CX300683 | Citrus Genome Database

Overview


Name	CX300683
Unique Name	CX300683
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	576

Libraries


Library Name	Type
PhyRootSw1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX300683 vs. ExPASy Swiss-Prot
Match: CSK21_ARATH (Casein kinase II subunit alpha-1 OS=Arabidopsis thaliana GN=CKA1 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 7.735e-29
Identity = 32/51 (62.75%), Postives = 43/51 (84.31%), Query Frame = -1

Query:  283 KPWGRFVTPENQHLVSEEALDLINRLLRYDHQERLTAQEAMAHPYFLPIRS 435
            KPW +F+  +NQHLVS EA+D +++LLRYDHQ+RLTA+EAMAH YF  +R+
Sbjct:  274 KPWSKFINADNQHLVSPEAIDFLDKLLRYDHQDRLTAKEAMAHAYFAQVRA 324

HSP 2 Score: 69.3218 bits (168), Expect = 7.735e-29
Identity = 33/51 (64.71%), Postives = 38/51 (74.51%), Query Frame = -3

Query:  422 FHGHDNHDQLVKIAKVLGTDELYDYLEKYDIELDSQFEGLLTSYARKAMGK 574
            F+GHDN DQLVKIAKVLGTDEL  YL KY +ELD Q E L+  ++RK   K
Sbjct:  228 FYGHDNQDQLVKIAKVLGTDELNAYLNKYQLELDPQLEALVGRHSRKPWSK 278

[Close]

BLAST of CX300683 vs. ExPASy Swiss-Prot
Match: CSK21_MOUSE (Casein kinase II subunit alpha OS=Mus musculus GN=Csnk2a1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.308e-28
Identity = 31/47 (65.96%), Postives = 42/47 (89.36%), Query Frame = -3

Query:  434 FHGHDNHDQLVKIAKVLGTDELYDYLEKYDIELDSQFEGLLTSYARK 574
            FHGHDN+DQLV+IAKVLGT++LYDY++KY+IELD +F  +L  ++RK
Sbjct:  233 FHGHDNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRHSRK 279

HSP 2 Score: 73.1738 bits (178), Expect = 1.308e-28
Identity = 33/52 (63.46%), Postives = 39/52 (75.00%), Query Frame = -1

Query:  280 KPWGRFVTPENQHLVSEEALDLINRLLRYDHQERLTAQEAMAHPYFLPIRSN 435
            K W RFV  ENQHLVS EALD +++LLRYDHQ RLT +EAM HP+F  +  N
Sbjct:  279 KRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTVREAMEHPFFYTVVKN 330

[Close]

BLAST of CX300683 vs. ExPASy Swiss-Prot
Match: CSK22_CHICK (Casein kinase II subunit alpha' OS=Gallus gallus PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.706e-28
Identity = 35/65 (53.85%), Postives = 47/65 (72.31%), Query Frame = -1

Query:  241 KPWGRFVTPENQHLVSEEALDLINRLLRYDHQERLTAQEAMAHPYFLPIRSNDGDYPTKKEEVIS 435
            K W  F+  EN+HLVS E LDL+++LLRYDHQ+RLTA+EAM HPYF P+   +   P+ +  V+S
Sbjct:  280 KRWENFIHSENRHLVSPEVLDLLDKLLRYDHQQRLTAKEAMEHPYFYPV-VKEQSQPSSENAVLS 343

HSP 2 Score: 70.4774 bits (171), Expect = 1.706e-28
Identity = 32/47 (68.09%), Postives = 38/47 (80.85%), Query Frame = -3

Query:  434 FHGHDNHDQLVKIAKVLGTDELYDYLEKYDIELDSQFEGLLTSYARK 574
            FHG DN+DQLV+IAKVLGTDELY YL+KY IELD  F  +L  ++RK
Sbjct:  234 FHGQDNYDQLVRIAKVLGTDELYGYLKKYHIELDPHFNDILGQHSRK 280

[Close]

