EY680036

Overview
NameEY680036
Unique NameEY680036
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length629
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680036 vs. ExPASy Swiss-Prot
Match: CH60_BURCE (60 kDa chaperonin OS=Burkholderia cepacia GN=groL PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.635e-12
Identity = 33/68 (48.53%), Postives = 44/68 (64.71%), Query Frame = 3
Query:   45 YGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 248
            YGYNAATG Y D++ AG++DPTKV R  L++A+SVA   L +D  V E+ + +  MP G P    G G
Sbjct:  476 YGYNAATGEYVDMVEAGVVDPTKVTRTALQNAASVAGLLLTTDAAVAELPKEDAPMPGGMPGGMGGMG 543          
BLAST of EY680036 vs. ExPASy Swiss-Prot
Match: CH60_ACIBY (60 kDa chaperonin OS=Acinetobacter baumannii (strain AYE) GN=groL PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.635e-12
Identity = 36/80 (45.00%), Postives = 50/80 (62.50%), Query Frame = 3
Query:    3 SVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 242
            SVV   V + + + +GYNAATG Y D++  GI+DP KV R  LEHA+SVA   L ++C++ +I E +PA P    M   G
Sbjct:  463 SVVINAVKNGEGN-FGYNAATGEYGDMLEMGILDPAKVTRSALEHAASVAGLMLTTECMITDIPEDKPAAPDMGGMGGMG 541          
BLAST of EY680036 vs. ExPASy Swiss-Prot
Match: CH60_ACIBT (60 kDa chaperonin OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=groL PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.635e-12
Identity = 36/80 (45.00%), Postives = 50/80 (62.50%), Query Frame = 3
Query:    3 SVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 242
            SVV   V + + + +GYNAATG Y D++  GI+DP KV R  LEHA+SVA   L ++C++ +I E +PA P    M   G
Sbjct:  463 SVVINAVKNGEGN-FGYNAATGEYGDMLEMGILDPAKVTRSALEHAASVAGLMLTTECMITDIPEDKPAAPDMGGMGGMG 541          
BLAST of EY680036 vs. ExPASy Swiss-Prot
Match: CH60_ACIBC (60 kDa chaperonin OS=Acinetobacter baumannii (strain ACICU) GN=groL PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.635e-12
Identity = 36/80 (45.00%), Postives = 50/80 (62.50%), Query Frame = 3
Query:    3 SVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 242
            SVV   V + + + +GYNAATG Y D++  GI+DP KV R  LEHA+SVA   L ++C++ +I E +PA P    M   G
Sbjct:  463 SVVINAVKNGEGN-FGYNAATGEYGDMLEMGILDPAKVTRSALEHAASVAGLMLTTECMITDIPEDKPAAPDMGGMGGMG 541          
BLAST of EY680036 vs. ExPASy Swiss-Prot
Match: CH60_ACIB5 (60 kDa chaperonin OS=Acinetobacter baumannii (strain AB0057) GN=groL PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.635e-12
Identity = 36/80 (45.00%), Postives = 50/80 (62.50%), Query Frame = 3
Query:    3 SVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 242
            SVV   V + + + +GYNAATG Y D++  GI+DP KV R  LEHA+SVA   L ++C++ +I E +PA P    M   G
Sbjct:  463 SVVINAVKNGEGN-FGYNAATGEYGDMLEMGILDPAKVTRSALEHAASVAGLMLTTECMITDIPEDKPAAPDMGGMGGMG 541          
BLAST of EY680036 vs. ExPASy Swiss-Prot
Match: CH60_ACIB3 (60 kDa chaperonin OS=Acinetobacter baumannii (strain AB307-0294) GN=groL PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.635e-12
Identity = 36/80 (45.00%), Postives = 50/80 (62.50%), Query Frame = 3
Query:    3 SVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 242
            SVV   V + + + +GYNAATG Y D++  GI+DP KV R  LEHA+SVA   L ++C++ +I E +PA P    M   G
Sbjct:  463 SVVINAVKNGEGN-FGYNAATGEYGDMLEMGILDPAKVTRSALEHAASVAGLMLTTECMITDIPEDKPAAPDMGGMGGMG 541          
BLAST of EY680036 vs. ExPASy Swiss-Prot
Match: CH602_MYXXD (60 kDa chaperonin 2 OS=Myxococcus xanthus (strain DK 1622) GN=groL2 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.635e-12
Identity = 38/80 (47.50%), Postives = 51/80 (63.75%), Query Frame = 3
Query:    3 SVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 242
