EY702284

Overview
NameEY702284
Unique NameEY702284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702284 vs. ExPASy Swiss-Prot
Match: EFTS_METCA (Elongation factor Ts OS=Methylococcus capsulatus GN=tsf PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.319e-19
Identity = 46/83 (55.42%), Postives = 66/83 (79.52%), Query Frame = 1
Query:  343 VAVSAALVKQLREETGAGMMDCKKALSETGGDLEKAQEYLRKKGLSIADKKSGRLAPEGKIGSYI-PDSRFGVLIEGHCETNF 588
            ++++A +VK+LRE TG+GMM+CKKAL+ETGGDLE A E +RK+GL+ ADKKSGR A EG+I + +  D +   ++E +CET+F
Sbjct:    1 MSITAGMVKELRERTGSGMMECKKALTETGGDLEAAVELMRKQGLAKADKKSGRTAAEGRICARVSEDGKAAAIVEVNCETDF 83          
BLAST of EY702284 vs. ExPASy Swiss-Prot
Match: EFTS_FINM2 (Elongation factor Ts OS=Finegoldia magna (strain ATCC 29328) GN=tsf PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.319e-19
Identity = 53/119 (44.54%), Postives = 82/119 (68.91%), Query Frame = 1
Query:  349 VSAALVKQLREETGAGMMDCKKALSETGGDLEKAQEYLRKKGLSIADKKSGRLAPEGKIGSYIPDSRFGVLIEGHCETNFGG*K*QISRSWVIDLTMQAVGLARKW---DFLPLEKLSR 696
            ++A++VK+LRE+TGAGMMDCKK LSE  G++EKA E LR+KGL+ A+KK+GRLA EG + +YI   +   L+E + ET+F   K +  +++  D+ MQ V    K+   + +P E++ +
Sbjct:    4 ITASMVKELREKTGAGMMDCKKVLSEADGNIEKAVELLREKGLAGAEKKAGRLASEGIVETYIHGGKIASLVEINSETDFVA-KNEEFKNFAKDIAMQVVASNPKYVSREEVPAEEVEK 121          

HSP 2 Score: 83.5741 bits (205), Expect = 1.556e-15
Identity = 41/79 (51.90%), Postives = 54/79 (68.35%), Query Frame = 1
Query:   31 KPEQIRSKIVEGRIRKRLEELALLEQPYIKNDKMVVKDWVKQTIATIGENIKVKRFVRYNLGEGLEKKSQDFAAEVAAQ 267
            K + I  K VEGRI K   ++ LLEQP+IK+    V+  +   IA IGENIK++RF R+ +GEGLEKK++DFA EV  Q
Sbjct:  143 KAKMIAEKKVEGRINKFYSQICLLEQPFIKDPNKTVEQLLTDLIAKIGENIKIRRFARFEVGEGLEKKNEDFAEEVKKQ 221          
BLAST of EY702284 vs. ExPASy Swiss-Prot
Match: EFTS_ANTSP (Elongation factor Ts, chloroplastic (Fragment) OS=Antithamnion sp. GN=tsf PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.319e-19
Identity = 43/81 (53.09%), Postives = 66/81 (81.48%), Query Frame = 1
Query:   19 DLLSKPEQIRSKIVEGRIRKRLEELALLEQPYIKNDKMVVKDWVKQTIATIGENIKVKRFVRYNLGEGLEKKSQDFAAEVA 261
            DLL+KP++I+ KI+ GR+ KRL+EL+L++Q +IK+  + +++ +KQ I+ +GENIK++RF R+ LGEGL K+S DFA EVA
Sbjct:    1 DLLNKPKEIKEKILIGRVEKRLKELSLMDQTFIKDSNLSIEELIKQNISLLGENIKIRRFERFVLGEGLNKRSDDFANEVA 81          
BLAST of EY702284 vs. ExPASy Swiss-Prot
Match: EFTS_CLOPS (Elongation factor Ts OS=Clostridium perfringens (strain SM101 / Type A) GN=tsf PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.029e-19
