CX300722

Overview
NameCX300722
Unique NameCX300722
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_BACA2 (30S ribosomal protein S5 OS=Bacillus amyloliquefaciens (strain FZB42) GN=rpsE PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.816e-13
Identity = 45/128 (35.16%), Postives = 69/128 (53.91%), Query Frame = 1
Query:    7 GQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGYWGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSK 390
            G+R RF   + VGD NGH+G G   A+EV  AIR  + +AK NL+ V             T+P ++ G+ G+  + L PA  G+G++A    + +L +AG+ D+ S + G S T  N+  A    LS+
Sbjct:   30 GRRFRFAALVVVGDKNGHVGFGTGKAQEVPEAIRKAVEDAKKNLIEVPM--------VGTTIPHEIIGRFGAGNILLKPASEGTGVIAGGPVRAVLELAGVADILSKSLG-SNTPINMIRATLQGLSE 148          
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_PELPD (30S ribosomal protein S5 OS=Pelobacter propionicus (strain DSM 2379) GN=rpsE PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.372e-13
Identity = 45/131 (34.35%), Postives = 67/131 (51.15%), Query Frame = 1
Query:    7 GQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGYWGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSKTYS 399
            G+R  F   I VGDG G++G G+  A EV  AIR G+  AK NL+ V          Q  T+P ++ GK G+ R+ + PA  G+G++A    + +   AGI ++ S   G S    N+  A +  L +  S
Sbjct:   28 GRRFSFSALIVVGDGCGYVGYGLGKANEVPEAIRKGVEQAKKNLIKV-------PVNQNQTIPFEIEGKFGAGRLLMKPASAGTGVIAGGAARAIFEAAGINNILSKCLG-SNNPHNVVKAAFAGLQRLKS 150          
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_GEOTN (30S ribosomal protein S5 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rpsE PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.372e-13
Identity = 47/128 (36.72%), Postives = 68/128 (53.12%), Query Frame = 1
Query:    7 GQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGYWGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSK 390
            G+R RF   + VGD NGH+G G   A+EV  AIR  I +AK NL+ V             T+P +V G  G+  + L PA  G+G++A    + +L +AGI D+ S + G S T  N+  A +  L +
Sbjct:   28 GRRLRFSALVVVGDKNGHVGFGTGKAQEVPEAIRKAIEDAKKNLMEV--------PIVGTTIPHEVIGHFGAGEIILKPASEGTGVIAGGPARAVLELAGISDILSKSIG-SNTPINMVRATFDGLKQ 146          
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_GEOSW (30S ribosomal protein S5 OS=Geobacillus sp. (strain WCH70) GN=rpsE PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.372e-13
Identity = 47/128 (36.72%), Postives = 68/128 (53.12%), Query Frame = 1
Query:    7 GQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGYWGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSK 390
            G+R RF   + VGD NGH+G G   A+EV  AIR  I +AK NL+ V             T+P +V G  G+ ++ L PA  G+G++A    + +L +AGI D+ S + G S T  N+  A    L +
Sbjct:   28 GRRLRFSALVVVGDKNGHVGFGTGKAQEVPDAIRKAIEDAKKNLIEV--------PIVGTTIPHEVIGHFGAGKIILKPASEGTGVIAGGPARAVLELAGISDILSKSIG-SNTPINMVRATVDGLKQ 146          
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_DESRM (30S ribosomal protein S5 OS=Desulfotomaculum reducens (strain MI-1) GN=rpsE PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.372e-13
Identity = 43/128 (33.59%), Postives = 71/128 (55.47%), Query Frame = 1
Query:    7 GQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGYWGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSK 390
            G+R  F   + VGDGNGH+G G+  A EV  AIR GI +AK N++ V      LN     T+  ++ G+ G+ +V + PA +G+G++A    + +L +AG+ D+ + + G +    N+  A    L +
Sbjct:   28 GRRFSFSALVVVGDGNGHVGAGLGKAAEVPEAIRKGIEDAKKNMIKV-----PLNG---TTITHQIQGRFGAGKVLMKPAAKGTGVIAGGPVRAILELAGVRDILTKSLG-TNNANNMVNATMEGLKQ 146          
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_DEIGD (30S ribosomal protein S5 OS=Deinococcus geothermalis (strain DSM 11300) GN=rpsE PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.372e-13
Identity = 46/128 (35.94%), Postives = 71/128 (55.47%), Query Frame = 1
Query:    7 GQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNL--VPVRRGYWGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHAL 384
            G+R RF   + +GD NG +G+G+  A+EV  AI      A+ N+  VPV  G          T+P ++ G+  + RV L PA  G+G++A  VP+ +  +AGI ++ S   G SR + N+A AV+  L
Sbjct:   33 GRRFRFAALVILGDRNGRVGMGIGKAKEVPVAIEKAKAIARKNMITVPVENG----------TIPHEIVGENSTSRVLLKPAGPGTGVIAGTVPRSIAELAGITNMLSKELG-SRNKINVAYAVFDGL 149          
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_SYNAS (30S ribosomal protein S5 OS=Syntrophus aciditrophicus (strain SB) GN=rpsE PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.046e-13
