EY702437

Overview
NameEY702437
Unique NameEY702437
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length829
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702437 vs. ExPASy Swiss-Prot
Match: TBA2_ORYSJ (Tubulin alpha-2 chain OS=Oryza sativa subsp. japonica GN=TUBA PE=2 SV=1)

HSP 1 Score: 395.971 bits (1016), Expect = 1.379e-109
Identity = 192/200 (96.00%), Postives = 196/200 (98.00%), Query Frame = 1
Query:    1 TASPRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAQ 600
            TAS RFDGALNVDV EFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPP+VVPGGDLAKVQRAVCMISNSTSV EVFSRID KFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG++
Sbjct:  239 TASLRFDGALNVDVNEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTSVVEVFSRIDIKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGSE 438          
BLAST of EY702437 vs. ExPASy Swiss-Prot
Match: TBA_PLAFK (Tubulin alpha chain OS=Plasmodium falciparum (isolate K1 / Thailand) PE=3 SV=1)

HSP 1 Score: 395.586 bits (1015), Expect = 1.801e-109
Identity = 189/201 (94.03%), Postives = 197/201 (98.01%), Query Frame = 1
Query:    1 TASPRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAQS 603
            TAS RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPV+SAEKAYHEQLSV+EITNSAFEP++MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKV RAVCMISNST++AEVFSR+D KFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG +S
Sbjct:  239 TASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVVSAEKAYHEQLSVSEITNSAFEPANMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAEVFSRMDQKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIES 439          
BLAST of EY702437 vs. ExPASy Swiss-Prot
Match: TBA_PLAYO (Tubulin alpha chain OS=Plasmodium yoelii yoelii GN=PY01155 PE=2 SV=2)

HSP 1 Score: 394.43 bits (1012), Expect = 4.013e-109
Identity = 188/201 (93.53%), Postives = 197/201 (98.01%), Query Frame = 1
Query:    1 TASPRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAQS 603
            TAS RFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPV+SAEKAYHEQLSV+EITNSAFEP++MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKV RAVCMISNST++AEVFSR+D KFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG ++
Sbjct:  239 TASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVVSAEKAYHEQLSVSEITNSAFEPANMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAEVFSRMDQKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIET 439          
BLAST of EY702437 vs. ExPASy Swiss-Prot
Match: TBAD_PHYPO (Tubulin alpha-1A chain OS=Physarum polycephalum GN=ALTA PE=1 SV=1)

HSP 1 Score: 394.045 bits (1011), Expect = 5.241e-109
Identity = 186/202 (92.08%), Postives = 197/202 (97.52%), Query Frame = 1
Query:    1 TASPRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAQSA 606
            T S RFDGALNVD+TEFQTNLVPYPRIHFML SYAPVISAEKAYHEQL+VAEITNS FEP++MMAKCDPRHGKYMACCLMYRGDVVPKDVNA+VA IKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCM+SN+T++AEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGA+S+
Sbjct:  239 TTSLRFDGALNVDITEFQTNLVPYPRIHFMLCSYAPVISAEKAYHEQLTVAEITNSVFEPANMMAKCDPRHGKYMACCLMYRGDVVPKDVNASVAVIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESS 440          
BLAST of EY702437 vs. ExPASy Swiss-Prot
Match: TBA2_STYLE (Tubulin alpha-2 chain OS=Stylonychia lemnae PE=3 SV=1)

HSP 1 Score: 393.275 bits (1009), Expect = 8.940e-109
Identity = 192/202 (95.05%), Postives = 197/202 (97.52%), Query Frame = 1
Query:    1 TASPRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAQSA 606
            TAS RFDGALNVDVTEFQTNLVPYPRIHFMLSS APVISAEKAYHEQLSVAEITNSAFEP+SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVP GDLAKV RAVCMISNST++AEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG ++A
Sbjct:  239 TASLRFDGALNVDVTEFQTNLVPYPRIHFMLSS-APVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPSGDLAKVMRAVCMISNSTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIETA 439          
BLAST of EY702437 vs. ExPASy Swiss-Prot
Match: TBA2_CHLRE (Tubulin alpha-2 chain OS=Chlamydomonas reinhardtii GN=TUBA2 PE=1 SV=1)

