CX300722

Overview
NameCX300722
Unique NameCX300722
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_METB6 (30S ribosomal protein S5P OS=Methanoregula boonei (strain 6A8) GN=rps5p PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.632e-23
Identity = 57/132 (43.18%), Postives = 81/132 (61.36%), Query Frame = 1
Query:    4 AGQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGY--WGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSKT 393
            +G+R +F+  + VG+ NG+IG G     +V  AI+  I  AKMNLV VRRG   W       H++P +V G  GSVRV L PAP+G G+V   + KK+L +AGI+D ++   G +RT  N A A ++AL +T
Sbjct:   65 SGRRVQFRAVVIVGNRNGYIGFGQGKDVQVGDAIKKAITKAKMNLVKVRRGCGSWECGCAVLHSIPMQVEGTAGSVRVTLKPAPQGIGLVTGDISKKVLELAGIKDAWTFARGQTRTTINFAKATFNALKET 196          
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_METBF (30S ribosomal protein S5P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps5p PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.356e-23
Identity = 58/131 (44.27%), Postives = 82/131 (62.60%), Query Frame = 1
Query:    4 AGQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGY--WGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSK 390
            +G+R +F+  + VG+ NG++GLG     +V  AIR  I  AK+++  + RG   W    G PHTVP +V+GK GSV V LIPAPRG GI A     K+L  AGI+DV++ T G +R+  N A A + AL++
Sbjct:   64 SGRRVKFRATVIVGNRNGYVGLGQAKDVQVGPAIRKAIDAAKLDITYIHRGCGSWECACGLPHTVPYEVTGKAGSVSVTLIPAPRGLGIAAGNTATKVLEKAGIKDVWTKTFGTTRSTLNFAKATFDALNQ 194          
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_HALSA (30S ribosomal protein S5P OS=Halobacterium salinarium GN=rps5p PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 9.607e-23
Identity = 54/138 (39.13%), Postives = 85/138 (61.59%), Query Frame = 1
Query:    4 AGQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGY--WGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSKTYSFLTP 411
            +G+R +F+C +A+G+ +G++G       +V  AI+  I  AK+N++ V RG   W    G+PHTV  K +GK GSV V L+PAPRG G+      + +L +AGI+DV++ ++G +RT  N A A ++AL +T     P
Sbjct:   64 SGRRVKFRCVVAIGNRDGYVGYAEGRDDQVGGAIQKAIEVAKLNIIDVSRGCGSWECGCGRPHTVALKSTGKAGSVDVELMPAPRGLGLAGGETVQHVLELAGIDDVWTRSSGKTRTTVNFAKATFNALRETSEARVP 201          
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_NANEQ (30S ribosomal protein S5P OS=Nanoarchaeum equitans GN=rps5p PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.651e-22
Identity = 55/130 (42.31%), Postives = 81/130 (62.31%), Query Frame = 1
Query:    7 GQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGY--WGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSK 390
            G +TR++    VGD +GH+G+G+  + ++  A    I  AK+N++ V RG   W    G PH++P +V GK GSVRV L PAP+G GIVA    KK+  +AGI+DV+  + G ++T+ N   AV+ AL K
Sbjct:   78 GNKTRYEVIAIVGDKDGHVGVGLGRSSDLLIAREKAINRAKLNIIKVARGCGSWECACGAPHSIPYQVEGKSGSVRVILKPAPKGVGIVADDEIKKIFRLAGIKDVWVRSFGKTKTKMNHVFAVFDALKK 207          
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_CENSY (30S ribosomal protein S5P OS=Cenarchaeum symbiosum GN=rps5p PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.036e-21
Identity = 52/133 (39.10%), Postives = 81/133 (60.90%), Query Frame = 1
Query:    7 GQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGY--WGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSKTYS 399
            GQ TRFK  +A G+ NG++G+G   A+++  AI      A +N+ P++ G   W     Q H+VP KV GK GSV + ++PAPRG G+VA    ++LL +AG++D Y++  G + T  + + AV   L +T+S
Sbjct:   85 GQSTRFKAIVAAGNENGYLGIGQGKAKQMRIAIEKANNQALLNVGPIKLGCGSWECRCDQKHSVPFKVRGKGGSVVIEILPAPRGLGLVAGGKIRRLLELAGLKDAYTTAKGSTPTTNSTSKAVLECLRQTFS 217          
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_HALWD (30S ribosomal protein S5P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps5p PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.534e-20
Identity = 52/138 (37.68%), Postives = 83/138 (60.14%), Query Frame = 1
Query:    4 AGQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGY--WGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSKTYSFLTP 411
            +G+R +F+C +A+G+ NG +G       +V +AI+  I  AK+NL+ V RG   W  +AG  +++     GK GSV V ++PAP+G G+ A+     +L +AG+ED ++ + G++RT  NLA A Y+AL       TP
Sbjct:   68 SGRRVKFRCVVAIGNRNGFLGYAEGRDDQVGSAIQKAIDVAKLNLISVDRGSGSWEDSAGGVNSLTRNAEGKAGSVTVEVMPAPQGLGLAAAETVSNILELAGVEDAWTRSNGNTRTTVNLAKATYNALRNASQSRTP 205          
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_NATPD (30S ribosomal protein S5P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps5p PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.778e-19
