CX300722

Overview
NameCX300722
Unique NameCX300722
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_CHLT3 (30S ribosomal protein S5 OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=rpsE PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.659e-14
Identity = 46/130 (35.38%), Postives = 71/130 (54.62%), Query Frame = 1
Query:    7 GQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNL--VPVRRGYWGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSK 390
            G+R  F   + VGDG GH+G G+  A EV  AI  GI +AK N+  VP+ +G          T+P ++  K G+ +V + PA  G+G++A    + +L MAG++DV + + G S    N+  A  H L +
Sbjct:   33 GKRFGFNAIVVVGDGEGHVGYGLGKANEVQDAIAKGIEDAKKNVIEVPIIKG----------TIPHQIFAKFGAAKVLMKPATPGTGLIAGGAVRAVLEMAGVKDVLTKSLGSSNPH-NVVKATVHGLQE 151          
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_ROSS1 (30S ribosomal protein S5 OS=Roseiflexus sp. (strain RS-1) GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.779e-14
Identity = 49/127 (38.58%), Postives = 70/127 (55.12%), Query Frame = 1
Query:    7 GQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGYWGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALS 387
            G+R  F   + VGDG GH+G+G+  A EV  AIR G+  AK NL+ V             T+P +V  +  + +VRL+PA  G+G++A    + +L MAGI+DV S   G S    N+  A + ALS
Sbjct:   30 GRRFSFSTVVVVGDGKGHVGIGMGKAAEVPEAIRKGVEAAKKNLIRVPL--------SGTTIPHEVQMEFAASKVRLLPAAPGTGVIAGRGVRPVLEMAGIKDVLSKRYG-SNNPINVVKATFKALS 147          
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_CLONN (30S ribosomal protein S5 OS=Clostridium novyi (strain NT) GN=rpsE PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.241e-14
Identity = 46/128 (35.94%), Postives = 73/128 (57.03%), Query Frame = 1
Query:    7 GQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGYWGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSK 390
            G+  RF   + VGD NGH+G+G+  A E+  AIR GI +AK +LV V        A    TVP  + G+ G  RV ++PA  G+G++A    + +L +AG++DV + + G +  + N+  A  + LS+
Sbjct:   27 GRNFRFSALVVVGDENGHVGVGMGKAVEIPEAIRKGIEDAKKHLVEV--------AMVDTTVPHAIQGEFGRGRVLIMPATEGTGVIAGGPVRAVLELAGLKDVRAKSLGSNNPK-NMVGATINGLSR 145          
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_GEOSL (30S ribosomal protein S5 OS=Geobacter sulfurreducens GN=rpsE PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.065e-13
Identity = 48/133 (36.09%), Postives = 70/133 (52.63%), Query Frame = 1
Query:    7 GQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNL--VPVRRGYWGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSKTYS 399
            G+R  F   + VGDGNG +G G+  A EV  AIR G+  AK NL  VP+  G         HT+P +V G  G+ RV + PA  G+G++A    + +   AG+ +V S   G S    N+  A ++ L++  S
Sbjct:   28 GRRFSFSALVVVGDGNGCVGYGLGKANEVPEAIRKGVEQAKKNLIKVPIVEG---------HTIPYEVLGHFGAGRVLIKPASAGTGVIAGGAARAVFEAAGLHNVLSKCLG-SNNPHNVVKAAFNGLAQLRS 150          
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_CLOPS (30S ribosomal protein S5 OS=Clostridium perfringens (strain SM101 / Type A) GN=rpsE PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.065e-13
Identity = 45/127 (35.43%), Postives = 72/127 (56.69%), Query Frame = 1
Query:    7 GQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGYWGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALS 387
            G+  RF   + VGD NGH+G+G   + E+  AIR GI +AK NLV V        +    TVP ++ GK G+  V ++PA  G+G++A    + +L +AG++DV + + G +  R N+  A  + L+
Sbjct:   27 GRNFRFSALVVVGDENGHVGVGTGKSIEIPEAIRKGIEDAKKNLVEV--------SIVGTTVPHEIHGKFGTGDVLIMPATEGTGVIAGGPARSVLELAGLKDVRAKSLGSNNPR-NMVKATINGLA 144          
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_CLOPE (30S ribosomal protein S5 OS=Clostridium perfringens GN=rpsE PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.065e-13
Identity = 45/127 (35.43%), Postives = 72/127 (56.69%), Query Frame = 1
Query:    7 GQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGYWGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALS 387
            G+  RF   + VGD NGH+G+G   + E+  AIR GI +AK NLV V        +    TVP ++ GK G+  V ++PA  G+G++A    + +L +AG++DV + + G +  R N+  A  + L+
Sbjct:   27 GRNFRFSALVVVGDENGHVGVGTGKSIEIPEAIRKGIEDAKKNLVEV--------SIVGTTVPHEIHGKFGTGDVLIMPATEGTGVIAGGPARSVLELAGLKDVRAKSLGSNNPR-NMVKATINGLA 144          
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_CLOP1 (30S ribosomal protein S5 OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=rpsE PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.065e-13
Identity = 45/127 (35.43%), Postives = 72/127 (56.69%), Query Frame = 1
