CX300722

Overview
NameCX300722
Unique NameCX300722
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_PYRAR (30S ribosomal protein S5P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps5p PE=3 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 2.135e-30
Identity = 66/135 (48.89%), Postives = 94/135 (69.63%), Query Frame = 1
Query:    4 AGQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGY--WGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSKTYSF 402
            AG+R+ F+  +AVG+ +G++G+G+  AR+V  AI   +  AK+NL+PVRRG   W  +  +PH+VP  V GK GSV V LIPAP+G G+VA  V K +L +AG++DV++ T G +RT  N A+AVY+AL  TY F
Sbjct:   66 AGERSLFQAVVAVGNEDGYVGVGIGKARQVRQAIEKAVREAKLNLIPVRRGCGSWKCSCDEPHSVPFVVKGKSGSVEVTLIPAPKGVGLVAGDVAKAVLRLAGVKDVWTHTRGDTRTTLNFALAVYNALRNTYYF 200          
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_AERPE (30S ribosomal protein S5P OS=Aeropyrum pernix GN=rps5p PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.135e-30
Identity = 70/142 (49.30%), Postives = 92/142 (64.79%), Query Frame = 1
Query:    4 AGQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGY--WGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSKTYSFLTPDLWA 423
            AG+ TRF+  + VG+ +G++GLG   AR+   AI   I NAK+N++PVRRG   W    G+ H+VP  V GK GSV V L PAP+G+G+VA  V K +L +AGI DV++ T G +RT  N A A Y AL  TY F+TP  WA
Sbjct:   71 AGRITRFRAVVVVGNKDGYVGLGKGKARQFRFAIEKAIRNAKLNIIPVRRGCGSWECTCGEAHSVPFTVRGKSGSVEVILKPAPKGTGLVAGDVAKVVLRLAGISDVWTFTKGETRTSYNFARATYLALRNTYRFVTPADWA 212          
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_PYRIL (30S ribosomal protein S5P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps5p PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.789e-30
Identity = 67/135 (49.63%), Postives = 94/135 (69.63%), Query Frame = 1
Query:    4 AGQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGY--WGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSKTYSF 402
            AG+R++F+  +AVG+ +G++G+G+  A++V  AI   +  AK+NL PVRRG   W  +  +PH+VP  V GK GSV V LIPAP+G G+VA  V K +L +AGI+DV++ T G +RT  N AMAVY+AL  TY F
Sbjct:   66 AGERSQFQVVVAVGNEDGYVGVGIGKAKQVRQAIEKAVREAKLNLTPVRRGCGSWKCSCDEPHSVPFVVRGKSGSVEVTLIPAPKGVGLVAGDVAKVVLRLAGIKDVWTQTRGDTRTTLNFAMAVYNALRNTYYF 200          
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_IGNH4 (30S ribosomal protein S5P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps5p PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.060e-29
Identity = 66/141 (46.81%), Postives = 93/141 (65.96%), Query Frame = 1
Query:    4 AGQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGY--WGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSKTYSFLTPDLW 420
            AG+ TR +  + +G+ +G +GLG+  A+++  AI+  + NAK+N+ PVRRG   W    G+PH+VP  V GK GSV V L PAPRG+G+VA  V K +L  AGI+DV++ T G +RT  N A A ++AL +TY FL P  W
Sbjct:   67 AGRVTRLRVLVVIGNEDGLVGLGMGKAKQMRFAIQKALANAKLNITPVRRGCGSWECTCGEPHSVPFTVRGKSGSVEVILKPAPRGTGLVAGDVAKAVLRYAGIKDVWTHTEGETRTTHNFAKATFNALKQTYKFLAPWDW 207          
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_PYRCJ (30S ribosomal protein S5P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps5p PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.361e-29
