EY680036

Overview
NameEY680036
Unique NameEY680036
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length629
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680036 vs. ExPASy Swiss-Prot
Match: CH604_BRASB (60 kDa chaperonin 4 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=groL4 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.954e-11
Identity = 31/79 (39.24%), Postives = 53/79 (67.09%), Query Frame = 3
Query:    3 SVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE---PAMPAGNPM 230
            SV+  K+L  + + YG+++ TG+Y ++++ GIIDPTKVVR  +++A+SVA   + ++ +V E+ +     PAMP G  M
Sbjct:  463 SVIVGKILEKEQYAYGFDSQTGDYVNMVSKGIIDPTKVVRTAIQNAASVASLLITTEAMVAELPKKNAGGPAMPPGGGM 541          
BLAST of EY680036 vs. ExPASy Swiss-Prot
Match: CH603_RHIL3 (60 kDa chaperonin 3 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=groL3 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.954e-11
Identity = 34/79 (43.04%), Postives = 48/79 (60.76%), Query Frame = 3
Query:    3 SVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVE--IKEPEPAMPAGNPMD 233
            SV+  K+       YG+NA TG Y DL A G+IDP KVVR  L+ A+S+A   + ++ ++ E   K+  P MPAG+ MD
Sbjct:  463 SVIVGKLREKSEFSYGWNAQTGEYGDLYAQGVIDPAKVVRTALQDAASIAGLLVTTEAMIAEKPRKDAPPPMPAGHGMD 541          
BLAST of EY680036 vs. ExPASy Swiss-Prot
Match: CH602_PROM5 (60 kDa chaperonin 2 OS=Prochlorococcus marinus (strain MIT 9515) GN=groL2 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.954e-11
Identity = 33/83 (39.76%), Postives = 53/83 (63.86%), Query Frame = 3
Query:    3 SVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 251
            +V++E V S   +  G+NAATG Y D+ +AGI+DP KV R  L++A+S+A   L ++C+V ++ E + + PAG P     + Y
Sbjct:  463 AVIAENVKSKPFND-GFNAATGEYVDMSSAGIVDPAKVTRSGLQNAASIAGMVLTTECIVADMPEKKESAPAGAPGMGGDFDY 544          
BLAST of EY680036 vs. ExPASy Swiss-Prot
Match: CH602_NOCSJ (60 kDa chaperonin 2 OS=Nocardioides sp. (strain BAA-499 / JS614) GN=groL2 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.954e-11
Identity = 37/79 (46.84%), Postives = 51/79 (64.56%), Query Frame = 3
Query:    6 VVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 242
            VV+EKV       +G NAATG Y D++A+GIIDP KV R  L++A+S+A  FL ++ VV +  +PE A P G+P    G
Sbjct:  462 VVAEKVRGL-TAGHGLNAATGEYVDMIASGIIDPAKVTRSALQNAASIAALFLTTEAVVAD--KPEKAAPMGDPSGGMG 537          
BLAST of EY680036 vs. ExPASy Swiss-Prot
Match: CH601_RHOSH (60 kDa chaperonin 1 OS=Rhodobacter sphaeroides GN=groL1 PE=1 SV=4)

HSP 1 Score: 67.0106 bits (162), Expect = 8.954e-11
Identity = 33/75 (44.00%), Postives = 47/75 (62.67%), Query Frame = 3
Query:    3 SVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 227
            SVV+ KV  S+   +G+NA T  Y D+   G+IDP KVVR  LE A+SVA   + ++ ++ +  +PEP  PAG P
Sbjct:  463 SVVAGKVRESNEKSFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVASLLITTEAMIAD--KPEPKSPAGGP 535          
BLAST of EY680036 vs. ExPASy Swiss-Prot
Match: CH601_RHOS4 (60 kDa chaperonin 1 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=groL1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.954e-11
Identity = 33/75 (44.00%), Postives = 47/75 (62.67%), Query Frame = 3
Query:    3 SVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 227
            SVV+ KV  S+   +G+NA T  Y D+   G+IDP KVVR  LE A+SVA   + ++ ++ +  +PEP  PAG P
Sbjct:  463 SVVAGKVRESNEKSFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVASLLITTEAMIAD--KPEPKSPAGGP 535          
BLAST of EY680036 vs. ExPASy Swiss-Prot
Match: CH601_MYCVP (60 kDa chaperonin 1 OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=groL1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.954e-11
Identity = 37/79 (46.84%), Postives = 51/79 (64.56%), Query Frame = 3
Query:    6 VVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 242
            VV+EKV +     +G NAATG YEDL+ AG+ DP KV R  L++A+S+A  FL ++ VV + K  + A PAG+P    G
Sbjct:  461 VVAEKVTNLPAG-HGLNAATGEYEDLLKAGVADPVKVTRSALQNAASIAALFLTTEAVVAD-KPEKAAAPAGDPTGGMG 537          
The following BLAST results are available for this feature:
BLAST of EY680036 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 247
Match NameE-valueIdentityDescription
CH604_BRASB8.954e-1139.2460 kDa chaperonin 4 OS=Bradyrhizobium sp. (strain ... [more]
CH603_RHIL38.954e-1143.0460 kDa chaperonin 3 OS=Rhizobium leguminosarum bv.... [more]
CH602_PROM58.954e-1139.7660 kDa chaperonin 2 OS=Prochlorococcus marinus (st... [more]
CH602_NOCSJ8.954e-1146.8460 kDa chaperonin 2 OS=Nocardioides sp. (strain BA... [more]
CH601_RHOSH8.954e-1144.0060 kDa chaperonin 1 OS=Rhodobacter sphaeroides GN=... [more]
CH601_RHOS48.954e-1144.0060 kDa chaperonin 1 OS=Rhodobacter sphaeroides (st... [more]
CH601_MYCVP8.954e-1146.8460 kDa chaperonin 1 OS=Mycobacterium vanbaalenii (... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-006-G03-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680036 ID=EY680036; Name=EY680036; organism=Citrus sinensis; type=EST; length=629bp
GAAGTGTGGTCAGCGAGAAGGTGCTTTCAAGTGACAATCATAAATATGGA
TACAATGCTGCAACTGGAAACTACGAAGATCTAATGGCTGCAGGAATTAT
TGATCCTACCAAGGTGGTTAGATGTTGCTTGGAGCATGCTTCCTCGGTGG
CAAAAACCTTCTTGATGTCCGACTGTGTGGTGGTTGAGATCAAGGAGCCT
GAACCCGCTATGCCTGCGGGTAACCCTATGGACAACTCAGGATATGGATA
CTAAGCTAATTAACAAGGTCACGGGAGGCAAGCAAATAAGGTTCTGACTT
CGTTATAGCAACTATCTTTCAGTTTGACAGCGTTGGGTTCTCTTCTTCTT
GTAAATTCAATTACTCGACTTAGTAGAGTTTATGGATTCTGGTGAGGATA
GCTTGCCAGAGTACGGCTCGTATTAATTTGCAATTAGATGTACAATTGCA
ATGATTTTGAACTTTTTGAGTGAAAGAAATTTTATTTTGCTCATCTCCTT
CACAGTCTGATACTAATTCTGCGGGTACTCACATTTGTTACTGTTCACTG
TTCCTCGAGCTTAAATGTTATAACTCTTGGTCTTGAATGGTTACATGATT
TTACACCCAAAAAAAAAAAAAAAAAGGGC
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