CX300681

Overview
NameCX300681
Unique NameCX300681
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4997 contig Csv1_Contig4997:16..616. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300681 vs. ExPASy Swiss-Prot
Match: ACTN4_CHICK (Alpha-actinin-4 OS=Gallus gallus GN=ACTN4 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.147e-11
Identity = 38/111 (34.23%), Postives = 68/111 (61.26%), Query Frame = 1
Query:   52 ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPT-----EAELADMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEILEAFKVFDKDGNGFISAAELR 369
            A  +++EQ+ EF+ +F+ FDKD  G +  +E    + SLG +       +AE   +++ VD +G+G++ F  F+  M+R+  DTD+ ++++ +FKV   D N +I+A ELR
Sbjct:  752 AKGISQEQMQEFRASFNHFDKDHCGALGPEEFKACLISLGYDVENDRQGDAEFNRIMSLVDPNGSGSVTFQAFIDFMSRETTDTDTADQVIASFKVLAGDKN-YITAEELR 861          
BLAST of CX300681 vs. ExPASy Swiss-Prot
Match: ACTN4_PONAB (Alpha-actinin-4 OS=Pongo abelii GN=ACTN4 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.662e-11
Identity = 39/111 (35.14%), Postives = 66/111 (59.46%), Query Frame = 1
Query:   52 ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPT-----EAELADMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEILEAFKVFDKDGNGFISAAELR 369
            A  +++EQ+ EF+ +F+ FDKD  G +  +E    + SLG +       EAE   +++ VD + +G + F  F+  M+R+  DTD+ ++++ +FKV   D N FI+A ELR
Sbjct:  759 AKGISQEQMQEFRASFNHFDKDHGGALGPEEFKACLISLGYDVENDRQGEAEFNRIMSLVDPNHSGLVTFQAFIDFMSRETTDTDTADQVIASFKVLAGDKN-FITAEELR 868          
BLAST of CX300681 vs. ExPASy Swiss-Prot
Match: ACTN4_HUMAN (Alpha-actinin-4 OS=Homo sapiens GN=ACTN4 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.662e-11
Identity = 39/111 (35.14%), Postives = 66/111 (59.46%), Query Frame = 1
Query:   52 ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPT-----EAELADMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEILEAFKVFDKDGNGFISAAELR 369
            A  +++EQ+ EF+ +F+ FDKD  G +  +E    + SLG +       EAE   +++ VD + +G + F  F+  M+R+  DTD+ ++++ +FKV   D N FI+A ELR
Sbjct:  759 AKGISQEQMQEFRASFNHFDKDHGGALGPEEFKACLISLGYDVENDRQGEAEFNRIMSLVDPNHSGLVTFQAFIDFMSRETTDTDTADQVIASFKVLAGDKN-FITAEELR 868          
BLAST of CX300681 vs. ExPASy Swiss-Prot
Match: ACTN4_RAT (Alpha-actinin-4 OS=Rattus norvegicus GN=Actn4 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 6.246e-11
Identity = 38/111 (34.23%), Postives = 66/111 (59.46%), Query Frame = 1
Query:   52 ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPT-----EAELADMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEILEAFKVFDKDGNGFISAAELR 369
            A  +++EQ+ EF+ +F+ FDKD  G +  +E    + SLG +       +AE   +++ VD + +G + F  F+  M+R+  DTD+ ++++ +FKV   D N FI+A ELR
Sbjct:  759 AKGISQEQMQEFRASFNHFDKDHGGALGPEEFKACLISLGYDVENDRQGDAEFNRIMSVVDPNHSGLVTFQAFIDFMSRETTDTDTADQVIASFKVLAGDKN-FITAEELR 868          
BLAST of CX300681 vs. ExPASy Swiss-Prot
Match: ACTN4_MOUSE (Alpha-actinin-4 OS=Mus musculus GN=Actn4 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.246e-11
Identity = 38/111 (34.23%), Postives = 66/111 (59.46%), Query Frame = 1
Query:   52 ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPT-----EAELADMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEILEAFKVFDKDGNGFISAAELR 369
