CX300722
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_PYRAR (30S ribosomal protein S5P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps5p PE=3 SV=2) HSP 1 Score: 132.109 bits (331), Expect = 2.135e-30 Identity = 66/135 (48.89%), Postives = 94/135 (69.63%), Query Frame = 1 Query: 4 AGQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGY--WGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSKTYSF 402 AG+R+ F+ +AVG+ +G++G+G+ AR+V AI + AK+NL+PVRRG W + +PH+VP V GK GSV V LIPAP+G G+VA V K +L +AG++DV++ T G +RT N A+AVY+AL TY F Sbjct: 66 AGERSLFQAVVAVGNEDGYVGVGIGKARQVRQAIEKAVREAKLNLIPVRRGCGSWKCSCDEPHSVPFVVKGKSGSVEVTLIPAPKGVGLVAGDVAKAVLRLAGVKDVWTHTRGDTRTTLNFALAVYNALRNTYYF 200
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_AERPE (30S ribosomal protein S5P OS=Aeropyrum pernix GN=rps5p PE=3 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 2.135e-30 Identity = 70/142 (49.30%), Postives = 92/142 (64.79%), Query Frame = 1 Query: 4 AGQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGY--WGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSKTYSFLTPDLWA 423 AG+ TRF+ + VG+ +G++GLG AR+ AI I NAK+N++PVRRG W G+ H+VP V GK GSV V L PAP+G+G+VA V K +L +AGI DV++ T G +RT N A A Y AL TY F+TP WA Sbjct: 71 AGRITRFRAVVVVGNKDGYVGLGKGKARQFRFAIEKAIRNAKLNIIPVRRGCGSWECTCGEAHSVPFTVRGKSGSVEVILKPAPKGTGLVAGDVAKVVLRLAGISDVWTFTKGETRTSYNFARATYLALRNTYRFVTPADWA 212
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_PYRIL (30S ribosomal protein S5P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps5p PE=3 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 2.789e-30 Identity = 67/135 (49.63%), Postives = 94/135 (69.63%), Query Frame = 1 Query: 4 AGQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGY--WGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSKTYSF 402 AG+R++F+ +AVG+ +G++G+G+ A++V AI + AK+NL PVRRG W + +PH+VP V GK GSV V LIPAP+G G+VA V K +L +AGI+DV++ T G +RT N AMAVY+AL TY F Sbjct: 66 AGERSQFQVVVAVGNEDGYVGVGIGKAKQVRQAIEKAVREAKLNLTPVRRGCGSWKCSCDEPHSVPFVVRGKSGSVEVTLIPAPKGVGLVAGDVAKVVLRLAGIKDVWTQTRGDTRTTLNFAMAVYNALRNTYYF 200
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_IGNH4 (30S ribosomal protein S5P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps5p PE=3 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 1.060e-29 Identity = 66/141 (46.81%), Postives = 93/141 (65.96%), Query Frame = 1 Query: 4 AGQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGY--WGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSKTYSFLTPDLW 420 AG+ TR + + +G+ +G +GLG+ A+++ AI+ + NAK+N+ PVRRG W G+PH+VP V GK GSV V L PAPRG+G+VA V K +L AGI+DV++ T G +RT N A A ++AL +TY FL P W Sbjct: 67 AGRVTRLRVLVVIGNEDGLVGLGMGKAKQMRFAIQKALANAKLNITPVRRGCGSWECTCGEPHSVPFTVRGKSGSVEVILKPAPRGTGLVAGDVAKAVLRYAGIKDVWTHTEGETRTTHNFAKATFNALKQTYKFLAPWDW 207
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_PYRCJ (30S ribosomal protein S5P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps5p PE=3 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 2.361e-29 Identity = 65/135 (48.15%), Postives = 93/135 (68.89%), Query Frame = 1 Query: 4 AGQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGY--WGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSKTYSF 402 AG+R +F+ +AVG+ +G++G+G+ +R+V AI AK+N+ PVRRG W + +PH+VP VSGK GSV V LIPAP+G G+VA V K +L +AGI+DV++ T G +RT N A+AV++AL TY F Sbjct: 66 AGERNQFQAVVAVGNEDGYVGVGIGKSRQVRQAIEKATREAKLNITPVRRGCGSWKCSCDEPHSVPFVVSGKSGSVEVTLIPAPKGVGLVAGDVAKVVLRLAGIKDVWTKTRGDTRTTLNFALAVFNALRNTYYF 200