Identity = 47/81 (58.02%), Postives = 64/81 (79.01%), Query Frame = 1
Query:  349 VSAALVKQLREETGAGMMDCKKALSETGGDLEKAQEYLRKKGLSIADKKSGRLAPEGKIGSYI-PDSRFGVLIEGHCETNF 588
            ++A  VK+LRE TGAGMMDCKKAL+ET GD+EKA E LR+KGL+ A KK+GR+A EG + +Y+  D + G ++E +CET+F
Sbjct:    2 ITAKAVKELRERTGAGMMDCKKALTETNGDMEKAVEVLREKGLAAAAKKAGRVAAEGIVKTYVSEDMKKGSIVEINCETDF 82          
BLAST of EY702284 vs. ExPASy Swiss-Prot
Match: EFTS_CLOPE (Elongation factor Ts OS=Clostridium perfringens GN=tsf PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.029e-19
Identity = 47/81 (58.02%), Postives = 64/81 (79.01%), Query Frame = 1
Query:  349 VSAALVKQLREETGAGMMDCKKALSETGGDLEKAQEYLRKKGLSIADKKSGRLAPEGKIGSYI-PDSRFGVLIEGHCETNF 588
            ++A  VK+LRE TGAGMMDCKKAL+ET GD+EKA E LR+KGL+ A KK+GR+A EG + +Y+  D + G ++E +CET+F
Sbjct:    2 ITAKAVKELRERTGAGMMDCKKALTETNGDMEKAVEVLREKGLAAAAKKAGRVAAEGIVKTYVSEDMKKGSIVEINCETDF 82          
BLAST of EY702284 vs. ExPASy Swiss-Prot
Match: EFTS_CLOP1 (Elongation factor Ts OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=tsf PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.029e-19
Identity = 47/81 (58.02%), Postives = 64/81 (79.01%), Query Frame = 1
Query:  349 VSAALVKQLREETGAGMMDCKKALSETGGDLEKAQEYLRKKGLSIADKKSGRLAPEGKIGSYI-PDSRFGVLIEGHCETNF 588
            ++A  VK+LRE TGAGMMDCKKAL+ET GD+EKA E LR+KGL+ A KK+GR+A EG + +Y+  D + G ++E +CET+F
Sbjct:    2 ITAKAVKELRERTGAGMMDCKKALTETNGDMEKAVEVLREKGLAAAAKKAGRVAAEGIVKTYVSEDMKKGSIVEINCETDF 82          
BLAST of EY702284 vs. ExPASy Swiss-Prot
Match: EFTS_SYNAS (Elongation factor Ts OS=Syntrophus aciditrophicus (strain SB) GN=tsf PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.956e-19
Identity = 46/83 (55.42%), Postives = 64/83 (77.11%), Query Frame = 1
Query:  343 VAVSAALVKQLREETGAGMMDCKKALSETGGDLEKAQEYLRKKGLSIADKKSGRLAPEGKIGSYI-PDSRFGVLIEGHCETNF 588
            + +++A+VK+LR +TGAGMMDCK+AL+ + GD EKA +YLRKKG+S A K+S + A EG I SYI    R GV++E +CET+F
Sbjct:    1 MGITSAMVKELRTKTGAGMMDCKEALTSSNGDFEKAIDYLRKKGMSAATKRSSKAAKEGTIASYIHMGGRIGVMVELNCETDF 83          
BLAST of EY702284 vs. ExPASy Swiss-Prot
Match: EFTS_LAWIP (Elongation factor Ts OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=tsf PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.956e-19
Identity = 51/103 (49.51%), Postives = 72/103 (69.90%), Query Frame = 1
Query:  343 VAVSAALVKQLREETGAGMMDCKKALSETGGDLEKAQEYLRKKGLSIADKKSGRLAPEGKIG-SYIPDSRFGVLIEGHCETNFGG*K*QISRSWVIDLTMQAV 648
            +++SA++VK LRE TGAGMMDCK+AL E  GD+EKA ++LR++GLS A KK+GR   EG IG   +P S   VL+E  CET+F   + ++ + +V D+  Q V