BLAST of CX300683 vs. ExPASy Swiss-Prot
Match: CSK22_MOUSE (Casein kinase II subunit alpha' OS=Mus musculus GN=Csnk2a2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.891e-28
Identity = 33/49 (67.35%), Postives = 41/49 (83.67%), Query Frame = -1

Query:  289 KPWGRFVTPENQHLVSEEALDLINRLLRYDHQERLTAQEAMAHPYFLPI 435
            K W  F+  EN+HLVS EALDL+++LLRYDHQ+RLTA+EAM HPYF P+
Sbjct:  280 KRWENFIHSENRHLVSPEALDLLDKLLRYDHQQRLTAKEAMEHPYFYPV 328

HSP 2 Score: 69.3218 bits (168), Expect = 2.891e-28
Identity = 31/47 (65.96%), Postives = 38/47 (80.85%), Query Frame = -3

Query:  434 FHGHDNHDQLVKIAKVLGTDELYDYLEKYDIELDSQFEGLLTSYARK 574
            FHG DN+DQLV+IAKVLGTDELY YL+KY I+LD  F  +L  ++RK
Sbjct:  234 FHGQDNYDQLVRIAKVLGTDELYGYLKKYHIDLDPHFNDILGQHSRK 280

[Close]

BLAST of CX300683 vs. ExPASy Swiss-Prot
Match: CSK22_BOVIN (Casein kinase II subunit alpha' OS=Bos taurus GN=CSNK2A2 PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 2.891e-28
Identity = 33/49 (67.35%), Postives = 41/49 (83.67%), Query Frame = -1

Query:  289 KPWGRFVTPENQHLVSEEALDLINRLLRYDHQERLTAQEAMAHPYFLPI 435
            K W  F+  EN+HLVS EALDL+++LLRYDHQ+RLTA+EAM HPYF P+
Sbjct:  280 KRWENFIHSENRHLVSPEALDLLDKLLRYDHQQRLTAKEAMEHPYFYPV 328

HSP 2 Score: 69.3218 bits (168), Expect = 2.891e-28
Identity = 31/47 (65.96%), Postives = 38/47 (80.85%), Query Frame = -3

Query:  434 FHGHDNHDQLVKIAKVLGTDELYDYLEKYDIELDSQFEGLLTSYARK 574
            FHG DN+DQLV+IAKVLGTDELY YL+KY I+LD  F  +L  ++RK
Sbjct:  234 FHGQDNYDQLVRIAKVLGTDELYGYLKKYHIDLDPHFNDILGQHSRK 280

[Close]

BLAST of CX300683 vs. ExPASy Swiss-Prot
Match: CSK2A_CAEEL (Casein kinase II subunit alpha OS=Caenorhabditis elegans GN=kin-3 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.761e-28
Identity = 33/49 (67.35%), Postives = 39/49 (79.59%), Query Frame = -1

Query:  289 KPWGRFVTPENQHLVSEEALDLINRLLRYDHQERLTAQEAMAHPYFLPI 435
            K W RF+  ENQHLV+ EALD +++LLRYDH ERLTAQEAM H YF P+
Sbjct:  278 KRWERFIHAENQHLVTPEALDFLDKLLRYDHAERLTAQEAMGHEYFRPV 326

HSP 2 Score: 70.8626 bits (172), Expect = 3.761e-28
Identity = 30/47 (63.83%), Postives = 40/47 (85.11%), Query Frame = -3

Query:  434 FHGHDNHDQLVKIAKVLGTDELYDYLEKYDIELDSQFEGLLTSYARK 574
            FHGHDN+DQLV+IAKVLGTDELY+Y+ +Y I+LD +F  +L  ++RK
Sbjct:  232 FHGHDNYDQLVRIAKVLGTDELYEYIARYHIDLDPRFNDILGRHSRK 278

[Close]

BLAST of CX300683 vs. ExPASy Swiss-Prot
Match: CSK2A_MAIZE (Casein kinase II subunit alpha OS=Zea mays GN=ACK2 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.767e-28
Identity = 33/51 (64.71%), Postives = 42/51 (82.35%), Query Frame = -1

