EY680036

Overview
NameEY680036
Unique NameEY680036
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length629
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680036 vs. ExPASy Swiss-Prot
Match: CH601_MYCSK (60 kDa chaperonin 1 OS=Mycobacterium sp. (strain KMS) GN=groL1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.804e-11
Identity = 39/79 (49.37%), Postives = 52/79 (65.82%), Query Frame = 3
Query:    6 VVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 242
            VV+EKV +S     G NAATG YEDL+AAG+ DP KV R  L++A+S+A  FL ++ VV + K  + A PAG+P    G
Sbjct:  461 VVAEKVRNSAAGT-GLNAATGEYEDLLAAGVADPVKVTRSALQNAASIAALFLTTEAVVAD-KPEKSAAPAGDPTGGMG 537          
BLAST of EY680036 vs. ExPASy Swiss-Prot
Match: CH601_MYCSJ (60 kDa chaperonin 1 OS=Mycobacterium sp. (strain JLS) GN=groL1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.804e-11
Identity = 39/79 (49.37%), Postives = 52/79 (65.82%), Query Frame = 3
Query:    6 VVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 242
            VV+EKV +S     G NAATG YEDL+AAG+ DP KV R  L++A+S+A  FL ++ VV + K  + A PAG+P    G
Sbjct:  461 VVAEKVRNSAAGT-GLNAATGEYEDLLAAGVADPVKVTRSALQNAASIAALFLTTEAVVAD-KPEKSAAPAGDPTGGMG 537          
BLAST of EY680036 vs. ExPASy Swiss-Prot
Match: CH60_METSB (60 kDa chaperonin OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=groL PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.356e-11
Identity = 35/81 (43.21%), Postives = 50/81 (61.73%), Query Frame = 3
Query:    3 SVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVE-IKEPEPAMPAGNPMDNSG 242
            +VV  K++ + ++ YGYNA T  Y DL+  GIIDPTKVVR  L+ A+SV    + ++ ++ E  K+  PAMP G  M   G
Sbjct:  463 AVVVGKLIENPSYAYGYNAQTDEYGDLVKLGIIDPTKVVRTALQDAASVGGLLITTEAIIAEQPKKDSPAMPGGGGMGGMG 543          
BLAST of EY680036 vs. ExPASy Swiss-Prot
Match: CH60_LEGMI (60 kDa chaperonin OS=Legionella micdadei GN=groL PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.356e-11
Identity = 35/82 (42.68%), Postives = 52/82 (63.41%), Query Frame = 3
Query:    3 SVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 248
            SV+  KV  S ++ +G+NAATG Y D++  GI+DPTKV R  L++A+SVA   L ++C+V ++ + E  M AG      G G
Sbjct:  460 SVIVNKVAESKDN-FGFNAATGEYGDMVEMGILDPTKVTRTALQNAASVASLMLTTECMVADLPKKEEPMGAGEMGGMGGMG 540          
BLAST of EY680036 vs. ExPASy Swiss-Prot
Match: CH60_LACSS (60 kDa chaperonin OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=groL PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.356e-11
Identity = 40/82 (48.78%), Postives = 53/82 (64.63%), Query Frame = 3
Query:    3 SVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 248
            SV+ EKV  S   + GYNAA GN+E+++ AGI+DPTKV R  L++A+SVA   L ++ VV +  E  PA  AG  MD S  G
Sbjct:  460 SVIVEKV-KSQPVEVGYNAANGNWENMIEAGILDPTKVTRSALQNAASVAALMLTTEAVVADKPEDNPAPAAG--MDPSAMG 538          
BLAST of EY680036 vs. ExPASy Swiss-Prot
Match: CH60_GRABC (60 kDa chaperonin OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=groL PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.356e-11
Identity = 33/80 (41.25%), Postives = 53/80 (66.25%), Query Frame = 3
Query:    3 SVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 242
            +V++ KVL +  + +G++A TG ++DL++AGIIDP KVVR  L+ A+SVA   + ++ ++ E  +PE   PAG P    G
Sbjct:  463 AVIAGKVLENGTYNFGFDAQTGEFKDLVSAGIIDPAKVVRTALQDAASVAALLITTEAMIAE--KPEKKAPAGAPPGGMG 540          
BLAST of EY680036 vs. ExPASy Swiss-Prot
Match: CH60_GEOLS (60 kDa chaperonin OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=groL PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.356e-11
Identity = 34/72 (47.22%), Postives = 48/72 (66.67%), Query Frame = 3
Query:    3 SVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPA 218
