CX300722

Overview
NameCX300722
Unique NameCX300722
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_METKA (30S ribosomal protein S5P OS=Methanopyrus kandleri GN=rps5p PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.610e-28
Identity = 64/134 (47.76%), Postives = 90/134 (67.16%), Query Frame = 1
Query:    4 AGQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGY--WGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTT-----GHSRTRGNLAMAVYHAL 384
            +G+R RF+  + VG+ +G +G+G   AREV  AIR  I  AK+N++ VRRG   W    G+PH++P +++GKCGSVR+ L PAPRG+G+VA    +K+L MAGIEDV++ TT     G +RT  N A A + AL
Sbjct:   67 SGRRVRFRVTVVVGNKDGFVGVGQGKAREVGPAIRAAIDRAKLNIIKVRRGCGSWECGCGRPHSIPFEITGKCGSVRITLKPAPRGTGLVAGETAQKVLEMAGIEDVWTKTTGGKGKGETRTTINFAKATFDAL 200          
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_PYRFU (30S ribosomal protein S5P OS=Pyrococcus furiosus GN=rps5p PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.409e-28
Identity = 64/132 (48.48%), Postives = 89/132 (67.42%), Query Frame = 1
Query:    4 AGQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGY--WGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSKT 393
            +G+R RF+   AVG+ +G++GLG+   +EV  AIR  I  AK+N++ ++RG   W     +PH+VP  V GK GSVRVRLIP PRG G+V   V KK+L +AG++DV+S T G +RT  N A AV++AL  T
Sbjct:   77 SGRRVRFRVLAAVGNRDGYVGLGIGHGKEVGIAIRKAINYAKLNIIEIKRGCGSWECRCRRPHSVPFAVEGKEGSVRVRLIPGPRGLGLVIGDVGKKILRLAGVQDVWSQTFGETRTTVNFAKAVFNALYNT 208          
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_PYRKO (30S ribosomal protein S5P OS=Pyrococcus kodakaraensis GN=rps5p PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.452e-28
Identity = 63/132 (47.73%), Postives = 89/132 (67.42%), Query Frame = 1
Query:    4 AGQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGY--WGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSKT 393
            +G+R RF+   AVG+ +G++GLG+   REV  AIR  I  AKMN++ ++RG   W     +PH++P  V GK GSVRV+L+P PRG G+V   V KK+L +AG++DV+S T G +RT  N A AV++AL  T
Sbjct:   76 SGRRIRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKMNIIEIKRGCGSWECRCRRPHSIPFAVEGKEGSVRVKLMPGPRGLGLVIGDVGKKILTLAGVQDVWSQTLGETRTTVNFAKAVFNALYNT 207          
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_METS5 (30S ribosomal protein S5P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps5p PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.452e-28
Identity = 64/142 (45.07%), Postives = 94/142 (66.20%), Query Frame = 1
Query:    4 AGQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGY--WGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSKTYSFLTPDLWA 423
            AG+ +R+K  + +G+ +G++ +GV  ++++  AI+  I +AKM+++PVRRG   W    G+ H++P  VSGK GS  V L PAP+G+G+VA  V K LL  AGI+DV+S + G +RT  N  MA Y AL  TY F+TP  WA
Sbjct:   70 AGELSRYKVLVVMGNYDGYVSIGVGKSKQLRVAIQKAIRDAKMHVIPVRRGCGSWECTCGESHSLPFLVSGKSGSAEVVLRPAPKGTGLVAGGVLKTLLTYAGIKDVWSFSRGETRTTDNFIMAGYRALYNTYKFVTPVDWA 211          
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_THEAC (30S ribosomal protein S5P OS=Thermoplasma acidophilum GN=rps5p PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.594e-28