Identity = 65/135 (48.15%), Postives = 93/135 (68.89%), Query Frame = 1
Query:    4 AGQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGY--WGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSKTYSF 402
            AG+R +F+  +AVG+ +G++G+G+  +R+V  AI      AK+N+ PVRRG   W  +  +PH+VP  VSGK GSV V LIPAP+G G+VA  V K +L +AGI+DV++ T G +RT  N A+AV++AL  TY F
Sbjct:   66 AGERNQFQAVVAVGNEDGYVGVGIGKSRQVRQAIEKATREAKLNITPVRRGCGSWKCSCDEPHSVPFVVSGKSGSVEVTLIPAPKGVGLVAGDVAKVVLRLAGIKDVWTKTRGDTRTTLNFALAVFNALRNTYYF 200          
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_STAMF (30S ribosomal protein S5P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps5p PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.083e-29
Identity = 65/141 (46.10%), Postives = 92/141 (65.25%), Query Frame = 1
Query:    4 AGQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGY--WGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSKTYSFLTPDLW 420
            AG+R+RF+  + VG+ +G +G+G   AR+   A+R  + NAK+N+ PVRRG   W    G+PH++P  V GK GSV V L PAP+G+G+VA    K +L MAGI+DV++ T G ++T  N A AV +AL  TY F+ P  W
Sbjct:   71 AGRRSRFRVVVVVGNEDGFVGVGSGKARQYLVALRKALRNAKLNITPVRRGCGSWECRCGEPHSIPFTVQGKSGSVVVVLKPAPKGTGLVAGDTAKAVLRMAGIKDVWTETFGKTKTTLNFAKAVVNALRNTYKFVAPVDW 211          
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_SULIN (30S ribosomal protein S5P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps5p PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 4.027e-29
Identity = 64/142 (45.07%), Postives = 93/142 (65.49%), Query Frame = 1
Query:    4 AGQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGY--WGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSKTYSFLTPDLWA 423
            AG+ +R+K  + +G+ +G++ +G   A+++  AI+  I +AKMN++PVRRG   W    G+PH++P KV GK GSV V L+PAP+G+G+V   V K LL  AGI D +S+T G +RT  N   A Y AL  TY+F+T   WA
Sbjct:   70 AGEISRYKVLVIMGNMDGYVSIGTGKAKQLRVAIQKAIRDAKMNILPVRRGCGSWQCTCGEPHSLPFKVVGKAGSVEVNLLPAPKGTGLVVGSVLKTLLTYAGIRDAWSTTKGETRTTENFVRAGYSALYNTYNFVTLQDWA 211          
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_PYRHO (30S ribosomal protein S5P OS=Pyrococcus horikoshii GN=rps5p PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 8.971e-29
Identity = 68/141 (48.23%), Postives = 94/141 (66.67%), Query Frame = 1
Query:    4 AGQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGY--WGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSKTYS-FLTPDL 417
            +G+R RF+   AVG+ +G++GLG+   REV  AIR  I  AK+N++ ++RG   W     +PH+VP  V GK GSVRVRLIP PRG G+V   V KK+L +AGI+DV+S T G +RT  N A AV++AL  T    +TP++
Sbjct:   77 SGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNIIEIKRGCGSWECRCRRPHSVPFAVEGKEGSVRVRLIPGPRGLGLVIGDVGKKILRLAGIQDVWSQTFGETRTTVNFAKAVFNALYNTNRVVVTPEM 217          
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_SULSO (30S ribosomal protein S5P OS=Sulfolobus solfataricus GN=rps5p PE=3 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.172e-28
Identity = 63/141 (44.68%), Postives = 92/141 (65.25%), Query Frame = 1
