EY680036

Overview
NameEY680036
Unique NameEY680036
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length629
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680036 vs. ExPASy Swiss-Prot
Match: CH60_BORPA (60 kDa chaperonin OS=Bordetella parapertussis GN=groL PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.748e-12
Identity = 38/82 (46.34%), Postives = 50/82 (60.98%), Query Frame = 3
Query:    3 SVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 248
            SVV   VL+   + YGYNAATG Y DL+  G++DPTKV R  L++A+SVA   L ++  VVE+ E +PA     P    G G
Sbjct:  463 SVVVNTVLNGKGN-YGYNAATGEYGDLVEQGVLDPTKVTRTALQNAASVASLLLTAEAAVVELMEDKPAAAPAMPGGMGGMG 543          
BLAST of EY680036 vs. ExPASy Swiss-Prot
Match: CH60_BORBR (60 kDa chaperonin OS=Bordetella bronchiseptica GN=groL PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.748e-12
Identity = 38/82 (46.34%), Postives = 50/82 (60.98%), Query Frame = 3
Query:    3 SVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 248
            SVV   VL+   + YGYNAATG Y DL+  G++DPTKV R  L++A+SVA   L ++  VVE+ E +PA     P    G G
Sbjct:  463 SVVVNTVLNGKGN-YGYNAATGEYGDLVEQGVLDPTKVTRTALQNAASVASLLLTAEAAVVELMEDKPAAAPAMPGGMGGMG 543          
BLAST of EY680036 vs. ExPASy Swiss-Prot
Match: CH60_ACICJ (60 kDa chaperonin OS=Acidiphilium cryptum (strain JF-5) GN=groL PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.748e-12
Identity = 35/82 (42.68%), Postives = 54/82 (65.85%), Query Frame = 3
Query:    3 SVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSGYG 248
            +V+S KVL +D++ +G++A +G ++D++ AGIIDPTKVVR  L+ A+SVA   + ++ +V E   PE   PAG      G G
Sbjct:  463 AVISGKVLDNDDYSFGFDAQSGEFKDMVKAGIIDPTKVVRTALQDAASVAGLLITTEAMVAE--RPEKKAPAGGDAGMGGMG 542          
BLAST of EY680036 vs. ExPASy Swiss-Prot
Match: CH601_AZOSB (60 kDa chaperonin 1 OS=Azoarcus sp. (strain BH72) GN=groL1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.748e-12
Identity = 38/82 (46.34%), Postives = 52/82 (63.41%), Query Frame = 3
Query:    3 SVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPA--MPAGNPMDNSG 242
            SVV  KV+    + +GYNAATG Y D++  G++DPTKV R  L++A+SVA   L +DC+V E+ E +PA  MP    M   G
Sbjct:  463 SVVVNKVVEGSGN-FGYNAATGEYGDMVEMGVLDPTKVTRTALQNAASVASLMLTTDCMVGELAEDKPAGGMPGMGGMGGMG 543          
BLAST of EY680036 vs. ExPASy Swiss-Prot
Match: CH60_WOLSU (60 kDa chaperonin OS=Wolinella succinogenes GN=groL PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.201e-12
Identity = 35/79 (44.30%), Postives = 48/79 (60.76%), Query Frame = 3
Query:    6 VVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPMDNSG 242
            VV+  V  + N  +G+NAA G Y D+ A GIIDP KV R  L++A SV+   L ++  + EIKE +PAMP  + M   G
Sbjct:  462 VVANNVEQNGNENFGFNAANGEYVDMFAEGIIDPLKVARIALQNAVSVSSLLLTTEATISEIKEDKPAMPDMSGMGGMG 540          
BLAST of EY680036 vs. ExPASy Swiss-Prot
Match: CH60_RALSO (60 kDa chaperonin OS=Ralstonia solanacearum GN=groL PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.201e-12
Identity = 36/75 (48.00%), Postives = 50/75 (66.67%), Query Frame = 3
Query:    3 SVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPE--PAMPAG 221
            SVV   V++   + YGYNA+TG Y DL+  G++DPTKV R  L++A+SVA   L +DC V E+ + +  PAMP G
Sbjct:  463 SVVVANVIAGKGN-YGYNASTGEYGDLVEMGVLDPTKVTRTALQNAASVASLMLTTDCAVAELPKDDAAPAMPGG 536          
BLAST of EY680036 vs. ExPASy Swiss-Prot
Match: CH60_FRATW (60 kDa chaperonin OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=groL PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.201e-12
Identity = 35/76 (46.05%), Postives = 50/76 (65.79%), Query Frame = 3
Query:    3 SVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPM 230
