EY702394

Overview
NameEY702394
Unique NameEY702394
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702394 vs. ExPASy Swiss-Prot
Match: TCTP_GIBZE (Translationally-controlled tumor protein homolog OS=Gibberella zeae GN=FG02523 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.304e-11
Identity = 41/108 (37.96%), Postives = 59/108 (54.63%), Query Frame = 1
Query:   79 KVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSEERQ--EIFKKNIEGATKF----LLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVK 384
            KV +IV++FRLQ    FDKK ++ Y+K ++K +  KL E     E  K    GA+KF    ++ K  D +F+ GESM  DG +V   Y+E    P  ++    LKE K
Sbjct:   63 KVNNIVNSFRLQST-TFDKKSYLAYLKGYMKAIKAKLQENGSSAEDIKAFETGASKFVKDTIVPKFKDFEFYTGESMDPDGMVVLLNYREDGVTPYTIFWKHGLKETK 169          
BLAST of EY702394 vs. ExPASy Swiss-Prot
Match: TCTP_DEBHA (Translationally-controlled tumor protein homolog OS=Debaryomyces hansenii GN=DEHA2E17468g PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.927e-11
Identity = 43/114 (37.72%), Postives = 60/114 (52.63%), Query Frame = 1
Query:   13 DIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKF---LLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDP 345
            DIGANPS                V ++V +FRLQ Q +FDKK F+TYMK ++K +   L+E+  E  +    GA  +   ++S   D  F+ GESM  DG +V   Y+E  T P
Sbjct:   43 DIGANPSAEEGGEDLEDGTET--VNNVVYSFRLQ-QTSFDKKSFMTYMKGYMKRVKAHLAEKNPEAIEAFENGAKTYFKKVVSSFGDWDFYTGESMDPDGMVVLLNYREDGTTP 153          
BLAST of EY702394 vs. ExPASy Swiss-Prot
Match: TCTP_BOMMO (Translationally-controlled tumor protein homolog OS=Bombyx mori GN=Tctp PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.047e-11
Identity = 41/106 (38.68%), Postives = 58/106 (54.72%), Query Frame = 1
Query:   85 VDIVDTFRLQEQPAF-DKKQFVTYMKRFIKLLTPKLSE---ERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYK--EGATDPTFLYIADALKEVK 384
            VDIV   RL E  AF DKK +  Y+K ++K L  KL E   ++ E+FK N+    K +L +  +LQFF GESM  DG +    Y+  +G   P  ++    L+E K
Sbjct:   66 VDIVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESMDCDGMVAMMEYRDFDGTQIPIMMFFKHGLEEEK 171          
The following BLAST results are available for this feature:
BLAST of EY702394 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
TCTP_GIBZE5.304e-1137.96Translationally-controlled tumor protein homolog O... [more]
TCTP_DEBHA6.927e-1137.72Translationally-controlled tumor protein homolog O... [more]
TCTP_BOMMO9.047e-1138.68Translationally-controlled tumor protein homolog O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-701-006-E04-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702394 ID=EY702394; Name=EY702394; organism=Citrus sinensis; type=EST; length=630bp
CCACGCGTCCGTGACATTGGTGCAAATCCTTCTGCCGAAGGAGCTGATGA
GGATGAGGGTGTTGATGACCAAGCCGTGAAGGTGGTCGACATTGTCGACA
CATTCAGGCTGCAGGAGCAACCTGCTTTTGACAAGAAGCAGTTTGTAACA
TACATGAAGAGATTCATCAAGTTGCTGACGCCCAAGCTGAGTGAGGAGAG
GCAGGAGATATTTAAGAAGAATATTGAGGGAGCGACCAAGTTCTTGCTCT
CGAAGCTCAGTGACCTTCAATTCTTTGTTGGGGAGAGCATGCATGATGAT
GGCTGTCTTGTCTTTGCTTACTACAAGGAAGGTGCGACCGACCCAACATT
TTTGTATATTGCTGATGCATTGAAGGAGGTGAAGTGCTAAGCCGGGCTTC
GAAGAGGAAGTGCCTGCTGTAGTTCTAGTTTTAATTATTGCCCGCGGTTA
TTTTTATGTATCTTTTGTACTGGTTTACTCGGGACTTGTGCTTGCTGTTT
TTTAGTTTTTATTTTGACATAAACAATATGTTTTTCTGCTCCTAATTATT
GGGTTTTATGGTTTGAGATTGAATTACCAAATAACTTAATAGTTTTTGTT
NNNNNNNNNNNNNNNNNAAAAAAAAAAAAA
back to top