            S+V +KV  +    +GYNAA   Y D++ AGIIDPTKV RC L++ASSVA   L ++C++ E  + +  MPA
Sbjct:  462 SIVVDKV-KNGKEAFGYNAADDTYVDMLEAGIIDPTKVSRCALQNASSVAGLMLTTECMIAEKPKKDSGMPA 532          
BLAST of EY680036 vs. ExPASy Swiss-Prot
Match: CH60_DEIGD (60 kDa chaperonin OS=Deinococcus geothermalis (strain DSM 11300) GN=groL PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.356e-11
Identity = 35/84 (41.67%), Postives = 52/84 (61.90%), Query Frame = 3
Query:    3 SVVSEKVLSSDNHKYGYNAATGNY-EDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 251
            SV+   VL+SD  +YGYNAATG + +D++AAGI+DP KV R  L++A+S+    L ++ +V +  E E A  A    D  G  +
Sbjct:  462 SVIVNAVLNSDKPRYGYNAATGEFVDDMVAAGIVDPAKVTRTALQNAASIGGLILTTEAIVSDKPEKEKAPAAAGAPDMGGMDF 545          
BLAST of EY680036 vs. ExPASy Swiss-Prot
Match: CH60_CLOBB (60 kDa chaperonin OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=groL PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.356e-11
Identity = 38/78 (48.72%), Postives = 54/78 (69.23%), Query Frame = 3
Query:    3 SVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPA-GNPMD 233
            SV+ EKV +S+    GY+A  G Y +++ +GI+DPTKV R  L++A+SV+ TFL ++  V EI + EPAMPA G  MD
Sbjct:  461 SVIIEKVKNSEVGT-GYDALYGKYVNMIKSGIVDPTKVTRSALQNAASVSATFLTTEAAVAEIPQKEPAMPAPGMGMD 537          
BLAST of EY680036 vs. ExPASy Swiss-Prot
Match: CH60_CLOBA (60 kDa chaperonin OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=groL PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.356e-11
Identity = 38/78 (48.72%), Postives = 54/78 (69.23%), Query Frame = 3
Query:    3 SVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPA-GNPMD 233
            SV+ EKV +S+    GY+A  G Y +++ +GI+DPTKV R  L++A+SV+ TFL ++  V EI + EPAMPA G  MD
Sbjct:  461 SVIIEKVKNSEVGT-GYDALYGKYVNMIKSGIVDPTKVTRSALQNAASVSATFLTTEAAVAEIPQKEPAMPAPGMGMD 537          
The following BLAST results are available for this feature:
BLAST of EY680036 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 247
Match NameE-valueIdentityDescription
CH601_MYCSK1.804e-1149.3760 kDa chaperonin 1 OS=Mycobacterium sp. (strain K... [more]
CH601_MYCSJ1.804e-1149.3760 kDa chaperonin 1 OS=Mycobacterium sp. (strain J... [more]
CH60_METSB2.356e-1143.2160 kDa chaperonin OS=Methylocella silvestris (stra... [more]
CH60_LEGMI2.356e-1142.6860 kDa chaperonin OS=Legionella micdadei GN=groL P... [more]
CH60_LACSS2.356e-1148.7860 kDa chaperonin OS=Lactobacillus sakei subsp. sa... [more]
CH60_GRABC2.356e-1141.2560 kDa chaperonin OS=Granulibacter bethesdensis (s... [more]
CH60_GEOLS2.356e-1147.2260 kDa chaperonin OS=Geobacter lovleyi (strain ATC... [more]
CH60_DEIGD2.356e-1141.6760 kDa chaperonin OS=Deinococcus geothermalis (str... [more]
CH60_CLOBB2.356e-1148.7260 kDa chaperonin OS=Clostridium botulinum (strain... [more]
CH60_CLOBA2.356e-1148.7260 kDa chaperonin OS=Clostridium botulinum (strain... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-006-G03-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680036 ID=EY680036; Name=EY680036; organism=Citrus sinensis; type=EST; length=629bp
GAAGTGTGGTCAGCGAGAAGGTGCTTTCAAGTGACAATCATAAATATGGA
TACAATGCTGCAACTGGAAACTACGAAGATCTAATGGCTGCAGGAATTAT
TGATCCTACCAAGGTGGTTAGATGTTGCTTGGAGCATGCTTCCTCGGTGG
CAAAAACCTTCTTGATGTCCGACTGTGTGGTGGTTGAGATCAAGGAGCCT
GAACCCGCTATGCCTGCGGGTAACCCTATGGACAACTCAGGATATGGATA
CTAAGCTAATTAACAAGGTCACGGGAGGCAAGCAAATAAGGTTCTGACTT
CGTTATAGCAACTATCTTTCAGTTTGACAGCGTTGGGTTCTCTTCTTCTT
GTAAATTCAATTACTCGACTTAGTAGAGTTTATGGATTCTGGTGAGGATA
GCTTGCCAGAGTACGGCTCGTATTAATTTGCAATTAGATGTACAATTGCA
ATGATTTTGAACTTTTTGAGTGAAAGAAATTTTATTTTGCTCATCTCCTT
CACAGTCTGATACTAATTCTGCGGGTACTCACATTTGTTACTGTTCACTG
TTCCTCGAGCTTAAATGTTATAACTCTTGGTCTTGAATGGTTACATGATT
TTACACCCAAAAAAAAAAAAAAAAAGGGC
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