EY680036

Overview
NameEY680036
Unique NameEY680036
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length629
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680036 vs. ExPASy Swiss-Prot
Match: CH60_NEIFL (60 kDa chaperonin OS=Neisseria flavescens GN=groL PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.249e-12
Identity = 36/80 (45.00%), Postives = 49/80 (61.25%), Query Frame = 3
Query:    3 SVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 242
            SVV  KVL    + YGY A +G Y D++  G++DP KV R  L+HA+S+A   L +DC++ EI E +PAMP    M   G
Sbjct:  463 SVVVNKVLEGKGN-YGYKAGSGEYGDMIEMGVLDPAKVTRSALQHAASIAGLMLTTDCMIAEIPERKPAMPDMGGMGGMG 541          
BLAST of EY680036 vs. ExPASy Swiss-Prot
Match: CH60_BORA1 (60 kDa chaperonin OS=Bordetella avium (strain 197N) GN=groL PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.249e-12
Identity = 37/72 (51.39%), Postives = 49/72 (68.06%), Query Frame = 3
Query:    3 SVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPA 218
            SVV   VL+   + YGYNAATG Y DL+  G++DPTKV R  L++A+SVA   L ++  VVE+ E +PA PA
Sbjct:  463 SVVVNNVLNGKGN-YGYNAATGEYTDLVEQGVLDPTKVTRTALQNAASVASLLLTAEAAVVELAEDKPAAPA 533          
BLAST of EY680036 vs. ExPASy Swiss-Prot
Match: CH60_AGRT5 (60 kDa chaperonin OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=groL PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.249e-12
Identity = 33/71 (46.48%), Postives = 48/71 (67.61%), Query Frame = 3
Query:    3 SVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMP 215
            S+V  K+L  +   YGYNA TG Y DL+A GI+DP KVVR  L++A+SVA   + ++ ++ E+ + E AMP
Sbjct:  462 SIVVGKILDKNEDNYGYNAQTGEYGDLIALGIVDPVKVVRTALQNAASVASLLITTEAMIAELPKKESAMP 532          
BLAST of EY680036 vs. ExPASy Swiss-Prot
Match: CH602_RHORT (60 kDa chaperonin 2 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=groL2 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.249e-12
Identity = 36/82 (43.90%), Postives = 55/82 (67.07%), Query Frame = 3
Query:    3 SVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 248
            +VV+ K+L + +  +GYNA TG YE+L+ AG+IDPTKVVR  L+ A+S+A   + ++ +V EI E + AMP+ +     G G
Sbjct:  463 AVVAGKLLENSDTDFGYNAQTGIYENLVTAGVIDPTKVVRAALQGAASIAGLLITTEAMVAEIPEKKDAMPSPDMGGMGGMG 544          
BLAST of EY680036 vs. ExPASy Swiss-Prot
Match: CH601_RHIEC (60 kDa chaperonin 1 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=groL1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.249e-12
Identity = 35/74 (47.30%), Postives = 48/74 (64.86%), Query Frame = 3
Query:    3 SVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI-KEPEPAMPAG 221
            S+V  K+L  D   YGYNA TG Y D++  GIIDP KVVR  L+ A+SVA   + ++ ++ E+ K+  PAMP G
Sbjct:  462 SIVVGKILDKDQDNYGYNAQTGEYGDMIGMGIIDPVKVVRTALQDAASVASLLITTEAMIAELPKKDAPAMPGG 535          
BLAST of EY680036 vs. ExPASy Swiss-Prot
Match: CH605_SINMW (60 kDa chaperonin 5 OS=Sinorhizobium medicae (strain WSM419) GN=groL5 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.632e-12
Identity = 35/74 (47.30%), Postives = 49/74 (66.22%), Query Frame = 3
Query:    3 SVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI-KEPEPAMPAG 221
            S+V  K+L  D   +GYNA TG Y D++A GIIDP KVVR  L+ A+SVA   + ++ ++ E+ K+  PAMP G
Sbjct:  462 SIVVGKILEKDTDDFGYNAQTGEYGDMIAMGIIDPVKVVRTALQDAASVASLLITTEAMIAELPKKDAPAMPGG 535          
BLAST of EY680036 vs. ExPASy Swiss-Prot
Match: CH602_BURXL (60 kDa chaperonin 2 OS=Burkholderia xenovorans (strain LB400) GN=groL2 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.632e-12
Identity = 38/75 (50.67%), Postives = 49/75 (65.33%), Query Frame = 3
Query:    3 SVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 227