Query:  283 KPWGRFVTPENQHLVSEEALDLINRLLRYDHQERLTAQEAMAHPYFLPIRS 435
            KPW +F+  +NQHLVS EA+D +++LLRYDHQERLTA EAM HPYF  +R+
Sbjct:  274 KPWLKFMNADNQHLVSPEAIDFLDKLLRYDHQERLTALEAMTHPYFQQVRA 324

HSP 2 Score: 68.1662 bits (165), Expect = 3.767e-28
Identity = 33/47 (70.21%), Postives = 37/47 (78.72%), Query Frame = -3

Query:  434 FHGHDNHDQLVKIAKVLGTDELYDYLEKYDIELDSQFEGLLTSYARK 574
            F+GHDNHDQLVKIAKVLGTD L  YL KY IELD Q E L+  ++RK
Sbjct:  228 FYGHDNHDQLVKIAKVLGTDGLNVYLNKYRIELDPQLEALVGRHSRK 274

[Close]

BLAST of CX300683 vs. ExPASy Swiss-Prot
Match: CSK22_HUMAN (Casein kinase II subunit alpha' OS=Homo sapiens GN=CSNK2A2 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 8.304e-28
Identity = 33/49 (67.35%), Postives = 41/49 (83.67%), Query Frame = -1

Query:  289 KPWGRFVTPENQHLVSEEALDLINRLLRYDHQERLTAQEAMAHPYFLPI 435
            K W  F+  EN+HLVS EALDL+++LLRYDHQ+RLTA+EAM HPYF P+
Sbjct:  280 KRWENFIHSENRHLVSPEALDLLDKLLRYDHQQRLTAKEAMEHPYFYPV 328

HSP 2 Score: 67.781 bits (164), Expect = 8.304e-28
Identity = 30/47 (63.83%), Postives = 38/47 (80.85%), Query Frame = -3

Query:  434 FHGHDNHDQLVKIAKVLGTDELYDYLEKYDIELDSQFEGLLTSYARK 574
            FHG DN+DQLV+IAKVLGT+ELY YL+KY I+LD  F  +L  ++RK
Sbjct:  234 FHGQDNYDQLVRIAKVLGTEELYGYLKKYHIDLDPHFNDILGQHSRK 280

[Close]

BLAST of CX300683 vs. ExPASy Swiss-Prot
Match: CSK23_ARATH (Probable casein kinase II subunit alpha OS=Arabidopsis thaliana GN=At2g23080 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.387e-27
Identity = 30/51 (58.82%), Postives = 43/51 (84.31%), Query Frame = -1

Query:  283 KPWGRFVTPENQHLVSEEALDLINRLLRYDHQERLTAQEAMAHPYFLPIRS 435
            KPW +F+  +NQHLVS EA+D +++LL+YDHQ+RLTA+EAM HPYF  +++
Sbjct:  274 KPWSKFINADNQHLVSPEAIDFLDKLLQYDHQDRLTAREAMDHPYFAQVKA 324

HSP 2 Score: 66.2402 bits (160), Expect = 2.387e-27
Identity = 31/51 (60.78%), Postives = 37/51 (72.55%), Query Frame = -3

Query:  422 FHGHDNHDQLVKIAKVLGTDELYDYLEKYDIELDSQFEGLLTSYARKAMGK 574
            F+GHDNHDQLVKIAKVLGT+EL  YL KY ++LD Q E L+  +  K   K
Sbjct:  228 FYGHDNHDQLVKIAKVLGTNELDHYLNKYQLDLDPQLEALVGRHVPKPWSK 278

[Close]

BLAST of CX300683 vs. ExPASy Swiss-Prot
Match: CSK2A_SCHPO (Casein kinase II subunit alpha OS=Schizosaccharomyces pombe GN=cka1 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.110e-25
Identity = 31/47 (65.96%), Postives = 39/47 (82.98%), Query Frame = -1