HSP 1 Score: 392.889 bits (1008), Expect = 1.168e-108
Identity = 186/202 (92.08%), Postives = 197/202 (97.52%), Query Frame = 1
Query:    1 TASPRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAQSA 606
            TAS RFDGALNVD+TEFQTNLVPYPRIHFMLSSYAP+ISAEKAYHEQLSVAEITN+AFEP+SMM KCDP HGKYMACCLMYRGDVVPKDVNA+VATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPG DLAKVQRAVCMISNST++ E+FSR+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKD+EEVGA+SA
Sbjct:  239 TASLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNAAFEPASMMVKCDPLHGKYMACCLMYRGDVVPKDVNASVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGVDLAKVQRAVCMISNSTAIGEIFSRLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDFEEVGAESA 440          
BLAST of EY702437 vs. ExPASy Swiss-Prot
Match: TBA3_ARATH (Tubulin alpha-3/alpha-5 chain OS=Arabidopsis thaliana GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 392.504 bits (1007), Expect = 1.525e-108
Identity = 186/200 (93.00%), Postives = 194/200 (97.00%), Query Frame = 1
Query:    1 TASPRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAQ 600
            T S RFDGA+NVD+TEFQTNLVPYPRIHFMLSSYAPVISA KAYHEQLSV EITN+ FEP+SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAV TIKTKRT+QFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISN+T+VAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGA+
Sbjct:  239 TTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVPEITNAVFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTVQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE 438          
BLAST of EY702437 vs. ExPASy Swiss-Prot
Match: TBA2_PELFA (Tubulin alpha-2 chain OS=Pelvetia fastigiata GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 390.963 bits (1003), Expect = 4.437e-108
Identity = 184/202 (91.09%), Postives = 195/202 (96.53%), Query Frame = 1
Query:    1 TASPRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAQSA 606
            TAS RFDGALNVDVTEFQTNLVPYPRIHFML+SYAP+ISAEKAYHEQLSVAEITNS FEP+ MM  CDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLA+VQRAVCM++N+T++AE  SRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGA++A
Sbjct:  239 TASLRFDGALNVDVTEFQTNLVPYPRIHFMLTSYAPIISAEKAYHEQLSVAEITNSVFEPAGMMTNCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLARVQRAVCMVANTTAIAEALSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAETA 440          
BLAST of EY702437 vs. ExPASy Swiss-Prot
Match: TBA_TETTH (Tubulin alpha chain OS=Tetrahymena thermophila PE=1 SV=1)

HSP 1 Score: 390.193 bits (1001), Expect = 7.569e-108
Identity = 185/202 (91.58%), Postives = 197/202 (97.52%), Query Frame = 1
Query:    1 TASPRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAQSA 606
            TAS RFDGALNVD+TEFQTNLVPYPRIHFMLSSYAP+ISAEKAYHEQLSVAEITNSAFEP++MMAKCDPRHGKYMAC +MYRGDVVPKDVNA++ATIKTKRTIQFVDWCPTGFK GINYQPPTVVPGGDLAKV RAVCMISNST++AEVFSR+DHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG ++A
Sbjct:  239 TASLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPANMMAKCDPRHGKYMACSMMYRGDVVPKDVNASIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVMRAVCMISNSTAIAEVFSRLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIETA 440          
BLAST of EY702437 vs. ExPASy Swiss-Prot
Match: TBA_TRYBR (Tubulin alpha chain OS=Trypanosoma brucei rhodesiense PE=3 SV=1)