Query:    7 GQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGYWGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALS 387
            G+  RF   + VGD NGH+G+G   + E+  AIR GI +AK NLV V        +    TVP ++ GK G+  V ++PA  G+G++A    + +L +AG++DV + + G +  R N+  A  + L+
Sbjct:   27 GRNFRFSALVVVGDENGHVGVGTGKSIEIPEAIRKGIEDAKKNLVEV--------SIVGTTVPHEIHGKFGTGDVLIMPATEGTGVIAGGPARSVLELAGLKDVRAKSLGSNNPR-NMVKATINGLA 144          
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_CARHZ (30S ribosomal protein S5 OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=rpsE PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.065e-13
Identity = 47/126 (37.30%), Postives = 71/126 (56.35%), Query Frame = 1
Query:    7 GQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGYWGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHAL 384
            G+R  F   + VGD  GH+G+G+  A EV  AIR GI +AK NL+ V      +N     T+P ++ G+ G+ +V L PA  G+G++A    + +L MAG+ D+ + + G S    N+A A   AL
Sbjct:   28 GRRFSFSALVVVGDQKGHVGVGLGKAPEVPDAIRKGIEDAKKNLIKVPI----VNT----TIPHEIIGEAGAGKVLLKPAAPGTGVIAGSAVRAILEMAGVRDILTKSLG-SNNPHNMAHATIEAL 144          
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_BACHK (30S ribosomal protein S5 OS=Bacillus thuringiensis subsp. konkukian GN=rpsE PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.065e-13
Identity = 47/128 (36.72%), Postives = 70/128 (54.69%), Query Frame = 1
Query:    7 GQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGYWGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSK 390
            G+R RF   + VGD NGH+G G   A+EV  AIR  I +AK NL+ V             T+P  ++G  G+  V L PA  G+G++A    + +L +AG++D+ S + G S T  N+  A  + LS+
Sbjct:   28 GRRFRFAALVVVGDKNGHVGFGTGKAQEVPDAIRKAIEDAKKNLIAVPL--------VGTTIPHTINGHFGAGEVFLKPAAEGTGVIAGGPVRAVLELAGVQDILSKSLG-SNTPINMIRATVNGLSE 146          
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_BACCZ (30S ribosomal protein S5 OS=Bacillus cereus (strain ZK / E33L) GN=rpsE PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.065e-13
Identity = 47/128 (36.72%), Postives = 70/128 (54.69%), Query Frame = 1
Query:    7 GQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGYWGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSK 390
            G+R RF   + VGD NGH+G G   A+EV  AIR  I +AK NL+ V             T+P  ++G  G+  V L PA  G+G++A    + +L +AG++D+ S + G S T  N+  A  + LS+
Sbjct:   28 GRRFRFAALVVVGDKNGHVGFGTGKAQEVPDAIRKAIEDAKKNLIAVPL--------VGTTIPHTINGHFGAGEVFLKPAAEGTGVIAGGPVRAVLELAGVQDILSKSLG-SNTPINMIRATVNGLSE 146          
The following BLAST results are available for this feature:
BLAST of CX300722 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
RS5_CHLT33.659e-1435.3830S ribosomal protein S5 OS=Chloroherpeton thalass... [more]
RS5_ROSS14.779e-1438.5830S ribosomal protein S5 OS=Roseiflexus sp. (strai... [more]
RS5_CLONN6.241e-1435.9430S ribosomal protein S5 OS=Clostridium novyi (str... [more]
RS5_GEOSL1.065e-1336.0930S ribosomal protein S5 OS=Geobacter sulfurreduce... [more]
RS5_CLOPS1.065e-1335.4330S ribosomal protein S5 OS=Clostridium perfringen... [more]
RS5_CLOPE1.065e-1335.4330S ribosomal protein S5 OS=Clostridium perfringen... [more]
RS5_CLOP11.065e-1335.4330S ribosomal protein S5 OS=Clostridium perfringen... [more]
RS5_CARHZ1.065e-1337.3030S ribosomal protein S5 OS=Carboxydothermus hydro... [more]
RS5_BACHK1.065e-1336.7230S ribosomal protein S5 OS=Bacillus thuringiensis... [more]
RS5_BACCZ1.065e-1336.7230S ribosomal protein S5 OS=Bacillus cereus (strai... [more]

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Properties
Property NameValue
Genbank descriptionC08001E08SK PhyRootSw1 Citrus sinensis cDNA clone C08001E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300722 ID=CX300722; Name=CX300722; organism=Citrus sinensis; type=EST; length=607bp
ACCGCCGGTCAACGCACCCGCTTCAAGTGCTACATCGCTGTCGGTGATGG
CAACGGCCACATTGGTTTGGGTGTCAAGTGCGCTCGTGAAGTTGCCACTG
CTATCCGTGGAGGTATCATCAACGCCAAGATGAACCTTGTTCCAGTTCGT
CGTGGTTACTGGGGTCTTAACGCCGGTCAACCACACACTGTCCCTTGCAA
GGTCTCTGGAAAGTGCGGTTCCGTCCGTGTCAGATTGATCCCTGCCCCTC
GTGGTTCTGGTATCGTCGCTTCCGTTGTCCCAAAGAAGTTATTAAACATG
GCTGGTATTGAGGACGTTTACTCTTCCACCACTGGTCACTCCCGTACCAG
AGGTAACTTGGCAATGGCTGTCTACCACGCCTTATCCAAGACTTACAGCT
TCTTAACCCCTGACTTATGGGCTCCTACCCACTTCCAACCAACTCCTCAA
CAGGAATACTCTGATTTACTTGCCAAGAAGGCCAACAAATATTAAATTAC
TTTCATAGGATTGTGAGGAGAGGATAAGCGTGACTATTCTACGGTGCGAT
GTGCCGACCTCATATGATGTAATTTAATACAACAATATTCAAAAAAAAAA
AAAAAAA
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