Identity = 59/132 (44.70%), Postives = 89/132 (67.42%), Query Frame = 1
Query:    4 AGQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGY--WGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSKT 393
            +G+R  +   + VG+G+G++GLG+  ++E A AIR  +INAK+N++ +RRG   W    G+ HT+P  V GK GSVR+ L PAPRG G+    V + +L++AGIED +    GH++T  N A+AVY+AL +T
Sbjct:   62 SGRRMTYSITVVVGNGDGYVGLGIGRSKEAAPAIRKALINAKLNIMEIRRGCGSWECGCGRAHTLPFLVQGKSGSVRITLKPAPRGVGLAVGDVARTILSIAGIEDAWGFAAGHTKTTVNYALAVYNALKET 193          
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_THEVO (30S ribosomal protein S5P OS=Thermoplasma volcanium GN=rps5p PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.692e-27
Identity = 61/132 (46.21%), Postives = 87/132 (65.91%), Query Frame = 1
Query:    4 AGQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGY--WGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSKT 393
            +G+R  +   + VG+ +G+IGLG+  ++E A AIR  +INAK+N++ +RRG   W    G+ HT+P  V GK GSVR+ L PAPRG G+    V K +L MAGIED +    GH++T  N A+AVY+AL +T
Sbjct:   62 SGRRMTYSITVVVGNEDGYIGLGIGRSKEAAPAIRKALINAKLNIMEIRRGCGSWECGCGRAHTLPFLVEGKSGSVRITLKPAPRGVGLAVGNVAKIILRMAGIEDAWGFAAGHTKTTVNYALAVYNALKET 193          
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_METS3 (30S ribosomal protein S5P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps5p PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.210e-27
Identity = 66/134 (49.25%), Postives = 89/134 (66.42%), Query Frame = 1
Query:    4 AGQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGY--WGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSKTYS 399
            +G++  F+  +AVG+ NG++GLG   A+EV  AIR  + NAK NL+ VRRG   WG   G+ HTVP KV GK  SV V L+PAP G G+V   V K +LN+AGI+DV+S + G ++T  N A A++ AL KT S
Sbjct:   65 SGRKVNFRVIVAVGNKNGYVGLGQGKAKEVGPAIRKAVDNAKYNLIKVRRGCGDWGCVCGKEHTVPFKVQGKASSVSVSLMPAPAGVGLVVGDVGKTILNLAGIKDVWSQSFGQTQTTVNFANAIFDAL-KTLS 197          
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_METTH (30S ribosomal protein S5P OS=Methanobacterium thermoautotrophicum GN=rps5p PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.886e-27
Identity = 63/131 (48.09%), Postives = 87/131 (66.41%), Query Frame = 1
Query:    4 AGQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGY--WGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSK 390
            +G++  F+  +AVG+ +G++GLG   AREV  AIR  + +AK N++ VRRG   WG   G+ HTVP KVSGK GSVRV LIPAP G G+    V K ++ +AGI+DV+S T G ++T  N A A + AL +
Sbjct:   67 SGRKVNFRVIVAVGNKDGYVGLGQGKAREVGPAIRKAVDDAKFNIIKVRRGCGDWGCVCGREHTVPFKVSGKSGSVRVTLIPAPGGVGLAIGDVGKTIMRLAGIDDVWSHTRGQTQTTVNFARATFDALKQ 197          
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_METJA (30S ribosomal protein S5P OS=Methanocaldococcus jannaschii GN=rps5p PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.886e-27
Identity = 59/129 (45.74%), Postives = 85/129 (65.89%), Query Frame = 1