            SVV  KVLS   + YGYNAATG Y DL+  G++DPTKV R  L++A+S+A   L +D  V E  + E A+PA  P
Sbjct:  463 SVVVAKVLSGKGN-YGYNAATGEYGDLVETGVVDPTKVTRTALQNAASIAGLILTTDATVAEAPKEEKAVPAPAP 536          
BLAST of EY680036 vs. ExPASy Swiss-Prot
Match: CH602_ANASP (60 kDa chaperonin 2 OS=Anabaena sp. (strain PCC 7120) GN=groL2 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.632e-12
Identity = 40/80 (50.00%), Postives = 52/80 (65.00%), Query Frame = 3
Query:    3 SVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 242
            SV+  +V  SD    GYNAATG +EDL+AAGIIDP KVVR  L++A+S+A   L ++ +VVE  E + A PA   M   G
Sbjct:  462 SVIVSRVKDSD-FNIGYNAATGEFEDLIAAGIIDPAKVVRSALQNAASIAGLVLTTEAIVVEKPEKKSAAPADAGMGGMG 540          
BLAST of EY680036 vs. ExPASy Swiss-Prot
Match: CH601_SINMW (60 kDa chaperonin 1 OS=Sinorhizobium medicae (strain WSM419) GN=groL1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.632e-12
Identity = 35/74 (47.30%), Postives = 49/74 (66.22%), Query Frame = 3
Query:    3 SVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI-KEPEPAMPAG 221
            S+V  K+L  D   +GYNA TG Y D++A GIIDP KVVR  L+ A+SVA   + ++ ++ E+ K+  PAMP G
Sbjct:  462 SIVVGKILEKDTDDFGYNAQTGEYGDMIAMGIIDPVKVVRTALQDAASVASLLITTEAMIAELPKKDAPAMPGG 535          
BLAST of EY680036 vs. ExPASy Swiss-Prot
Match: CH60_CLOPH (60 kDa chaperonin OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=groL PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.131e-12
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = 3
Query:   48 GYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNP 227
            G+NA T  Y D++  GI+DP+KV R  L++A+SVA TFL ++  V  IKEP PAMPAG P
Sbjct:  476 GFNALTEKYVDMVEDGILDPSKVTRSALQNATSVASTFLTTEAAVASIKEPAPAMPAGGP 535          
The following BLAST results are available for this feature:
BLAST of EY680036 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 247
Match NameE-valueIdentityDescription
CH60_NEIFL1.249e-1245.0060 kDa chaperonin OS=Neisseria flavescens GN=groL ... [more]
CH60_BORA11.249e-1251.3960 kDa chaperonin OS=Bordetella avium (strain 197N... [more]
CH60_AGRT51.249e-1246.4860 kDa chaperonin OS=Agrobacterium tumefaciens (st... [more]
CH602_RHORT1.249e-1243.9060 kDa chaperonin 2 OS=Rhodospirillum rubrum (stra... [more]
CH601_RHIEC1.249e-1247.3060 kDa chaperonin 1 OS=Rhizobium etli (strain CFN ... [more]
CH605_SINMW1.632e-1247.3060 kDa chaperonin 5 OS=Sinorhizobium medicae (stra... [more]
CH602_BURXL1.632e-1250.6760 kDa chaperonin 2 OS=Burkholderia xenovorans (st... [more]
CH602_ANASP1.632e-1250.0060 kDa chaperonin 2 OS=Anabaena sp. (strain PCC 71... [more]
CH601_SINMW1.632e-1247.3060 kDa chaperonin 1 OS=Sinorhizobium medicae (stra... [more]
CH60_CLOPH2.131e-1255.0060 kDa chaperonin OS=Clostridium phytofermentans (... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-006-G03-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680036 ID=EY680036; Name=EY680036; organism=Citrus sinensis; type=EST; length=629bp
GAAGTGTGGTCAGCGAGAAGGTGCTTTCAAGTGACAATCATAAATATGGA
TACAATGCTGCAACTGGAAACTACGAAGATCTAATGGCTGCAGGAATTAT
TGATCCTACCAAGGTGGTTAGATGTTGCTTGGAGCATGCTTCCTCGGTGG
CAAAAACCTTCTTGATGTCCGACTGTGTGGTGGTTGAGATCAAGGAGCCT
GAACCCGCTATGCCTGCGGGTAACCCTATGGACAACTCAGGATATGGATA
CTAAGCTAATTAACAAGGTCACGGGAGGCAAGCAAATAAGGTTCTGACTT
CGTTATAGCAACTATCTTTCAGTTTGACAGCGTTGGGTTCTCTTCTTCTT
GTAAATTCAATTACTCGACTTAGTAGAGTTTATGGATTCTGGTGAGGATA
GCTTGCCAGAGTACGGCTCGTATTAATTTGCAATTAGATGTACAATTGCA
ATGATTTTGAACTTTTTGAGTGAAAGAAATTTTATTTTGCTCATCTCCTT
CACAGTCTGATACTAATTCTGCGGGTACTCACATTTGTTACTGTTCACTG
TTCCTCGAGCTTAAATGTTATAACTCTTGGTCTTGAATGGTTACATGATT
TTACACCCAAAAAAAAAAAAAAAAAGGGC
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