            SVV  +V ++  + YGYNAA   Y D++  GI+DPTKV R  L+HA+S+A   + ++ ++ EIKE  PAMP G  M
Sbjct:  463 SVVVNQVKANQGN-YGYNAANDTYGDMVEMGILDPTKVTRSALQHAASIAGLMITTEAMIGEIKEAAPAMPMGGGM 537          
BLAST of EY680036 vs. ExPASy Swiss-Prot
Match: CH60_FRATT (60 kDa chaperonin OS=Francisella tularensis subsp. tularensis GN=groL PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.201e-12
Identity = 35/76 (46.05%), Postives = 50/76 (65.79%), Query Frame = 3
Query:    3 SVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPM 230
            SVV  +V ++  + YGYNAA   Y D++  GI+DPTKV R  L+HA+S+A   + ++ ++ EIKE  PAMP G  M
Sbjct:  463 SVVVNQVKANQGN-YGYNAANDTYGDMVEMGILDPTKVTRSALQHAASIAGLMITTEAMIGEIKEAAPAMPMGGGM 537          
BLAST of EY680036 vs. ExPASy Swiss-Prot
Match: CH60_FRATO (60 kDa chaperonin OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=groL PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.201e-12
Identity = 35/76 (46.05%), Postives = 50/76 (65.79%), Query Frame = 3
Query:    3 SVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPM 230
            SVV  +V ++  + YGYNAA   Y D++  GI+DPTKV R  L+HA+S+A   + ++ ++ EIKE  PAMP G  M
Sbjct:  463 SVVVNQVKANQGN-YGYNAANDTYGDMVEMGILDPTKVTRSALQHAASIAGLMITTEAMIGEIKEAAPAMPMGGGM 537          
BLAST of EY680036 vs. ExPASy Swiss-Prot
Match: CH60_FRATM (60 kDa chaperonin OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=groL PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.201e-12
Identity = 35/76 (46.05%), Postives = 50/76 (65.79%), Query Frame = 3
Query:    3 SVVSEKVLSSDNHKYGYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPAGNPM 230
            SVV  +V ++  + YGYNAA   Y D++  GI+DPTKV R  L+HA+S+A   + ++ ++ EIKE  PAMP G  M
Sbjct:  463 SVVVNQVKANQGN-YGYNAANDTYGDMVEMGILDPTKVTRSALQHAASIAGLMITTEAMIGEIKEAAPAMPMGGGM 537          
The following BLAST results are available for this feature:
BLAST of EY680036 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 247
Match NameE-valueIdentityDescription
CH60_BORPA4.748e-1246.3460 kDa chaperonin OS=Bordetella parapertussis GN=g... [more]
CH60_BORBR4.748e-1246.3460 kDa chaperonin OS=Bordetella bronchiseptica GN=... [more]
CH60_ACICJ4.748e-1242.6860 kDa chaperonin OS=Acidiphilium cryptum (strain ... [more]
CH601_AZOSB4.748e-1246.3460 kDa chaperonin 1 OS=Azoarcus sp. (strain BH72) ... [more]
CH60_WOLSU6.201e-1244.3060 kDa chaperonin OS=Wolinella succinogenes GN=gro... [more]
CH60_RALSO6.201e-1248.0060 kDa chaperonin OS=Ralstonia solanacearum GN=gro... [more]
CH60_FRATW6.201e-1246.0560 kDa chaperonin OS=Francisella tularensis subsp.... [more]
CH60_FRATT6.201e-1246.0560 kDa chaperonin OS=Francisella tularensis subsp.... [more]
CH60_FRATO6.201e-1246.0560 kDa chaperonin OS=Francisella tularensis subsp.... [more]
CH60_FRATM6.201e-1246.0560 kDa chaperonin OS=Francisella tularensis subsp.... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-006-G03-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680036 ID=EY680036; Name=EY680036; organism=Citrus sinensis; type=EST; length=629bp
GAAGTGTGGTCAGCGAGAAGGTGCTTTCAAGTGACAATCATAAATATGGA
TACAATGCTGCAACTGGAAACTACGAAGATCTAATGGCTGCAGGAATTAT
TGATCCTACCAAGGTGGTTAGATGTTGCTTGGAGCATGCTTCCTCGGTGG
CAAAAACCTTCTTGATGTCCGACTGTGTGGTGGTTGAGATCAAGGAGCCT
GAACCCGCTATGCCTGCGGGTAACCCTATGGACAACTCAGGATATGGATA
CTAAGCTAATTAACAAGGTCACGGGAGGCAAGCAAATAAGGTTCTGACTT
CGTTATAGCAACTATCTTTCAGTTTGACAGCGTTGGGTTCTCTTCTTCTT
GTAAATTCAATTACTCGACTTAGTAGAGTTTATGGATTCTGGTGAGGATA
GCTTGCCAGAGTACGGCTCGTATTAATTTGCAATTAGATGTACAATTGCA
ATGATTTTGAACTTTTTGAGTGAAAGAAATTTTATTTTGCTCATCTCCTT
CACAGTCTGATACTAATTCTGCGGGTACTCACATTTGTTACTGTTCACTG
TTCCTCGAGCTTAAATGTTATAACTCTTGGTCTTGAATGGTTACATGATT
TTACACCCAAAAAAAAAAAAAAAAAGGGC
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