EY680036

Overview
NameEY680036
Unique NameEY680036
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length629
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680036 vs. ExPASy Swiss-Prot
Match: CH60_CAMFF (60 kDa chaperonin OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=groL PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.131e-12
Identity = 39/79 (49.37%), Postives = 50/79 (63.29%), Query Frame = 3
Query:    6 VVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 242
            VV+  V  +D   YG+NAA+G Y D+  AGIIDP KV R  L++A SVA   L ++  V EIKE +PAMP   PM + G
Sbjct:  461 VVANSVSCADCPNYGFNAASGEYVDMFEAGIIDPVKVERIALQNAVSVASLLLTTEATVSEIKEDKPAMP---PMPDMG 536          
BLAST of EY680036 vs. ExPASy Swiss-Prot
Match: CH60_ARCB4 (60 kDa chaperonin OS=Arcobacter butzleri (strain RM4018) GN=groL PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.131e-12
Identity = 36/79 (45.57%), Postives = 49/79 (62.03%), Query Frame = 3
Query:    6 VVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 242
            VV+ +V  S N   G+NAATG Y D+  AGI+DP KV R  +++A SVA   L ++  V +IKE +PAMP+   M   G
Sbjct:  461 VVANEVEKSSNENLGFNAATGEYVDMFEAGIVDPAKVERVAMQNAVSVASLLLTTEATVSDIKEDKPAMPSMPDMGGMG 539          
BLAST of EY680036 vs. ExPASy Swiss-Prot
Match: CH602_SYNPW (60 kDa chaperonin 2 OS=Synechococcus sp. (strain WH7803) GN=groL2 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.131e-12
Identity = 35/83 (42.17%), Postives = 55/83 (66.27%), Query Frame = 3
Query:    3 SVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYGY 251
            +VV+E V +   ++ GYNAA G+Y D++AAGI+DP KV R  L++A+S+A   L ++C+V ++ E + A PAG  M    + Y
Sbjct:  463 AVVAENVKAKSFNE-GYNAANGDYVDMLAAGIVDPAKVTRSGLQNAASIAGMVLTTECIVADLPEKKEAAPAGGGMGGGDFDY 544          
BLAST of EY680036 vs. ExPASy Swiss-Prot
Match: CH602_CHRVO (60 kDa chaperonin 2 OS=Chromobacterium violaceum GN=groL2 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.131e-12
Identity = 39/82 (47.56%), Postives = 53/82 (64.63%), Query Frame = 3
Query:    3 SVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 248
            SVV  KVL    + +GYNAA+G Y D++  G++DP KV R  L+HA+SVA   L +DC++ E+ E +PA  AG P D  G G
Sbjct:  463 SVVVNKVLEGKGN-FGYNAASGEYGDMLEMGVLDPAKVTRSALQHAASVAGLMLTTDCMIAELPEDKPA--AGMP-DMGGMG 540          
BLAST of EY680036 vs. ExPASy Swiss-Prot
Match: CH602_ANAVT (60 kDa chaperonin 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=groL2 PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.131e-12
Identity = 40/80 (50.00%), Postives = 53/80 (66.25%), Query Frame = 3
Query:    3 SVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 242
            SV+  +V  SD +  GYNAATG +EDL+AAGIIDP KVVR  L++A+S+A   L ++ +VVE  E + A PA   M   G
Sbjct:  462 SVIVSRVKDSDFNT-GYNAATGEFEDLIAAGIIDPAKVVRSALQNAASIAGLVLTTEAIVVEKPEKKAAAPADAGMGGMG 540          
BLAST of EY680036 vs. ExPASy Swiss-Prot
Match: CH60_RALEJ (60 kDa chaperonin OS=Ralstonia eutropha (strain JMP134) GN=groL PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.784e-12
Identity = 38/75 (50.67%), Postives = 49/75 (65.33%), Query Frame = 3
Query:    3 SVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI--KEPEPAMPAG 221
            SVV  KV+    + YGYNAA+G Y DL+  G++DPTKV R  L++A+SVA   L +DC V E   +E  PAMP G
Sbjct:  463 SVVVAKVIEGKGN-YGYNAASGEYGDLVEMGVLDPTKVTRTALQNAASVASLMLTTDCAVAETPKEESAPAMPGG 536          
BLAST of EY680036 vs. ExPASy Swiss-Prot
Match: CH60_NITSB (60 kDa chaperonin OS=Nitratiruptor sp. (strain SB155-2) GN=groL PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.784e-12
Identity = 37/81 (45.68%), Postives = 50/81 (61.73%), Query Frame = 3
Query:    6 VVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 248
