CX300722
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_CHLT3 (30S ribosomal protein S5 OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=rpsE PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 3.659e-14 Identity = 46/130 (35.38%), Postives = 71/130 (54.62%), Query Frame = 1 Query: 7 GQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNL--VPVRRGYWGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSK 390 G+R F + VGDG GH+G G+ A EV AI GI +AK N+ VP+ +G T+P ++ K G+ +V + PA G+G++A + +L MAG++DV + + G S N+ A H L + Sbjct: 33 GKRFGFNAIVVVGDGEGHVGYGLGKANEVQDAIAKGIEDAKKNVIEVPIIKG----------TIPHQIFAKFGAAKVLMKPATPGTGLIAGGAVRAVLEMAGVKDVLTKSLGSSNPH-NVVKATVHGLQE 151
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_ROSS1 (30S ribosomal protein S5 OS=Roseiflexus sp. (strain RS-1) GN=rpsE PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 4.779e-14 Identity = 49/127 (38.58%), Postives = 70/127 (55.12%), Query Frame = 1 Query: 7 GQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGYWGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALS 387 G+R F + VGDG GH+G+G+ A EV AIR G+ AK NL+ V T+P +V + + +VRL+PA G+G++A + +L MAGI+DV S G S N+ A + ALS Sbjct: 30 GRRFSFSTVVVVGDGKGHVGIGMGKAAEVPEAIRKGVEAAKKNLIRVPL--------SGTTIPHEVQMEFAASKVRLLPAAPGTGVIAGRGVRPVLEMAGIKDVLSKRYG-SNNPINVVKATFKALS 147
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_CLONN (30S ribosomal protein S5 OS=Clostridium novyi (strain NT) GN=rpsE PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 6.241e-14 Identity = 46/128 (35.94%), Postives = 73/128 (57.03%), Query Frame = 1 Query: 7 GQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGYWGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSK 390 G+ RF + VGD NGH+G+G+ A E+ AIR GI +AK +LV V A TVP + G+ G RV ++PA G+G++A + +L +AG++DV + + G + + N+ A + LS+ Sbjct: 27 GRNFRFSALVVVGDENGHVGVGMGKAVEIPEAIRKGIEDAKKHLVEV--------AMVDTTVPHAIQGEFGRGRVLIMPATEGTGVIAGGPVRAVLELAGLKDVRAKSLGSNNPK-NMVGATINGLSR 145
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_GEOSL (30S ribosomal protein S5 OS=Geobacter sulfurreducens GN=rpsE PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.065e-13 Identity = 48/133 (36.09%), Postives = 70/133 (52.63%), Query Frame = 1 Query: 7 GQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNL--VPVRRGYWGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSKTYS 399 G+R F + VGDGNG +G G+ A EV AIR G+ AK NL VP+ G HT+P +V G G+ RV + PA G+G++A + + AG+ +V S G S N+ A ++ L++ S Sbjct: 28 GRRFSFSALVVVGDGNGCVGYGLGKANEVPEAIRKGVEQAKKNLIKVPIVEG---------HTIPYEVLGHFGAGRVLIKPASAGTGVIAGGAARAVFEAAGLHNVLSKCLG-SNNPHNVVKAAFNGLAQLRS 150
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_CLOPS (30S ribosomal protein S5 OS=Clostridium perfringens (strain SM101 / Type A) GN=rpsE PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.065e-13 Identity = 45/127 (35.43%), Postives = 72/127 (56.69%), Query Frame = 1 Query: 7 GQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGYWGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALS 387 G+ RF + VGD NGH+G+G + E+ AIR GI +AK NLV V + TVP ++ GK G+ V ++PA G+G++A + +L +AG++DV + + G + R N+ A + L+ Sbjct: 27 GRNFRFSALVVVGDENGHVGVGTGKSIEIPEAIRKGIEDAKKNLVEV--------SIVGTTVPHEIHGKFGTGDVLIMPATEGTGVIAGGPARSVLELAGLKDVRAKSLGSNNPR-NMVKATINGLA 144
