Methanoregula boonei (strain 6A8) GN=rps15p PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 9.866e-26
Identity = 61/142 (42.96%), Postives = 87/142 (61.27%), Query Frame = 3
Query:   63 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYE 488
            M RMH+R +G S+S  P +   P+W       +E  I    K+G + S IG++LRD +G+  VK VTG  I  IL  + ++ EIPEDL  L+ KA+ +RKHL  N KD  +K +L LVE++I RL +YY  T+KLP  + Y+
Sbjct:    1 MARMHARRRGKSSSVRPARNEAPAWSNTDKAAIEKLIVDLRKEGTSASMIGLVLRDRYGVPDVKMVTGKSIGDILTENKVSSEIPEDLRDLMVKALGLRKHLGENPKDLHNKRQLHLVEAKIRRLVKYYIGTRKLPAGFTYK 142          
BLAST of CX300726 vs. ExPASy Swiss-Prot
Match: RS15_METTP (30S ribosomal protein S15P/S13e OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps15p PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.174e-24
Identity = 59/157 (37.58%), Postives = 86/157 (54.78%), Query Frame = 3
Query:   63 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLER----------------NRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKY 485
            M RMHSR KG S S  P     P W  +S +++E  I    ++G++ + IG+ LRD +G+  +K + G  +   L+     PEIPEDL +L++KA+ +R+HL R                  KD  +K  L LVES+I RL RYYK+  +LP  W+Y
Sbjct:    1 MARMHSRKKGSSGSRPPVVDKLPEWCDVSKEELEKTIMTLHERGMSNAMIGLTLRDQYGVPNLKLILGKSLSSFLRDRNALPEIPEDLSNLMRKALRLRRHLLRAQPRGTVSDTSISRLPRTKDIHNKRALQLVESKIRRLVRYYKQVGRLPATWEY 157          
BLAST of CX300726 vs. ExPASy Swiss-Prot
Match: RS15_PICTO (30S ribosomal protein S15P/S13e OS=Picrophilus torridus GN=rps15p PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.206e-23
Identity = 55/142 (38.73%), Postives = 85/142 (59.86%), Query Frame = 3
Query:   63 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYE 488
            M RMH+R +G S S     R  PSW++ S  ++++ I K  K+G+T S IG+ LRD + I   + V   K+ ++LK + L  ++PEDL  LI++     KHL  N+ D ++K +  L+ S++ RL RYYK+T +LP  W  E
Sbjct:    1 MARMHTRKRGRSGSKRIEVRERPSWIQYSDDEIKEMIVKMRKQGMTKSMIGIRLRDQYAIPGTRPVLHMKLGQVLKENNLESDVPEDLQALIERYKRAMKHLSLNKHDMNNKRKAQLIMSKMLRLIRYYKRTSRLPQDWSLE 142          
BLAST of CX300726 vs. ExPASy Swiss-Prot
Match: RS15_THEAC (30S ribosomal protein S15P/S13e OS=Thermoplasma acidophilum GN=rps15p PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 7.817e-23
Identity = 57/139 (41.01%), Postives = 84/139 (60.43%), Query Frame = 3
Query:   63 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 479
            M RMH+R +G S S   Y    PSW++ S  +V + I    K G+ PS IG+ LRD +GI  VK+V G K+ ++L   GL  ++PEDL +LIK+   + KH+E N KD+ +K    L+ +++ RL +YYK+T  L   W
Sbjct:    1 MARMHTRKRGRSGSKKVYG-VQPSWIQYSKDEVINTIVNLKKSGVPPSVIGIKLRDQYGIPTVKAVLGMKLGKVLSEKGLKDDVPEDLGNLIKRYNNVAKHVELNPKDQANKRGRDLIMAKMLRLVKYYKRTGVLDEKW 138          
BLAST of CX300726 vs. ExPASy Swiss-Prot
Match: RS15_HALSA (30S ribosomal protein S15P/S13e OS=Halobacterium salinarium GN=rps15p PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 7.817e-23
Identity = 55/137 (40.15%), Postives = 80/137 (58.39%), Query Frame = 3