            VV+  V +++N   G+NAATG Y D+  AGI+DP KV R  L++A SVA   L ++  V EIKE +PA PA +     G G
Sbjct:  463 VVANNVENAENENTGFNAATGEYVDMFEAGIVDPAKVERVALQNAVSVASLLLTTEATVSEIKEDKPAAPAPDMGGMGGMG 543          
BLAST of EY680036 vs. ExPASy Swiss-Prot
Match: CH60_CUPTR (60 kDa chaperonin OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=groL PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.784e-12
Identity = 38/75 (50.67%), Postives = 49/75 (65.33%), Query Frame = 3
Query:    3 SVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEI--KEPEPAMPAG 221
            SVV  KV+    + YGYNAA+G Y DL+  G++DPTKV R  L++A+SVA   L +DC V E   +E  PAMP G
Sbjct:  463 SVVVAKVIEGKGN-YGYNAASGEYGDLVEMGVLDPTKVTRTALQNAASVASLMLTTDCAVAETPKEESAPAMPGG 536          
BLAST of EY680036 vs. ExPASy Swiss-Prot
Match: CH60_BURP8 (60 kDa chaperonin OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=groL PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.784e-12
Identity = 34/68 (50.00%), Postives = 44/68 (64.71%), Query Frame = 3
Query:   45 YGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 248
            YGYNAATG Y DL+ AG++DPTKV R  L++A+SVA   L +D  V E+ + +  MP G P    G G
Sbjct:  476 YGYNAATGEYGDLVEAGVVDPTKVTRTALQNAASVAGLLLTTDAAVCELPKEDAPMPGGMPGGMGGMG 543          
BLAST of EY680036 vs. ExPASy Swiss-Prot
Match: CH60_BORPD (60 kDa chaperonin OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=groL PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.784e-12
Identity = 36/71 (50.70%), Postives = 48/71 (67.61%), Query Frame = 3
Query:    3 SVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMP 215
            SVV   VL+   + YGYNAATG Y DL+  G++DPTKV R  L++A+SVA   L ++  VVE+ E +PA P
Sbjct:  463 SVVVNNVLNGKGN-YGYNAATGEYTDLVEQGVLDPTKVTRTALQNAASVASLLLTAEAAVVELSEDKPAAP 532          
The following BLAST results are available for this feature:
BLAST of EY680036 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 247
Match NameE-valueIdentityDescription
CH60_CAMFF2.131e-1249.3760 kDa chaperonin OS=Campylobacter fetus subsp. fe... [more]
CH60_ARCB42.131e-1245.5760 kDa chaperonin OS=Arcobacter butzleri (strain R... [more]
CH602_SYNPW2.131e-1242.1760 kDa chaperonin 2 OS=Synechococcus sp. (strain W... [more]
CH602_CHRVO2.131e-1247.5660 kDa chaperonin 2 OS=Chromobacterium violaceum G... [more]
CH602_ANAVT2.131e-1250.0060 kDa chaperonin 2 OS=Anabaena variabilis (strain... [more]
CH60_RALEJ2.784e-1250.6760 kDa chaperonin OS=Ralstonia eutropha (strain JM... [more]
CH60_NITSB2.784e-1245.6860 kDa chaperonin OS=Nitratiruptor sp. (strain SB1... [more]
CH60_CUPTR2.784e-1250.6760 kDa chaperonin OS=Cupriavidus taiwanensis (stra... [more]
CH60_BURP82.784e-1250.0060 kDa chaperonin OS=Burkholderia phymatum (strain... [more]
CH60_BORPD2.784e-1250.7060 kDa chaperonin OS=Bordetella petrii (strain ATC... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-006-G03-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680036 ID=EY680036; Name=EY680036; organism=Citrus sinensis; type=EST; length=629bp
GAAGTGTGGTCAGCGAGAAGGTGCTTTCAAGTGACAATCATAAATATGGA
TACAATGCTGCAACTGGAAACTACGAAGATCTAATGGCTGCAGGAATTAT
TGATCCTACCAAGGTGGTTAGATGTTGCTTGGAGCATGCTTCCTCGGTGG
CAAAAACCTTCTTGATGTCCGACTGTGTGGTGGTTGAGATCAAGGAGCCT
GAACCCGCTATGCCTGCGGGTAACCCTATGGACAACTCAGGATATGGATA
CTAAGCTAATTAACAAGGTCACGGGAGGCAAGCAAATAAGGTTCTGACTT
CGTTATAGCAACTATCTTTCAGTTTGACAGCGTTGGGTTCTCTTCTTCTT
GTAAATTCAATTACTCGACTTAGTAGAGTTTATGGATTCTGGTGAGGATA
GCTTGCCAGAGTACGGCTCGTATTAATTTGCAATTAGATGTACAATTGCA
ATGATTTTGAACTTTTTGAGTGAAAGAAATTTTATTTTGCTCATCTCCTT
CACAGTCTGATACTAATTCTGCGGGTACTCACATTTGTTACTGTTCACTG
TTCCTCGAGCTTAAATGTTATAACTCTTGGTCTTGAATGGTTACATGATT
TTACACCCAAAAAAAAAAAAAAAAAGGGC
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