CX300722
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_BACA2 (30S ribosomal protein S5 OS=Bacillus amyloliquefaciens (strain FZB42) GN=rpsE PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 1.816e-13 Identity = 45/128 (35.16%), Postives = 69/128 (53.91%), Query Frame = 1 Query: 7 GQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGYWGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSK 390 G+R RF + VGD NGH+G G A+EV AIR + +AK NL+ V T+P ++ G+ G+ + L PA G+G++A + +L +AG+ D+ S + G S T N+ A LS+ Sbjct: 30 GRRFRFAALVVVGDKNGHVGFGTGKAQEVPEAIRKAVEDAKKNLIEVPM--------VGTTIPHEIIGRFGAGNILLKPASEGTGVIAGGPVRAVLELAGVADILSKSLG-SNTPINMIRATLQGLSE 148
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_PELPD (30S ribosomal protein S5 OS=Pelobacter propionicus (strain DSM 2379) GN=rpsE PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.372e-13 Identity = 45/131 (34.35%), Postives = 67/131 (51.15%), Query Frame = 1 Query: 7 GQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGYWGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSKTYS 399 G+R F I VGDG G++G G+ A EV AIR G+ AK NL+ V Q T+P ++ GK G+ R+ + PA G+G++A + + AGI ++ S G S N+ A + L + S Sbjct: 28 GRRFSFSALIVVGDGCGYVGYGLGKANEVPEAIRKGVEQAKKNLIKV-------PVNQNQTIPFEIEGKFGAGRLLMKPASAGTGVIAGGAARAIFEAAGINNILSKCLG-SNNPHNVVKAAFAGLQRLKS 150
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_GEOTN (30S ribosomal protein S5 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rpsE PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.372e-13 Identity = 47/128 (36.72%), Postives = 68/128 (53.12%), Query Frame = 1 Query: 7 GQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGYWGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSK 390 G+R RF + VGD NGH+G G A+EV AIR I +AK NL+ V T+P +V G G+ + L PA G+G++A + +L +AGI D+ S + G S T N+ A + L + Sbjct: 28 GRRLRFSALVVVGDKNGHVGFGTGKAQEVPEAIRKAIEDAKKNLMEV--------PIVGTTIPHEVIGHFGAGEIILKPASEGTGVIAGGPARAVLELAGISDILSKSIG-SNTPINMVRATFDGLKQ 146
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_GEOSW (30S ribosomal protein S5 OS=Geobacillus sp. (strain WCH70) GN=rpsE PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.372e-13 Identity = 47/128 (36.72%), Postives = 68/128 (53.12%), Query Frame = 1 Query: 7 GQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGYWGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSK 390 G+R RF + VGD NGH+G G A+EV AIR I +AK NL+ V T+P +V G G+ ++ L PA G+G++A + +L +AGI D+ S + G S T N+ A L + Sbjct: 28 GRRLRFSALVVVGDKNGHVGFGTGKAQEVPDAIRKAIEDAKKNLIEV--------PIVGTTIPHEVIGHFGAGKIILKPASEGTGVIAGGPARAVLELAGISDILSKSIG-SNTPINMVRATVDGLKQ 146
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_DESRM (30S ribosomal protein S5 OS=Desulfotomaculum reducens (strain MI-1) GN=rpsE PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.372e-13 Identity = 43/128 (33.59%), Postives = 71/128 (55.47%), Query Frame = 1 Query: 7 GQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGYWGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSK 390 G+R F + VGDGNGH+G G+ A EV AIR GI +AK N++ V LN T+ ++ G+ G+ +V + PA +G+G++A + +L +AG+ D+ + + G + N+ A L + Sbjct: 28 GRRFSFSALVVVGDGNGHVGAGLGKAAEVPEAIRKGIEDAKKNMIKV-----PLNG---TTITHQIQGRFGAGKVLMKPAAKGTGVIAGGPVRAILELAGVRDILTKSLG-TNNANNMVNATMEGLKQ 146