            SVV  KV  S    +G+NAATG YEDL+AAG+IDP KV R  L++A+SV+   L ++ +V E  + E  +PAG  M   G
Sbjct:  461 SVVVNKVKESSG-PFGFNAATGTYEDLLAAGVIDPAKVSRTALQNAASVSSLMLTTEAMVAERPKEEKDLPAGGGMGGMG 539          
BLAST of EY680036 vs. ExPASy Swiss-Prot
Match: CH602_BURS3 (60 kDa chaperonin 2 OS=Burkholderia sp. (strain 383) GN=groL2 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.635e-12
Identity = 33/68 (48.53%), Postives = 44/68 (64.71%), Query Frame = 3
Query:   45 YGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 248
            YGYNAATG Y D++ AG++DPTKV R  L++A+SVA   L +D  V E+ + +  MP G P    G G
Sbjct:  476 YGYNAATGEYVDMVEAGVVDPTKVTRTALQNAASVAGLLLTTDAAVAELPKEDAPMPGGMPGGMGGMG 543          
BLAST of EY680036 vs. ExPASy Swiss-Prot
Match: CH601_NITWN (60 kDa chaperonin 1 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=groL1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.635e-12
Identity = 35/79 (44.30%), Postives = 52/79 (65.82%), Query Frame = 3
Query:    3 SVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVE--IKEPEPAMPAGNPMD 233
            S+V  K+L  + + +G+NAATG Y+DL+  G+IDP KVVR  L+ A+SVA   + ++ +V E   K+  PA+P G  MD
Sbjct:  463 SLVVGKLLEKNTYNWGFNAATGEYQDLVGVGVIDPAKVVRTALQDAASVASLLITTEALVAEKPKKDVAPALPPGGGMD 541          
BLAST of EY680036 vs. ExPASy Swiss-Prot
Match: CH601_BURVG (60 kDa chaperonin 1 OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=groL1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.635e-12
Identity = 33/68 (48.53%), Postives = 44/68 (64.71%), Query Frame = 3
Query:   45 YGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 248
            YGYNAATG Y D++ AG++DPTKV R  L++A+SVA   L +D  V E+ + +  MP G P    G G
Sbjct:  476 YGYNAATGEYVDMVEAGVVDPTKVTRTALQNAASVAGLLLTTDAAVAELPKEDAPMPGGMPGGMGGMG 543          
The following BLAST results are available for this feature:
BLAST of EY680036 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 247
Match NameE-valueIdentityDescription
CH60_BURCE3.635e-1248.5360 kDa chaperonin OS=Burkholderia cepacia GN=groL ... [more]
CH60_ACIBY3.635e-1245.0060 kDa chaperonin OS=Acinetobacter baumannii (stra... [more]
CH60_ACIBT3.635e-1245.0060 kDa chaperonin OS=Acinetobacter baumannii (stra... [more]
CH60_ACIBC3.635e-1245.0060 kDa chaperonin OS=Acinetobacter baumannii (stra... [more]
CH60_ACIB53.635e-1245.0060 kDa chaperonin OS=Acinetobacter baumannii (stra... [more]
CH60_ACIB33.635e-1245.0060 kDa chaperonin OS=Acinetobacter baumannii (stra... [more]
CH602_MYXXD3.635e-1247.5060 kDa chaperonin 2 OS=Myxococcus xanthus (strain ... [more]
CH602_BURS33.635e-1248.5360 kDa chaperonin 2 OS=Burkholderia sp. (strain 38... [more]
CH601_NITWN3.635e-1244.3060 kDa chaperonin 1 OS=Nitrobacter winogradskyi (s... [more]
CH601_BURVG3.635e-1248.5360 kDa chaperonin 1 OS=Burkholderia vietnamiensis ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-006-G03-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680036 ID=EY680036; Name=EY680036; organism=Citrus sinensis; type=EST; length=629bp
GAAGTGTGGTCAGCGAGAAGGTGCTTTCAAGTGACAATCATAAATATGGA
TACAATGCTGCAACTGGAAACTACGAAGATCTAATGGCTGCAGGAATTAT
TGATCCTACCAAGGTGGTTAGATGTTGCTTGGAGCATGCTTCCTCGGTGG
CAAAAACCTTCTTGATGTCCGACTGTGTGGTGGTTGAGATCAAGGAGCCT
GAACCCGCTATGCCTGCGGGTAACCCTATGGACAACTCAGGATATGGATA
CTAAGCTAATTAACAAGGTCACGGGAGGCAAGCAAATAAGGTTCTGACTT
CGTTATAGCAACTATCTTTCAGTTTGACAGCGTTGGGTTCTCTTCTTCTT
GTAAATTCAATTACTCGACTTAGTAGAGTTTATGGATTCTGGTGAGGATA
GCTTGCCAGAGTACGGCTCGTATTAATTTGCAATTAGATGTACAATTGCA
ATGATTTTGAACTTTTTGAGTGAAAGAAATTTTATTTTGCTCATCTCCTT
CACAGTCTGATACTAATTCTGCGGGTACTCACATTTGTTACTGTTCACTG
TTCCTCGAGCTTAAATGTTATAACTCTTGGTCTTGAATGGTTACATGATT
TTACACCCAAAAAAAAAAAAAAAAAGGGC
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