EY702296

Overview
NameEY702296
Unique NameEY702296
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length902
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702296 vs. ExPASy Swiss-Prot
Match: ADHB_MYCTU (Alcohol dehydrogenase B OS=Mycobacterium tuberculosis GN=adhB PE=3 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 8.538e-23
Identity = 65/208 (31.25%), Postives = 90/208 (43.27%), Query Frame = 3
Query:  114 KAAVAWGAGQXXXXXXXXXXXXXXXXIRIKVVCTSLCRSD---ITAWETQAIFPRIFGHEASGIVESVGPGITEFNEGDHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXXXWNVADISKGHTVVIFGLGTVGLSVAQSAKVRGA 728
            K A+ W   Q                ++I++    +CRSD   +T     A FP + GHE +GIV  VGPG+ +F  GDHV+  FI  C  C  C++   N C++      G   +D   R   +G+ VY    + +FS Y VVH    VK+    P E                   AD+  G  V I GLG VG++  Q A   GA
Sbjct:    4 KGALIWEFNQPWSVEEIEIGDPRKDEVKIQMEAAGMCRSDHHLVTGDIPMAGFPVLGGHEGAGIVTEVGPGVDDFAPGDHVVLAFIPSCGKCPSCQAGMRNLCDLGAGLLAGESVTDGSFRIQARGQNVYPMTLLGTFSPYMVVHRSSVVKIDPSVPFEVACLVGCGVTTGYGSAVRTADVRPGDDVAIVGLGGVGMAALQGAVSAGA 211          
BLAST of EY702296 vs. ExPASy Swiss-Prot
Match: ADHB_MYCBO (Alcohol dehydrogenase B OS=Mycobacterium bovis GN=adhB PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.538e-23
Identity = 65/208 (31.25%), Postives = 90/208 (43.27%), Query Frame = 3
Query:  114 KAAVAWGAGQXXXXXXXXXXXXXXXXIRIKVVCTSLCRSD---ITAWETQAIFPRIFGHEASGIVESVGPGITEFNEGDHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXXXWNVADISKGHTVVIFGLGTVGLSVAQSAKVRGA 728
            K A+ W   Q                ++I++    +CRSD   +T     A FP + GHE +GIV  VGPG+ +F  GDHV+  FI  C  C  C++   N C++      G   +D   R   +G+ VY    + +FS Y VVH    VK+    P E                   AD+  G  V I GLG VG++  Q A   GA
Sbjct:    4 KGALIWEFNQPWSVEEIEIGDPRKDEVKIQMEAAGMCRSDHHLVTGDIPMAGFPVLGGHEGAGIVTEVGPGVDDFAPGDHVVLAFIPSCGKCPSCQAGMRNLCDLGAGLLAGESVTDGSFRIQARGQNVYPMTLLGTFSPYMVVHRSSVVKIDPSVPFEVACLVGCGVTTGYGSAVRTADVRPGDDVAIVGLGGVGMAALQGAVSAGA 211          
BLAST of EY702296 vs. ExPASy Swiss-Prot
Match: XYLB_PSEPU (Aryl-alcohol dehydrogenase OS=Pseudomonas putida GN=xylB PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.553e-15
Identity = 55/187 (29.41%), Postives = 83/187 (44.39%), Query Frame = 3
Query:  192 IRIKVVCTSLCRSDITAWETQ--AIFPRIFGHEASGIVESVGPGITEFNEGDHVLTVFIGECKTCRQCKSDKSNTC-EVLGLERRGVMHSDQQTRFSIKGKPV-YHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXXXWNVADISKGHTVVIFGLGTVGLSVAQSAKVRGASKII 740
            + +++V T LC +D+   +       P +FGHE +G+VE VG  + +   GDHV+  F   C +C  C S    +C    G    G   + + T    +G  V   +   SSF+ Y + +    VKV+   PLE +               N  +   G  + IFG G VGLS   +A V G + II
Sbjct:   30 VLVRLVATGLCHTDLVCRDQHYPVPLPMVFGHEGAGVVERVGSAVKKVQPGDHVVLTFY-TCGSCDACLSGDPTSCANSFGPNFMGRSVTGECTIHDHQGAEVGASFFGQSSFATYALSYERNTVKVTKDVPLELLGPLGCGIQTGAGSVLNALNPPAGSAIAIFGAGAVGLSAVMAAVVAGCTTII 215          
BLAST of EY702296 vs. ExPASy Swiss-Prot
Match: TERPD_PSESP (Probable alcohol dehydrogenase OS=Pseudomonas sp. GN=terPD PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.252e-14
Identity = 53/181 (29.28%), Postives = 82/181 (45.30%), Query Frame = 3