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_DEIGD (30S ribosomal protein S5 OS=Deinococcus geothermalis (strain DSM 11300) GN=rpsE PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.372e-13 Identity = 46/128 (35.94%), Postives = 71/128 (55.47%), Query Frame = 1 Query: 7 GQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNL--VPVRRGYWGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHAL 384 G+R RF + +GD NG +G+G+ A+EV AI A+ N+ VPV G T+P ++ G+ + RV L PA G+G++A VP+ + +AGI ++ S G SR + N+A AV+ L Sbjct: 33 GRRFRFAALVILGDRNGRVGMGIGKAKEVPVAIEKAKAIARKNMITVPVENG----------TIPHEIVGENSTSRVLLKPAGPGTGVIAGTVPRSIAELAGITNMLSKELG-SRNKINVAYAVFDGL 149
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_SYNAS (30S ribosomal protein S5 OS=Syntrophus aciditrophicus (strain SB) GN=rpsE PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 4.046e-13 Identity = 48/133 (36.09%), Postives = 69/133 (51.88%), Query Frame = 1 Query: 7 GQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAK--MNLVPVRRGYWGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSKTYS 399 G+R RF + VGDGNG +G G+ A EV AIR G+ AK M + + +G T+P +V GK G+ RV L PA G+G++A + +L +AGI ++ + G S NL A L + S Sbjct: 28 GRRFRFSAIVVVGDGNGSVGAGLGKAHEVPEAIRKGMEQAKKSMTKIEIEKG----------TIPYEVIGKFGAGRVLLKPASEGTGLIAGGAVRAVLEVAGIHNILTKCLG-SHNPHNLVKATIEGLCRLES 149
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_LYSSC (30S ribosomal protein S5 OS=Lysinibacillus sphaericus (strain C3-41) GN=rpsE PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 4.046e-13 Identity = 47/128 (36.72%), Postives = 68/128 (53.12%), Query Frame = 1 Query: 7 GQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGYWGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSK 390 G+R RF + VGD NGH+G G A+EV AIR + +AK NLV V R T P V G+ G+ + + PA G+G++A + +L +AGI D+ S + G S T N+ A L++ Sbjct: 29 GRRFRFTALVVVGDRNGHVGFGTGKAQEVPDAIRKAVEDAKKNLVEVPR--------VGGTTPHLVLGRFGAGEILIKPAAPGTGVIAGGPVRAVLELAGITDILSKSLG-SNTPINMVRATVQGLTE 147
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_ENTFA (30S ribosomal protein S5 OS=Enterococcus faecalis GN=rpsE PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 4.046e-13 Identity = 48/128 (37.50%), Postives = 66/128 (51.56%), Query Frame = 1 Query: 7 GQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGYWGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSK 390 G+R RF + VGD NGH+G G A+EV AIR I +AK NLV V T+P +V G G R+ + PA GSG+ A + +L +AG+ D+ S + G S T N+ A L + Sbjct: 28 GRRLRFAALVVVGDKNGHVGFGTGKAQEVPEAIRKAIEDAKKNLVEVPM--------VGSTIPHEVIGVFGGGRILMKPAVEGSGVAAGGPVRAVLELAGVADITSKSLG-SNTPINVVRATVEGLKQ 146
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS5_DEIRA (30S ribosomal protein S5 OS=Deinococcus radiodurans GN=rpsE PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 4.046e-13 Identity = 45/125 (36.00%), Postives = 70/125 (56.00%), Query Frame = 1 Query: 7 GQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNL--VPVRRGYWGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVY 375 G+R RF + +GD NG +G+G+ A+EV AI A+ N+ VPV G T+P ++ G+ + RV L PA G+G++A VP+ + +AGI ++ S G SR + N+A AV+ Sbjct: 34 GRRFRFAALVILGDRNGRVGMGIGKAKEVPVAIEKAKAVARKNMITVPVENG----------TIPHEIVGENSTSRVLLKPAGPGTGVIAGTVPRSIAELAGITNMLSKELG-SRNKVNVAYAVF 147 The following BLAST results are available for this feature:
BLAST of CX300722 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 238
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300722 ID=CX300722; Name=CX300722; organism=Citrus sinensis; type=EST; length=607bpback to top |