HSP 1 Score: 389.808 bits (1000), Expect = 9.885e-108
Identity = 185/202 (91.58%), Postives = 198/202 (98.02%), Query Frame = 1
Query:    1 TASPRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAQSA 606
            TAS RFDGALNVD+TEFQTNLVPYPRIHF+L+SYAPVISAEKAYHEQLSV+EI+N+ FEP+SMM KCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDW PTGFKCGINYQPPTVVPGGDLAKVQRAVCMI+NST++AEVF+RIDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGA+SA
Sbjct:  239 TASLRFDGALNVDLTEFQTNLVPYPRIHFVLTSYAPVISAEKAYHEQLSVSEISNAVFEPASMMTKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWSPTGFKCGINYQPPTVVPGGDLAKVQRAVCMIANSTAIAEVFARIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESA 440          
The following BLAST results are available for this feature:
BLAST of EY702437 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 413
Match NameE-valueIdentityDescription
TBA2_ORYSJ1.379e-10996.00Tubulin alpha-2 chain OS=Oryza sativa subsp. japon... [more]
TBA_PLAFK1.801e-10994.03Tubulin alpha chain OS=Plasmodium falciparum (isol... [more]
TBA_PLAYO4.013e-10993.53Tubulin alpha chain OS=Plasmodium yoelii yoelii GN... [more]
TBAD_PHYPO5.241e-10992.08Tubulin alpha-1A chain OS=Physarum polycephalum GN... [more]
TBA2_STYLE8.940e-10995.05Tubulin alpha-2 chain OS=Stylonychia lemnae PE=3 S... [more]
TBA2_CHLRE1.168e-10892.08Tubulin alpha-2 chain OS=Chlamydomonas reinhardtii... [more]
TBA3_ARATH1.525e-10893.00Tubulin alpha-3/alpha-5 chain OS=Arabidopsis thali... [more]
TBA2_PELFA4.437e-10891.09Tubulin alpha-2 chain OS=Pelvetia fastigiata GN=TU... [more]
TBA_TETTH7.569e-10891.58Tubulin alpha chain OS=Tetrahymena thermophila PE=... [more]
TBA_TRYBR9.885e-10891.58Tubulin alpha chain OS=Trypanosoma brucei rhodesie... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-006-H11-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702437 ID=EY702437; Name=EY702437; organism=Citrus sinensis; type=EST; length=829bp
ACTGCCTCTCCCAGGTTTGATGGTGCTTTGAATGTGGATGTGACTGAATT
CCAAACCAACTTGGTCCCATACCCAAGAATCCACTTCATGCTTTCCTCCT
ATGCACCAGTCATCTCAGCTGAGAAGGCCTACCATGAACAACTCTCAGTT
GCTGAGATCACCAACAGTGCCTTTGAGCCCTCATCTATGATGGCCAAATG
TGATCCTCGTCATGGCAAGTACATGGCTTGCTGCCTTATGTACCGCGGTG
ATGTTGTGCCCAAGGATGTCAATGCAGCTGTTGCTACCATCAAGACCAAG
CGTACAATCCAATTCGTCGACTGGTGCCCGACTGGGTTCAAGTGTGGTAT
CAACTACCAGCCACCAACTGTTGTTCCTGGTGGTGACCTTGCCAAGGTGC
AGAGGGCTGTTTGCATGATCTCCAACTCCACCAGTGTGGCAGAGGTGTTC
TCTCGCATTGACCACAAGTTTGATCTTATGTATGCAAAGCGTGCTTTCGT
CCACTGGTATGTTGGCGAGGGTATGGAAGAAGGAGAGTTCTCTGAGGCTC
GTGAGGATCTTGCTGCCCTTGAGAAGGATTATGAGGAGGTGGGTGCACAG
TCTGCCGACGGTGAGGAAGATTATGGTGAGGAGGACTAACGGATTTAAGT
GTGAAATTATCTGTGCGTTTTAATATGATGTCTTGTGCTTTAGTGATGCT
TCGTGGCTTTATTTTGTGATGAAAACCTTATTCTTGATTCTCCCTCAATT
TTCAAGCTTGTTGAAATTTGCTATGCTTATCAAGTTTCTGGGGTCTATAT
GTNCATGTAAAAAAAAAAAANTACAAAGG
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