CX300722
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_METB6 (30S ribosomal protein S5P OS=Methanoregula boonei (strain 6A8) GN=rps5p PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 5.632e-23 Identity = 57/132 (43.18%), Postives = 81/132 (61.36%), Query Frame = 1 Query: 4 AGQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGY--WGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSKT 393 +G+R +F+ + VG+ NG+IG G +V AI+ I AKMNLV VRRG W H++P +V G GSVRV L PAP+G G+V + KK+L +AGI+D ++ G +RT N A A ++AL +T Sbjct: 65 SGRRVQFRAVVIVGNRNGYIGFGQGKDVQVGDAIKKAITKAKMNLVKVRRGCGSWECGCAVLHSIPMQVEGTAGSVRVTLKPAPQGIGLVTGDISKKVLELAGIKDAWTFARGQTRTTINFAKATFNALKET 196
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_METBF (30S ribosomal protein S5P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps5p PE=3 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 7.356e-23 Identity = 58/131 (44.27%), Postives = 82/131 (62.60%), Query Frame = 1 Query: 4 AGQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGY--WGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSK 390 +G+R +F+ + VG+ NG++GLG +V AIR I AK+++ + RG W G PHTVP +V+GK GSV V LIPAPRG GI A K+L AGI+DV++ T G +R+ N A A + AL++ Sbjct: 64 SGRRVKFRATVIVGNRNGYVGLGQAKDVQVGPAIRKAIDAAKLDITYIHRGCGSWECACGLPHTVPYEVTGKAGSVSVTLIPAPRGLGIAAGNTATKVLEKAGIKDVWTKTFGTTRSTLNFAKATFDALNQ 194
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_HALSA (30S ribosomal protein S5P OS=Halobacterium salinarium GN=rps5p PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 9.607e-23 Identity = 54/138 (39.13%), Postives = 85/138 (61.59%), Query Frame = 1 Query: 4 AGQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGY--WGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSKTYSFLTP 411 +G+R +F+C +A+G+ +G++G +V AI+ I AK+N++ V RG W G+PHTV K +GK GSV V L+PAPRG G+ + +L +AGI+DV++ ++G +RT N A A ++AL +T P Sbjct: 64 SGRRVKFRCVVAIGNRDGYVGYAEGRDDQVGGAIQKAIEVAKLNIIDVSRGCGSWECGCGRPHTVALKSTGKAGSVDVELMPAPRGLGLAGGETVQHVLELAGIDDVWTRSSGKTRTTVNFAKATFNALRETSEARVP 201
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_NANEQ (30S ribosomal protein S5P OS=Nanoarchaeum equitans GN=rps5p PE=3 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 3.651e-22 Identity = 55/130 (42.31%), Postives = 81/130 (62.31%), Query Frame = 1 Query: 7 GQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGY--WGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSK 390 G +TR++ VGD +GH+G+G+ + ++ A I AK+N++ V RG W G PH++P +V GK GSVRV L PAP+G GIVA KK+ +AGI+DV+ + G ++T+ N AV+ AL K Sbjct: 78 GNKTRYEVIAIVGDKDGHVGVGLGRSSDLLIAREKAINRAKLNIIKVARGCGSWECACGAPHSIPYQVEGKSGSVRVILKPAPKGVGIVADDEIKKIFRLAGIKDVWVRSFGKTKTKMNHVFAVFDALKK 207
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_CENSY (30S ribosomal protein S5P OS=Cenarchaeum symbiosum GN=rps5p PE=3 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 4.036e-21 Identity = 52/133 (39.10%), Postives = 81/133 (60.90%), Query Frame = 1 Query: 7 GQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGY--WGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSKTYS 399 GQ TRFK +A G+ NG++G+G A+++ AI A +N+ P++ G W Q H+VP KV GK GSV + ++PAPRG G+VA ++LL +AG++D Y++ G + T + + AV L +T+S Sbjct: 85 GQSTRFKAIVAAGNENGYLGIGQGKAKQMRIAIEKANNQALLNVGPIKLGCGSWECRCDQKHSVPFKVRGKGGSVVIEILPAPRGLGLVAGGKIRRLLELAGLKDAYTTAKGSTPTTNSTSKAVLECLRQTFS 217