Query:  219 LCRSDITAWETQAIFP--RIFGHEASGIVESVGPGITEFNEGDHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVY--HYCAVSSFSEYTVVHSGCAVKVSSI---APLEKIXXXXXXXXXXXXXXWNVADISKGHTVVIFGLGTVGLSVAQSAKVRGASKII 740
            +C +D+   +    FP   + GHE SGIVE+VGPG+     GD V+  F   C  C  C+ ++ + C   G +      +D     S +G  V    +   SSFS   +      VK+ ++   AP+E +                  D+  G + ++ G G VGLS   +AK+RG S+II
Sbjct:   17 VCHTDLAIKDGVLPFPLPAVLGHEGSGIVEAVGPGVKHLKPGDAVVMTF-ASCGHCASCEHERPSYCLDFGAQNYSAQRADGPVLLS-QGDEVISGFFFGQSSFSSMAMAREHNLVKIDALVDDAPIELLGPLGCGVQTGAGAVMISLDVRAGRSFLVLGGGAVGLSAVMAAKLRGCSRII 195          
BLAST of EY702296 vs. ExPASy Swiss-Prot
Match: FADH_AMYME (NAD/mycothiol-dependent formaldehyde dehydrogenase OS=Amycolatopsis methanolica PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 7.245e-14
Identity = 51/181 (28.18%), Postives = 82/181 (45.30%), Query Frame = 3
Query:  204 VVCTSLCRSDITAWE--TQAIFPRIFGHEASGIVESVGPGITEFNEGDHVLTVFIGECKTCRQCKSDKSNTCEVLGLERRGVMHSDQQTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVSSIAPLEKIXXXXXXXXXXXXXXWNVADISKGHTVVIFGLGTVGLSVAQSAKVRGASKII 740
            +   ++C +D+T  E      FP + GHEA+G VESVG G+     GD+V+  +   C  CR CK  +   C           ++ Q+   +  G  +     + +F++ T+VH+G   KV   A                    N   +S+G +V + G G VG +V   A++ GA+KII
Sbjct:   35 IATCAVCHTDLTYREGGINDEFPFLLGHEAAGTVESVGEGVDSVQPGDYVVLNWRAVCGQCRACKRGRPQYC-------FSTFNATQKMTLT-DGTELTPALGIGAFADKTLVHAGQCTKVDPAADPAVAGLLGCGVMAGLGAAVNTGAVSRGDSVAVIGCGAVGDAVIAGARLAGANKII 207          
The following BLAST results are available for this feature:
BLAST of EY702296 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 115
Match NameE-valueIdentityDescription
ADHB_MYCTU8.538e-2331.25Alcohol dehydrogenase B OS=Mycobacterium tuberculo... [more]
ADHB_MYCBO8.538e-2331.25Alcohol dehydrogenase B OS=Mycobacterium bovis GN=... [more]
XYLB_PSEPU6.553e-1529.41Aryl-alcohol dehydrogenase OS=Pseudomonas putida G... [more]
TERPD_PSESP3.252e-1429.28Probable alcohol dehydrogenase OS=Pseudomonas sp. ... [more]
FADH_AMYME7.245e-1428.18NAD/mycothiol-dependent formaldehyde dehydrogenase... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-701-005-D05-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702296 ID=EY702296; Name=EY702296; organism=Citrus sinensis; type=EST; length=902bp
CCACGCGTCCGCGCAAACTCATAGCTTCGGCTTCTTCTGGGGTCACATTT
GTCTTCTTCAGATTCTTTCCTAGAATGTCAACTTCCATCAAGCAACCTCA
AGTCATCACTTGCAAAGCTGCGGTTGCATGGGGAGCTGGACAACCGCTGG
TGGTGGAGGAAGTTGAAGTGAACCCGCCGCAGCCGGAGGAGATTAGAATC
AAAGTTGTTTGCACCTCTCTCTGCAGAAGTGATATCACTGCCTGGGAGAC
ACAAGCTATATTTCCTCGAATATTTGGCCATGAAGCATCAGGGATTGTTG
AAAGTGTCGGACCAGGAATCACAGAATTCAACGAGGGGGACCATGTGCTT
ACAGTATTTATTGGAGAATGCAAGACATGCAGACAGTGTAAATCTGATAA
AAGCAACACGTGTGAAGTTCTGGGATTGGAAAGGAGAGGTGTGATGCACA
GTGATCAGCAGACACGCTTCTCAATTAAAGGAAAGCCTGTTTATCACTAT
TGTGCTGTTTCAAGTTTCAGTGAGTATACCGTGGTGCATTCTGGATGTGC
TGTCAAAGTTAGCTCAATTGCACCACTTGAAAAAATATGCCTTCTGAGTT
GTGGACTATCTGCAGGTCTTGGAGCAGCGTGGAATGTGGCAGATATATCG
AAAGGACACACTGTGGTGATTTTTGGTCTTGGAACTGTAGGCCTTTCTGT
TGCACAAAGTGCAAAAGTCAGAGGAGCGTCTAAAATTATTGGGGGTTGAC
ACTAACCCTGAGAAATGTGAAAAAGCCAAACCTGTTGGAAGTACGAAGTT
TCTCACCCAAATGAAAAAAATGACCTTGTGCACAGGGTATTAAGAGAATA
ACGGAGGGAGGGGAAAATAATTCGTTTGAATTTTTGGGGATAAAGAAAGG
AA
back to top