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_STAMF (30S ribosomal protein S5P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps5p PE=3 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 3.083e-29 Identity = 65/141 (46.10%), Postives = 92/141 (65.25%), Query Frame = 1 Query: 4 AGQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGY--WGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSKTYSFLTPDLW 420 AG+R+RF+ + VG+ +G +G+G AR+ A+R + NAK+N+ PVRRG W G+PH++P V GK GSV V L PAP+G+G+VA K +L MAGI+DV++ T G ++T N A AV +AL TY F+ P W Sbjct: 71 AGRRSRFRVVVVVGNEDGFVGVGSGKARQYLVALRKALRNAKLNITPVRRGCGSWECRCGEPHSIPFTVQGKSGSVVVVLKPAPKGTGLVAGDTAKAVLRMAGIKDVWTETFGKTKTTLNFAKAVVNALRNTYKFVAPVDW 211
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_SULIN (30S ribosomal protein S5P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps5p PE=3 SV=1) HSP 1 Score: 127.872 bits (320), Expect = 4.027e-29 Identity = 64/142 (45.07%), Postives = 93/142 (65.49%), Query Frame = 1 Query: 4 AGQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGY--WGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSKTYSFLTPDLWA 423 AG+ +R+K + +G+ +G++ +G A+++ AI+ I +AKMN++PVRRG W G+PH++P KV GK GSV V L+PAP+G+G+V V K LL AGI D +S+T G +RT N A Y AL TY+F+T WA Sbjct: 70 AGEISRYKVLVIMGNMDGYVSIGTGKAKQLRVAIQKAIRDAKMNILPVRRGCGSWQCTCGEPHSLPFKVVGKAGSVEVNLLPAPKGTGLVVGSVLKTLLTYAGIRDAWSTTKGETRTTENFVRAGYSALYNTYNFVTLQDWA 211
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_PYRHO (30S ribosomal protein S5P OS=Pyrococcus horikoshii GN=rps5p PE=3 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 8.971e-29 Identity = 68/141 (48.23%), Postives = 94/141 (66.67%), Query Frame = 1 Query: 4 AGQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGY--WGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSKTYS-FLTPDL 417 +G+R RF+ AVG+ +G++GLG+ REV AIR I AK+N++ ++RG W +PH+VP V GK GSVRVRLIP PRG G+V V KK+L +AGI+DV+S T G +RT N A AV++AL T +TP++ Sbjct: 77 SGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNIIEIKRGCGSWECRCRRPHSVPFAVEGKEGSVRVRLIPGPRGLGLVIGDVGKKILRLAGIQDVWSQTFGETRTTVNFAKAVFNALYNTNRVVVTPEM 217
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_SULSO (30S ribosomal protein S5P OS=Sulfolobus solfataricus GN=rps5p PE=3 SV=2) HSP 1 Score: 126.331 bits (316), Expect = 1.172e-28 Identity = 63/141 (44.68%), Postives = 92/141 (65.25%), Query Frame = 1 Query: 4 AGQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGY--WGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSKTYSFLTPDLW 420 AG+ +R+K + +G+ +G++ +G A+++ AI+ I +AKMN++PVRRG W G+PH++P KV GK GSV V L+PAP+G+G+V V K LL AGI+D +S+T G +RT N A Y AL TY F+T W Sbjct: 70 AGEISRYKVLVIMGNMDGYVSIGTGKAKQLRVAIQKAIRDAKMNIIPVRRGCGSWQCTCGEPHSLPFKVVGKAGSVEVDLLPAPKGTGLVVGSVLKTLLTYAGIKDAWSTTKGETRTTENFVRAGYSALYNTYKFVTLQDW 210
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_PYRAB (30S ribosomal protein S5P OS=Pyrococcus abyssi GN=rps5p PE=3 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 1.172e-28 Identity = 67/141 (47.52%), Postives = 94/141 (66.67%), Query Frame = 1 Query: 4 AGQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGY--WGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSKTYS-FLTPDL 417 +G+R RF+ AVG+ +G++GLG+ REV AIR I AK+N++ ++RG W +PH+VP V GK GSVRV+LIP PRG G+V V KK+L +AGI+DV+S T G +RT N A AV++AL T +TP++ Sbjct: 77 SGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNIIEIKRGCGSWECRCRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKKILRLAGIQDVWSQTLGETRTTVNFAKAVFNALYNTNKVVVTPEM 217 The following BLAST results are available for this feature:
BLAST of CX300722 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 238
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX300722 ID=CX300722; Name=CX300722; organism=Citrus sinensis; type=EST; length=607bpback to top |