Query:   63 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSH----GIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTK 461
            M RMH+R +G S S  P    PP W  +    +E+ + + A++G  PSQIG+ LRD       +  VK  TG K+  IL+AH   PE+PED  +L++KAV + +H+E N +D  +K  L   +S+I RLA YY+  K
Sbjct:    1 MARMHTRRRGSSGSDRPTADEPPEWSDVDEDAIEERVVELAEQGHDPSQIGLKLRDEGVQGTPVPDVKLATGKKVTEILEAHDAEPELPEDFRNLLEKAVRLHEHVEANGQDHQNKRALQNTQSKIRRLADYYRGDK 137          
BLAST of CX300726 vs. ExPASy Swiss-Prot
Match: RS15_HALWD (30S ribosomal protein S15P/S13e OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps15p PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.741e-22
Identity = 54/134 (40.30%), Postives = 80/134 (59.70%), Query Frame = 3
Query:   63 MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSH----GIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVESRIHRLARYYK 452
            M RMH+R +G S S  P    PP W  I +  +E+ + + A++G  PSQIG+ LRD       I  VK  T  K+  IL+ H   PE+PEDL +L+++A+ +R+H++ N +D  +K  L   ES+I RLA YY+
Sbjct:    1 MARMHTRRRGSSGSDKPVADDPPEWSDIDADAIEERVVELAEQGHEPSQIGMKLRDEGVKGTPIPDVKLATDKKVTTILEEHNAKPELPEDLRNLMERAIRLRRHVDENGQDMQNKRALQNTESKIRRLASYYR 134          
The following BLAST results are available for this feature:
BLAST of CX300726 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS15_METTH1.054e-2749.1730S ribosomal protein S15P/S13e OS=Methanobacteriu... [more]
RS15_METS31.165e-2650.4230S ribosomal protein S15P/S13e OS=Methanobrevibac... [more]
RS15_METST1.522e-2649.1730S ribosomal protein S15P/S13e OS=Methanosphaera ... [more]
RS15_NANEQ2.596e-2642.3430S ribosomal protein S15P/S13e OS=Nanoarchaeum eq... [more]
RS15_METB69.866e-2642.9630S ribosomal protein S15P/S13e OS=Methanoregula b... [more]
RS15_METTP3.174e-2437.5830S ribosomal protein S15P/S13e OS=Methanosaeta th... [more]
RS15_PICTO1.206e-2338.7330S ribosomal protein S15P/S13e OS=Picrophilus tor... [more]
RS15_THEAC7.817e-2341.0130S ribosomal protein S15P/S13e OS=Thermoplasma ac... [more]
RS15_HALSA7.817e-2340.1530S ribosomal protein S15P/S13e OS=Halobacterium s... [more]
RS15_HALWD1.741e-2240.3030S ribosomal protein S15P/S13e OS=Haloquadratum w... [more]

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Properties
Property NameValue
Genbank descriptionC08001E12SK PhyRootSw1 Citrus sinensis cDNA clone C08001E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300726 ID=CX300726; Name=CX300726; organism=Citrus sinensis; type=EST; length=495bp
GCGGCTTGTTGCAGTACAAAGTTGAACACAAAGCTTGCTGCTTCACCTCC
GTCGACGTCACCATGGGTCGTATGCACAGTCGCGGTAAGGGTATTTCTGC
TTCAGCTTTGCCTTACAAGAGAACACCACCAAGTTGGCTCAAGATTTCCA
GCCAAGATGTTGAGGATAACATCTGTAAGTTTGCAAAGAAGGGTTTGACT
CCATCACAGATTGGTGTTATTCTTCGTGACTCTCACGGTATTGCCCAGGT
TAAGAGCGTTACTGGAAGCAAGATTTTGCGTATCCTCAAGGCTCATGGAC
TCGCACCTGAAATTCCTGAGGATCTGTACCACCTCATCAAGAAGGCTGTT
GCTATTAGGAAGCATTTGGAAAGGAACAGGAAGGACAAGGATTCCAAGTT
CCGCTTGATTCTTGTTGAAAGCAGGATTCACAGGCTTGCTCGCTACTACA
AGAAAACCAAGAAGCTTCCTCCTGTCTGGAAATATGAGTCTACTA
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