Identity = 50/139 (35.97%), Postives = 82/139 (58.99%), Query Frame = 1
Query:    4 AGQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNL--VPVRRGYWGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSKTYSFLTPD 414
            +G+R +F+C + +G+ +G++G       +V  AI+  I  AK+N+  VP+  G W    G  +++  + +GK GSV V L PAPRG G+ A+   + +L +AG+ED ++   G++RT  NLA A Y+AL       TP+
Sbjct:   62 SGRRVKFRCVVVIGNRDGYVGYAQGRDDQVGGAIQKAIDVAKLNIIDVPLGSGSWEDRPGGRNSLMRRTTGKAGSVEVELKPAPRGLGLAAAPTVRHVLELAGVEDAWTKCHGNTRTTLNLAKATYNALRNASESRTPE 200          
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_LACSS (30S ribosomal protein S5 OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=rpsE PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.322e-15
Identity = 51/128 (39.84%), Postives = 72/128 (56.25%), Query Frame = 1
Query:    7 GQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGYWGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSK 390
            G+R RF   + VGD NGH+G G   A+EV  AIR  + +AK NL+ V +           T+P +V G+ G+ RV L PA  GSGI A    + ++ +AGI+DV S T G S+T  N+  A    L++
Sbjct:   28 GRRLRFAAIVIVGDKNGHVGFGTGKAQEVPEAIRKAVEDAKKNLINVPK--------VGTTLPHEVIGRFGAGRVLLKPAVEGSGIAAGGAVRAVMELAGIDDVTSKTLG-SKTAINVIRATIDGLTR 146          
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_PELTS (30S ribosomal protein S5 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.642e-14
Identity = 53/148 (35.81%), Postives = 79/148 (53.38%), Query Frame = 1
Query:    7 GQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGYWGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSKTYSFLTPDLWAPTHFQPTPQ 450
            G+R  F   + VGDGNGH+G G+  A EV  AIR GI +AK N++ V        AG   T+P +V G+ G+ +V L PA  G+G++A    + +L +AG+ D+ + + G S    N+  A   AL    S  TP+  A    +P  +
Sbjct:   28 GRRFSFSALMVVGDGNGHVGAGLGKAGEVPEAIRKGIEDAKKNMIKVPL------AGT--TIPHEVIGEFGAGKVLLKPAAPGTGVIAGGPVRAILELAGVRDILTKSLG-SNNANNMVRATIEALK---SLKTPEEVARLRGKPVEE 163          
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_CLOAB (30S ribosomal protein S5 OS=Clostridium acetobutylicum GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.642e-14
Identity = 47/128 (36.72%), Postives = 73/128 (57.03%), Query Frame = 1
Query:    7 GQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGYWGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSK 390
            G+  RF   + VGD NGH+G+G   + E+  AIR GI +AK NLV V        A    TVP ++ G+ G+ RV ++PA  G+G++A    + +L +AG+ DV + + G +  R N+  A  + LS+
Sbjct:   27 GRNFRFTALVVVGDENGHVGVGTGKSAEIPEAIRKGIEDAKKNLVEV--------AIVGTTVPHEIYGEFGTGRVLIMPASEGTGVIAGGPVRAVLELAGLNDVRAKSLGSNNPR-NMVNATINGLSR 145          
The following BLAST results are available for this feature:
BLAST of CX300722 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
RS5_METB65.632e-2343.1830S ribosomal protein S5P OS=Methanoregula boonei ... [more]
RS5_METBF7.356e-2344.2730S ribosomal protein S5P OS=Methanosarcina barker... [more]
RS5_HALSA9.607e-2339.1330S ribosomal protein S5P OS=Halobacterium salinar... [more]
RS5_NANEQ3.651e-2242.3130S ribosomal protein S5P OS=Nanoarchaeum equitans... [more]
RS5_CENSY4.036e-2139.1030S ribosomal protein S5P OS=Cenarchaeum symbiosum... [more]
RS5_HALWD1.534e-2037.6830S ribosomal protein S5P OS=Haloquadratum walsbyi... [more]
RS5_NATPD3.778e-1935.9730S ribosomal protein S5P OS=Natronomonas pharaoni... [more]
RS5_LACSS4.322e-1539.8430S ribosomal protein S5 OS=Lactobacillus sakei su... [more]
RS5_PELTS1.642e-1435.8130S ribosomal protein S5 OS=Pelotomaculum thermopr... [more]
RS5_CLOAB1.642e-1436.7230S ribosomal protein S5 OS=Clostridium acetobutyl... [more]

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Properties
Property NameValue
Genbank descriptionC08001E08SK PhyRootSw1 Citrus sinensis cDNA clone C08001E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300722 ID=CX300722; Name=CX300722; organism=Citrus sinensis; type=EST; length=607bp
ACCGCCGGTCAACGCACCCGCTTCAAGTGCTACATCGCTGTCGGTGATGG
CAACGGCCACATTGGTTTGGGTGTCAAGTGCGCTCGTGAAGTTGCCACTG
CTATCCGTGGAGGTATCATCAACGCCAAGATGAACCTTGTTCCAGTTCGT
CGTGGTTACTGGGGTCTTAACGCCGGTCAACCACACACTGTCCCTTGCAA
GGTCTCTGGAAAGTGCGGTTCCGTCCGTGTCAGATTGATCCCTGCCCCTC
GTGGTTCTGGTATCGTCGCTTCCGTTGTCCCAAAGAAGTTATTAAACATG
GCTGGTATTGAGGACGTTTACTCTTCCACCACTGGTCACTCCCGTACCAG
AGGTAACTTGGCAATGGCTGTCTACCACGCCTTATCCAAGACTTACAGCT
TCTTAACCCCTGACTTATGGGCTCCTACCCACTTCCAACCAACTCCTCAA
CAGGAATACTCTGATTTACTTGCCAAGAAGGCCAACAAATATTAAATTAC
TTTCATAGGATTGTGAGGAGAGGATAAGCGTGACTATTCTACGGTGCGAT
GTGCCGACCTCATATGATGTAATTTAATACAACAATATTCAAAAAAAAAA
AAAAAAA
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