            A  +++EQ+ EF+ +F+ FDKD  G +  +E    + SLG +       +AE   +++ VD + +G + F  F+  M+R+  DTD+ ++++ +FKV   D N FI+A ELR
Sbjct:  760 AKGISQEQMQEFRASFNHFDKDHGGALGPEEFKACLISLGYDVENDRQGDAEFNRIMSVVDPNHSGLVTFQAFIDFMSRETTDTDTADQVIASFKVLAGDKN-FITAEELR 869          
BLAST of CX300681 vs. ExPASy Swiss-Prot
Match: ACTN4_BOVIN (Alpha-actinin-4 OS=Bos taurus GN=ACTN4 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.246e-11
Identity = 38/111 (34.23%), Postives = 66/111 (59.46%), Query Frame = 1
Query:   52 ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPT-----EAELADMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEILEAFKVFDKDGNGFISAAELR 369
            A  +++EQ+ EF+ +F+ FDKD  G +  +E    + SLG +       +AE   +++ VD + +G + F  F+  M+R+  DTD+ ++++ +FKV   D N FI+A ELR
Sbjct:  759 AKGISQEQMQEFRASFNHFDKDHGGALGPEEFKACLISLGYDVENDRQGDAEFNRIMSVVDPNHSGLVTFQAFIDFMSRETTDTDTADQVIASFKVLAGDKN-FITAEELR 868          
BLAST of CX300681 vs. ExPASy Swiss-Prot
Match: ACTN1_CHICK (Alpha-actinin-1 OS=Gallus gallus GN=ACTN1 PE=1 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 8.157e-11
Identity = 37/111 (33.33%), Postives = 66/111 (59.46%), Query Frame = 1
Query:   52 ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQN-----PTEAELADMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEILEAFKVFDKDGNGFISAAELR 369
            A  +++EQ+ EF+ +F+ FD+D  GT+  +E    + SLG +       EAE A +++ VD +  G + F  F+  M+R+  DTD+ ++++ +FK+   D N +I+  ELR
Sbjct:  741 AKGISQEQMNEFRASFNHFDRDHSGTLGPEEFKACLISLGYDIGNDAQGEAEFARIMSIVDPNRMGVVTFQAFIDFMSRETADTDTADQVMASFKILAGDKN-YITVDELR 850          
The following BLAST results are available for this feature:
BLAST of CX300681 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 487
Match NameE-valueIdentityDescription
ACTN4_CHICK2.147e-1134.23Alpha-actinin-4 OS=Gallus gallus GN=ACTN4 PE=1 SV=... [more]
ACTN4_PONAB3.662e-1135.14Alpha-actinin-4 OS=Pongo abelii GN=ACTN4 PE=2 SV=1[more]
ACTN4_HUMAN3.662e-1135.14Alpha-actinin-4 OS=Homo sapiens GN=ACTN4 PE=1 SV=2[more]
ACTN4_RAT6.246e-1134.23Alpha-actinin-4 OS=Rattus norvegicus GN=Actn4 PE=1... [more]
ACTN4_MOUSE6.246e-1134.23Alpha-actinin-4 OS=Mus musculus GN=Actn4 PE=1 SV=1[more]
ACTN4_BOVIN6.246e-1134.23Alpha-actinin-4 OS=Bos taurus GN=ACTN4 PE=2 SV=1[more]
ACTN1_CHICK8.157e-1133.33Alpha-actinin-1 OS=Gallus gallus GN=ACTN1 PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionC08001A12SK PhyRootSw1 Citrus sinensis cDNA clone C08001A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300681 ID=CX300681; Name=CX300681; organism=Citrus sinensis; type=EST; length=598bp
ATCACAAGATACCCTCCTCCTAACACTCCATAACTTAAATACATTAAAAT
GGCTGATCAATTAACTGAAGAGCAAATTGCTGAGTTCAAGGAAGCATTCT
CCTTATTCGACAAGGACGGAGATGGAACCATCACCACCAAGGAGTTAGGA
ACTGTCATGAGATCTCTTGGTCAGAACCCAACTGAGGCTGAGTTAGCTGA
TATGATCAACGAAGTCGATGCTGATGGCAACGGAACCATCGATTTCCCTG
AGTTCTTAACCATGATGGCCCGCAAGATGAAGGATACTGACTCTGAGGAG
GAAATCCTTGAAGCTTTCAAGGTCTTCGACAAGGACGGCAATGGATTCAT
CTCTGCCGCTGAGTTAAGACACATCATGACCAACTTAGGAGAGAAGTTGT
CGGATGAGGAAGTCGACGAAATGATCCGTGAAGCTGATATTGACGGGGAT
GGTCAGATCAACTACGAAGAGTTCGTCAAGATGATGATGTCCAAGTAAAT
CGTTTGATGACGTCATAAGAGTGTTTCCTCTGAGTGATGCACGCGGTGCG
GGTATAGCGAAGAGGATCACATAGATTATATTGAGACAAATCATTATA
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