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_CLOPE (30S ribosomal protein S5 OS=Clostridium perfringens GN=rpsE PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.065e-13 Identity = 45/127 (35.43%), Postives = 72/127 (56.69%), Query Frame = 1 Query: 7 GQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGYWGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALS 387 G+ RF + VGD NGH+G+G + E+ AIR GI +AK NLV V + TVP ++ GK G+ V ++PA G+G++A + +L +AG++DV + + G + R N+ A + L+ Sbjct: 27 GRNFRFSALVVVGDENGHVGVGTGKSIEIPEAIRKGIEDAKKNLVEV--------SIVGTTVPHEIHGKFGTGDVLIMPATEGTGVIAGGPARSVLELAGLKDVRAKSLGSNNPR-NMVKATINGLA 144
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_CLOP1 (30S ribosomal protein S5 OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=rpsE PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.065e-13 Identity = 45/127 (35.43%), Postives = 72/127 (56.69%), Query Frame = 1 Query: 7 GQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGYWGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALS 387 G+ RF + VGD NGH+G+G + E+ AIR GI +AK NLV V + TVP ++ GK G+ V ++PA G+G++A + +L +AG++DV + + G + R N+ A + L+ Sbjct: 27 GRNFRFSALVVVGDENGHVGVGTGKSIEIPEAIRKGIEDAKKNLVEV--------SIVGTTVPHEIHGKFGTGDVLIMPATEGTGVIAGGPARSVLELAGLKDVRAKSLGSNNPR-NMVKATINGLA 144
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_CARHZ (30S ribosomal protein S5 OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=rpsE PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.065e-13 Identity = 47/126 (37.30%), Postives = 71/126 (56.35%), Query Frame = 1 Query: 7 GQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGYWGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHAL 384 G+R F + VGD GH+G+G+ A EV AIR GI +AK NL+ V +N T+P ++ G+ G+ +V L PA G+G++A + +L MAG+ D+ + + G S N+A A AL Sbjct: 28 GRRFSFSALVVVGDQKGHVGVGLGKAPEVPDAIRKGIEDAKKNLIKVPI----VNT----TIPHEIIGEAGAGKVLLKPAAPGTGVIAGSAVRAILEMAGVRDILTKSLG-SNNPHNMAHATIEAL 144
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_BACHK (30S ribosomal protein S5 OS=Bacillus thuringiensis subsp. konkukian GN=rpsE PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.065e-13 Identity = 47/128 (36.72%), Postives = 70/128 (54.69%), Query Frame = 1 Query: 7 GQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGYWGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSK 390 G+R RF + VGD NGH+G G A+EV AIR I +AK NL+ V T+P ++G G+ V L PA G+G++A + +L +AG++D+ S + G S T N+ A + LS+ Sbjct: 28 GRRFRFAALVVVGDKNGHVGFGTGKAQEVPDAIRKAIEDAKKNLIAVPL--------VGTTIPHTINGHFGAGEVFLKPAAEGTGVIAGGPVRAVLELAGVQDILSKSLG-SNTPINMIRATVNGLSE 146
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_BACCZ (30S ribosomal protein S5 OS=Bacillus cereus (strain ZK / E33L) GN=rpsE PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.065e-13 Identity = 47/128 (36.72%), Postives = 70/128 (54.69%), Query Frame = 1 Query: 7 GQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGYWGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSK 390 G+R RF + VGD NGH+G G A+EV AIR I +AK NL+ V T+P ++G G+ V L PA G+G++A + +L +AG++D+ S + G S T N+ A + LS+ Sbjct: 28 GRRFRFAALVVVGDKNGHVGFGTGKAQEVPDAIRKAIEDAKKNLIAVPL--------VGTTIPHTINGHFGAGEVFLKPAAEGTGVIAGGPVRAVLELAGVQDILSKSLG-SNTPINMIRATVNGLSE 146 The following BLAST results are available for this feature:
BLAST of CX300722 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 238
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300722 ID=CX300722; Name=CX300722; organism=Citrus sinensis; type=EST; length=607bpback to top |