Query:  298 EKPWGRFVTPENQHLVSEEALDLINRLLRYDHQERLTAQEAMAHPYF 438
            ++ W  FV  +N+ L ++EA+DL+NRLLRYDHQERLT QEAMAHPYF
Sbjct:  282 KRDWYSFVNRDNRSLANDEAIDLLNRLLRYDHQERLTCQEAMAHPYF 328

HSP 2 Score: 64.3142 bits (155), Expect = 2.110e-25
Identity = 28/47 (59.57%), Postives = 37/47 (78.72%), Query Frame = -3

Query:  434 FHGHDNHDQLVKIAKVLGTDELYDYLEKYDIELDSQFEGLLTSYARK 574
            F G DN+DQLVKIAKVLGTDEL+ Y++KY I LD Q++ +L  Y ++
Sbjct:  237 FRGRDNYDQLVKIAKVLGTDELFAYVQKYQIVLDRQYDNILGQYPKR 283

The following BLAST results are available for this feature:

BLAST of CX300683 vs. ExPASy Swiss-Prot

BLAST of CX300683 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26


Match Name	E-value	Identity	Description
CSK21_ARATH	7.735e-29	62.75	Casein kinase II subunit alpha-1 OS=Arabidopsis th...	[more]
CSK21_MOUSE	1.308e-28	65.96	Casein kinase II subunit alpha OS=Mus musculus GN=...	[more]
CSK22_CHICK	1.706e-28	53.85	Casein kinase II subunit alpha' OS=Gallus gallus P...	[more]
CSK22_MOUSE	2.891e-28	67.35	Casein kinase II subunit alpha' OS=Mus musculus GN...	[more]
CSK22_BOVIN	2.891e-28	67.35	Casein kinase II subunit alpha' OS=Bos taurus GN=C...	[more]
CSK2A_CAEEL	3.761e-28	67.35	Casein kinase II subunit alpha OS=Caenorhabditis e...	[more]
CSK2A_MAIZE	3.767e-28	64.71	Casein kinase II subunit alpha OS=Zea mays GN=ACK2...	[more]
CSK22_HUMAN	8.304e-28	67.35	Casein kinase II subunit alpha' OS=Homo sapiens GN...	[more]
CSK23_ARATH	2.387e-27	58.82	Probable casein kinase II subunit alpha OS=Arabido...	[more]
CSK2A_SCHPO	2.110e-25	65.96	Casein kinase II subunit alpha OS=Schizosaccharomy...	[more]

Pages

Properties


Property Name	Value
Genbank description	C08001B02SK PhyRootSw1 Citrus sinensis cDNA clone C08001B02, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX300683 ID=CX300683; Name=CX300683; organism=Citrus sinensis; type=EST; length=576bp
CTCGTGCCGAATTCGGCACGAGGTTTTTTTTTTTTTTTTTGAATCATTTC
AATTTGTTAATATTATGATATGATATAGATAGATGAAGGACTTTTAAACT
TCTCTGAAATCTCCTCCCACAAAACAAACAAAAGGTACAAACAAAAATCA
TGATTATGTTATTTATTATATATCACTCTTCCATCTCATCTCAACATTCC
GTTATGAGAGAGGAATAACTCTTCAATCACTATCGACTAATGATATAACT
TCTTCCTTCTTTGTAGGATAGTCACCATCATTGGATCGTATTGGAAGGAA
ATAAGGATGAGCCATAGCTTCTTGGGCTGTTAAGCGCTCTTGATGATCAT
ATCTGAGCAATCTATTAATTAAATCTAAAGCTTCTTCAGAAACTAGATGT
TGATTTTCTGGAGTAACAAATCTTCCCCATGGCTTTTCTTGCATAAGAGG
TTAAAAGACCTTCAAACTGACTATCCAACTCTATATCATACTTCTCCAAA
TAATCATAAAGTTCATCTGTACCCAGAACCTTAGCTATCTTCACTAACTG
ATCATGATTATCATGTCCATGAAAGA