Identity = 48/133 (36.09%), Postives = 69/133 (51.88%), Query Frame = 1
Query:    7 GQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAK--MNLVPVRRGYWGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSKTYS 399
            G+R RF   + VGDGNG +G G+  A EV  AIR G+  AK  M  + + +G          T+P +V GK G+ RV L PA  G+G++A    + +L +AGI ++ +   G S    NL  A    L +  S
Sbjct:   28 GRRFRFSAIVVVGDGNGSVGAGLGKAHEVPEAIRKGMEQAKKSMTKIEIEKG----------TIPYEVIGKFGAGRVLLKPASEGTGLIAGGAVRAVLEVAGIHNILTKCLG-SHNPHNLVKATIEGLCRLES 149          
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_LYSSC (30S ribosomal protein S5 OS=Lysinibacillus sphaericus (strain C3-41) GN=rpsE PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.046e-13
Identity = 47/128 (36.72%), Postives = 68/128 (53.12%), Query Frame = 1
Query:    7 GQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGYWGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSK 390
            G+R RF   + VGD NGH+G G   A+EV  AIR  + +AK NLV V R           T P  V G+ G+  + + PA  G+G++A    + +L +AGI D+ S + G S T  N+  A    L++
Sbjct:   29 GRRFRFTALVVVGDRNGHVGFGTGKAQEVPDAIRKAVEDAKKNLVEVPR--------VGGTTPHLVLGRFGAGEILIKPAAPGTGVIAGGPVRAVLELAGITDILSKSLG-SNTPINMVRATVQGLTE 147          
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_ENTFA (30S ribosomal protein S5 OS=Enterococcus faecalis GN=rpsE PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.046e-13
Identity = 48/128 (37.50%), Postives = 66/128 (51.56%), Query Frame = 1
Query:    7 GQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGYWGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSK 390
            G+R RF   + VGD NGH+G G   A+EV  AIR  I +AK NLV V             T+P +V G  G  R+ + PA  GSG+ A    + +L +AG+ D+ S + G S T  N+  A    L +
Sbjct:   28 GRRLRFAALVVVGDKNGHVGFGTGKAQEVPEAIRKAIEDAKKNLVEVPM--------VGSTIPHEVIGVFGGGRILMKPAVEGSGVAAGGPVRAVLELAGVADITSKSLG-SNTPINVVRATVEGLKQ 146          
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_DEIRA (30S ribosomal protein S5 OS=Deinococcus radiodurans GN=rpsE PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.046e-13
Identity = 45/125 (36.00%), Postives = 70/125 (56.00%), Query Frame = 1
Query:    7 GQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNL--VPVRRGYWGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVY 375
            G+R RF   + +GD NG +G+G+  A+EV  AI      A+ N+  VPV  G          T+P ++ G+  + RV L PA  G+G++A  VP+ +  +AGI ++ S   G SR + N+A AV+
Sbjct:   34 GRRFRFAALVILGDRNGRVGMGIGKAKEVPVAIEKAKAVARKNMITVPVENG----------TIPHEIVGENSTSRVLLKPAGPGTGVIAGTVPRSIAELAGITNMLSKELG-SRNKVNVAYAVF 147          
The following BLAST results are available for this feature:
BLAST of CX300722 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
RS5_BACA21.816e-1335.1630S ribosomal protein S5 OS=Bacillus amyloliquefac... [more]
RS5_PELPD2.372e-1334.3530S ribosomal protein S5 OS=Pelobacter propionicus... [more]
RS5_GEOTN2.372e-1336.7230S ribosomal protein S5 OS=Geobacillus thermodeni... [more]
RS5_GEOSW2.372e-1336.7230S ribosomal protein S5 OS=Geobacillus sp. (strai... [more]
RS5_DESRM2.372e-1333.5930S ribosomal protein S5 OS=Desulfotomaculum reduc... [more]
RS5_DEIGD2.372e-1335.9430S ribosomal protein S5 OS=Deinococcus geothermal... [more]
RS5_SYNAS4.046e-1336.0930S ribosomal protein S5 OS=Syntrophus aciditrophi... [more]
RS5_LYSSC4.046e-1336.7230S ribosomal protein S5 OS=Lysinibacillus sphaeri... [more]
RS5_ENTFA4.046e-1337.5030S ribosomal protein S5 OS=Enterococcus faecalis ... [more]
RS5_DEIRA4.046e-1336.0030S ribosomal protein S5 OS=Deinococcus radioduran... [more]

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Properties
Property NameValue
Genbank descriptionC08001E08SK PhyRootSw1 Citrus sinensis cDNA clone C08001E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300722 ID=CX300722; Name=CX300722; organism=Citrus sinensis; type=EST; length=607bp
ACCGCCGGTCAACGCACCCGCTTCAAGTGCTACATCGCTGTCGGTGATGG
CAACGGCCACATTGGTTTGGGTGTCAAGTGCGCTCGTGAAGTTGCCACTG
CTATCCGTGGAGGTATCATCAACGCCAAGATGAACCTTGTTCCAGTTCGT
CGTGGTTACTGGGGTCTTAACGCCGGTCAACCACACACTGTCCCTTGCAA
GGTCTCTGGAAAGTGCGGTTCCGTCCGTGTCAGATTGATCCCTGCCCCTC
GTGGTTCTGGTATCGTCGCTTCCGTTGTCCCAAAGAAGTTATTAAACATG
GCTGGTATTGAGGACGTTTACTCTTCCACCACTGGTCACTCCCGTACCAG
AGGTAACTTGGCAATGGCTGTCTACCACGCCTTATCCAAGACTTACAGCT
TCTTAACCCCTGACTTATGGGCTCCTACCCACTTCCAACCAACTCCTCAA
CAGGAATACTCTGATTTACTTGCCAAGAAGGCCAACAAATATTAAATTAC
TTTCATAGGATTGTGAGGAGAGGATAAGCGTGACTATTCTACGGTGCGAT
GTGCCGACCTCATATGATGTAATTTAATACAACAATATTCAAAAAAAAAA
AAAAAAA
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