Query:    4 AGQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGY--WGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSKTYSFLTPDLW 420
            AG+ +R+K  + +G+ +G++ +G   A+++  AI+  I +AKMN++PVRRG   W    G+PH++P KV GK GSV V L+PAP+G+G+V   V K LL  AGI+D +S+T G +RT  N   A Y AL  TY F+T   W
Sbjct:   70 AGEISRYKVLVIMGNMDGYVSIGTGKAKQLRVAIQKAIRDAKMNIIPVRRGCGSWQCTCGEPHSLPFKVVGKAGSVEVDLLPAPKGTGLVVGSVLKTLLTYAGIKDAWSTTKGETRTTENFVRAGYSALYNTYKFVTLQDW 210          
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_PYRAB (30S ribosomal protein S5P OS=Pyrococcus abyssi GN=rps5p PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.172e-28
Identity = 67/141 (47.52%), Postives = 94/141 (66.67%), Query Frame = 1
Query:    4 AGQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGY--WGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSKTYS-FLTPDL 417
            +G+R RF+   AVG+ +G++GLG+   REV  AIR  I  AK+N++ ++RG   W     +PH+VP  V GK GSVRV+LIP PRG G+V   V KK+L +AGI+DV+S T G +RT  N A AV++AL  T    +TP++
Sbjct:   77 SGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNIIEIKRGCGSWECRCRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQDVWSQTLGETRTTVNFAKAVFNALYNTNKVVVTPEM 217          
The following BLAST results are available for this feature:
BLAST of CX300722 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
RS5_PYRAR2.135e-3048.8930S ribosomal protein S5P OS=Pyrobaculum arsenatic... [more]
RS5_AERPE2.135e-3049.3030S ribosomal protein S5P OS=Aeropyrum pernix GN=r... [more]
RS5_PYRIL2.789e-3049.6330S ribosomal protein S5P OS=Pyrobaculum islandicu... [more]
RS5_IGNH41.060e-2946.8130S ribosomal protein S5P OS=Ignicoccus hospitalis... [more]
RS5_PYRCJ2.361e-2948.1530S ribosomal protein S5P OS=Pyrobaculum calidifon... [more]
RS5_STAMF3.083e-2946.1030S ribosomal protein S5P OS=Staphylothermus marin... [more]
RS5_SULIN4.027e-2945.0730S ribosomal protein S5P OS=Sulfolobus islandicus... [more]
RS5_PYRHO8.971e-2948.2330S ribosomal protein S5P OS=Pyrococcus horikoshii... [more]
RS5_SULSO1.172e-2844.6830S ribosomal protein S5P OS=Sulfolobus solfataric... [more]
RS5_PYRAB1.172e-2847.5230S ribosomal protein S5P OS=Pyrococcus abyssi GN=... [more]

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Properties
Property NameValue
Genbank descriptionC08001E08SK PhyRootSw1 Citrus sinensis cDNA clone C08001E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300722 ID=CX300722; Name=CX300722; organism=Citrus sinensis; type=EST; length=607bp
ACCGCCGGTCAACGCACCCGCTTCAAGTGCTACATCGCTGTCGGTGATGG
CAACGGCCACATTGGTTTGGGTGTCAAGTGCGCTCGTGAAGTTGCCACTG
CTATCCGTGGAGGTATCATCAACGCCAAGATGAACCTTGTTCCAGTTCGT
CGTGGTTACTGGGGTCTTAACGCCGGTCAACCACACACTGTCCCTTGCAA
GGTCTCTGGAAAGTGCGGTTCCGTCCGTGTCAGATTGATCCCTGCCCCTC
GTGGTTCTGGTATCGTCGCTTCCGTTGTCCCAAAGAAGTTATTAAACATG
GCTGGTATTGAGGACGTTTACTCTTCCACCACTGGTCACTCCCGTACCAG
AGGTAACTTGGCAATGGCTGTCTACCACGCCTTATCCAAGACTTACAGCT
TCTTAACCCCTGACTTATGGGCTCCTACCCACTTCCAACCAACTCCTCAA
CAGGAATACTCTGATTTACTTGCCAAGAAGGCCAACAAATATTAAATTAC
TTTCATAGGATTGTGAGGAGAGGATAAGCGTGACTATTCTACGGTGCGAT
GTGCCGACCTCATATGATGTAATTTAATACAACAATATTCAAAAAAAAAA
AAAAAAA
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