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_HALWD (30S ribosomal protein S5P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps5p PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.534e-20 Identity = 52/138 (37.68%), Postives = 83/138 (60.14%), Query Frame = 1 Query: 4 AGQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGY--WGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSKTYSFLTP 411 +G+R +F+C +A+G+ NG +G +V +AI+ I AK+NL+ V RG W +AG +++ GK GSV V ++PAP+G G+ A+ +L +AG+ED ++ + G++RT NLA A Y+AL TP Sbjct: 68 SGRRVKFRCVVAIGNRNGFLGYAEGRDDQVGSAIQKAIDVAKLNLISVDRGSGSWEDSAGGVNSLTRNAEGKAGSVTVEVMPAPQGLGLAAAETVSNILELAGVEDAWTRSNGNTRTTVNLAKATYNALRNASQSRTP 205
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_NATPD (30S ribosomal protein S5P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps5p PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 3.778e-19 Identity = 50/139 (35.97%), Postives = 82/139 (58.99%), Query Frame = 1 Query: 4 AGQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNL--VPVRRGYWGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSKTYSFLTPD 414 +G+R +F+C + +G+ +G++G +V AI+ I AK+N+ VP+ G W G +++ + +GK GSV V L PAPRG G+ A+ + +L +AG+ED ++ G++RT NLA A Y+AL TP+ Sbjct: 62 SGRRVKFRCVVVIGNRDGYVGYAQGRDDQVGGAIQKAIDVAKLNIIDVPLGSGSWEDRPGGRNSLMRRTTGKAGSVEVELKPAPRGLGLAAAPTVRHVLELAGVEDAWTKCHGNTRTTLNLAKATYNALRNASESRTPE 200
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_LACSS (30S ribosomal protein S5 OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=rpsE PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 4.322e-15 Identity = 51/128 (39.84%), Postives = 72/128 (56.25%), Query Frame = 1 Query: 7 GQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGYWGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSK 390 G+R RF + VGD NGH+G G A+EV AIR + +AK NL+ V + T+P +V G+ G+ RV L PA GSGI A + ++ +AGI+DV S T G S+T N+ A L++ Sbjct: 28 GRRLRFAAIVIVGDKNGHVGFGTGKAQEVPEAIRKAVEDAKKNLINVPK--------VGTTLPHEVIGRFGAGRVLLKPAVEGSGIAAGGAVRAVMELAGIDDVTSKTLG-SKTAINVIRATIDGLTR 146
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_PELTS (30S ribosomal protein S5 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=rpsE PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.642e-14 Identity = 53/148 (35.81%), Postives = 79/148 (53.38%), Query Frame = 1 Query: 7 GQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGYWGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSKTYSFLTPDLWAPTHFQPTPQ 450 G+R F + VGDGNGH+G G+ A EV AIR GI +AK N++ V AG T+P +V G+ G+ +V L PA G+G++A + +L +AG+ D+ + + G S N+ A AL S TP+ A +P + Sbjct: 28 GRRFSFSALMVVGDGNGHVGAGLGKAGEVPEAIRKGIEDAKKNMIKVPL------AGT--TIPHEVIGEFGAGKVLLKPAAPGTGVIAGGPVRAILELAGVRDILTKSLG-SNNANNMVRATIEALK---SLKTPEEVARLRGKPVEE 163
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_CLOAB (30S ribosomal protein S5 OS=Clostridium acetobutylicum GN=rpsE PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.642e-14 Identity = 47/128 (36.72%), Postives = 73/128 (57.03%), Query Frame = 1 Query: 7 GQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGYWGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSK 390 G+ RF + VGD NGH+G+G + E+ AIR GI +AK NLV V A TVP ++ G+ G+ RV ++PA G+G++A + +L +AG+ DV + + G + R N+ A + LS+ Sbjct: 27 GRNFRFTALVVVGDENGHVGVGTGKSAEIPEAIRKGIEDAKKNLVEV--------AIVGTTVPHEIYGEFGTGRVLIMPASEGTGVIAGGPVRAVLELAGLNDVRAKSLGSNNPR-NMVNATINGLSR 145 The following BLAST results are available for this feature:
BLAST of CX300722 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 238
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX300722 ID=CX300722; Name=CX300722; organism=Citrus sinensis; type=EST; length=607bpback to top |