Query:    4 AGQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGY--WGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHAL 384
            +G+R RF+  + VG+ NG++G+G   A+EV  AIR  I  AK N++ V+RG   W    G PH++P K  GKCGS  + ++PAP+G G+VA  V K +L +AGI+DV++ T G +RT  N AMA + AL
Sbjct:   65 SGRRARFRATVVVGNRNGYVGVGKGKAKEVGPAIRKAIAQAKKNIIRVKRGCGSWECGCGTPHSIPYKGYGKCGSTAIEILPAPKGVGLVAGDVAKAVLGLAGIKDVWTKTFGETRTTYNFAMATFEAL 193          
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_METTP (30S ribosomal protein S5P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps5p PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.769e-27
Identity = 64/132 (48.48%), Postives = 88/132 (66.67%), Query Frame = 1
Query:    4 AGQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGY--WGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSKT 393
            +G+R +F+  + VG+ +G+IG+G     +V  AI+ GI NAK+N+V + RG   W    GQ HTVP KVSG  GSVR+ L+PAPRG G+ A  V KK++ MAGI+DV++ T G +RT  N A A Y+AL  T
Sbjct:   67 SGRRVKFRTTVIVGNRDGYIGIGHGKDVQVGGAIKKGIENAKLNVVRINRGCGSWECGCGQAHTVPYKVSGSSGSVRIYLMPAPRGLGLAAGDVAKKVMEMAGIKDVWTRTEGSTRTTLNFAKATYNALLNT 198          
The following BLAST results are available for this feature:
BLAST of CX300722 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
RS5_METKA2.610e-2847.7630S ribosomal protein S5P OS=Methanopyrus kandleri... [more]
RS5_PYRFU3.409e-2848.4830S ribosomal protein S5P OS=Pyrococcus furiosus G... [more]
RS5_PYRKO4.452e-2847.7330S ribosomal protein S5P OS=Pyrococcus kodakaraen... [more]
RS5_METS54.452e-2845.0730S ribosomal protein S5P OS=Metallosphaera sedula... [more]
RS5_THEAC7.594e-2844.7030S ribosomal protein S5P OS=Thermoplasma acidophi... [more]
RS5_THEVO1.692e-2746.2130S ribosomal protein S5P OS=Thermoplasma volcaniu... [more]
RS5_METS32.210e-2749.2530S ribosomal protein S5P OS=Methanobrevibacter sm... [more]
RS5_METTH2.886e-2748.0930S ribosomal protein S5P OS=Methanobacterium ther... [more]
RS5_METJA2.886e-2745.7430S ribosomal protein S5P OS=Methanocaldococcus ja... [more]
RS5_METTP3.769e-2748.4830S ribosomal protein S5P OS=Methanosaeta thermoph... [more]

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Properties
Property NameValue
Genbank descriptionC08001E08SK PhyRootSw1 Citrus sinensis cDNA clone C08001E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300722 ID=CX300722; Name=CX300722; organism=Citrus sinensis; type=EST; length=607bp
ACCGCCGGTCAACGCACCCGCTTCAAGTGCTACATCGCTGTCGGTGATGG
CAACGGCCACATTGGTTTGGGTGTCAAGTGCGCTCGTGAAGTTGCCACTG
CTATCCGTGGAGGTATCATCAACGCCAAGATGAACCTTGTTCCAGTTCGT
CGTGGTTACTGGGGTCTTAACGCCGGTCAACCACACACTGTCCCTTGCAA
GGTCTCTGGAAAGTGCGGTTCCGTCCGTGTCAGATTGATCCCTGCCCCTC
GTGGTTCTGGTATCGTCGCTTCCGTTGTCCCAAAGAAGTTATTAAACATG
GCTGGTATTGAGGACGTTTACTCTTCCACCACTGGTCACTCCCGTACCAG
AGGTAACTTGGCAATGGCTGTCTACCACGCCTTATCCAAGACTTACAGCT
TCTTAACCCCTGACTTATGGGCTCCTACCCACTTCCAACCAACTCCTCAA
CAGGAATACTCTGATTTACTTGCCAAGAAGGCCAACAAATATTAAATTAC
TTTCATAGGATTGTGAGGAGAGGATAAGCGTGACTATTCTACGGTGCGAT
GTGCCGACCTCATATGATGTAATTTAATACAACAATATTCAAAAAAAAAA
AAAAAAA
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