Sbjct:    1 MSISASMVKTLRERTGAGMMDCKQALEEANGDMEKAIDWLRQRGLSKASKKAGRATTEGLIGCQVLPGSTSAVLVEVMCETDFVS-RDEVFKKFVDDIVSQLV 102          
BLAST of EY702284 vs. ExPASy Swiss-Prot
Match: EFTS_GUITH (Elongation factor Ts, chloroplastic OS=Guillardia theta GN=tsf PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.956e-19
Identity = 42/84 (50.00%), Postives = 67/84 (79.76%), Query Frame = 1
Query:    7 VRKEDLLSKPEQIRSKIVEGRIRKRLEELALLEQPYIKNDKMVVKDWVKQTIATIGENIKVKRFVRYNLGEGLEKKSQDFAAEV 258
            + K DL +KP +I+ KIVEGRI+KRL+EL+L++Q YI++  +++++ +K+ IA +GENI+++RF R+ LGEGLEK+  +F  EV
Sbjct:  130 MNKNDLDNKPTEIKEKIVEGRIQKRLKELSLMDQSYIRDSSILIEELIKENIAKLGENIQIRRFERFTLGEGLEKREDNFNEEV 213          

HSP 2 Score: 89.7373 bits (221), Expect = 2.171e-17
Identity = 47/83 (56.63%), Postives = 59/83 (71.08%), Query Frame = 1
Query:  343 VAVSAALVKQLREETGAGMMDCKKALSETGGDLEKAQEYLRKKGLSIADKKSGRLAPEGKIGSYI-PDSRFGVLIEGHCETNF 588
            + +SA  VK+LRE T AGMMDCKKAL E  GD EKA E L++KGL  A KK+ R+A EG I SYI    + G+L+E +CET+F
Sbjct:    3 IEISAKTVKELRERTSAGMMDCKKALQECNGDFEKAVETLKQKGLVSAAKKAARVATEGIIESYIHMGGKLGILVELNCETDF 85          
BLAST of EY702284 vs. ExPASy Swiss-Prot
Match: EFTS_CLOTE (Elongation factor Ts OS=Clostridium tetani GN=tsf PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.956e-19
Identity = 48/81 (59.26%), Postives = 63/81 (77.78%), Query Frame = 1
Query:  349 VSAALVKQLREETGAGMMDCKKALSETGGDLEKAQEYLRKKGLSIADKKSGRLAPEGKIGSYI-PDSRFGVLIEGHCETNF 588
            ++A +VK+LRE TGAGMMDCKKAL+ET GD EKA E LR+KGL+ A KKSGR+A EG + +YI  D +   ++E +CET+F
Sbjct:    2 ITAKMVKELREITGAGMMDCKKALTETNGDTEKAVEVLREKGLAAAAKKSGRIAAEGLVETYIAEDKKNASIVEVNCETDF 82          

HSP 2 Score: 77.0258 bits (188), Expect = 1.456e-13
Identity = 37/79 (46.84%), Postives = 53/79 (67.09%), Query Frame = 1
Query:   31 KPEQIRSKIVEGRIRKRLEELALLEQPYIKNDKMVVKDWVKQTIATIGENIKVKRFVRYNLGEGLEKKSQDFAAEVAAQ 267
            KPE+I  K+VEGRI+K  +E  L+EQ +++N    +  +VK+    +G +IKV  FVR+  GEG+EKK +DFA EV  Q
Sbjct:  224 KPEKIVDKMVEGRIQKYYKENCLVEQVWVRNSDYTIDKYVKEKSKEVGADIKVANFVRFEKGEGIEKKEEDFAEEVKKQ 302          
The following BLAST results are available for this feature:
BLAST of EY702284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTS_METCA2.319e-1955.42Elongation factor Ts OS=Methylococcus capsulatus G... [more]
EFTS_FINM22.319e-1944.54Elongation factor Ts OS=Finegoldia magna (strain A... [more]
EFTS_ANTSP2.319e-1953.09Elongation factor Ts, chloroplastic (Fragment) OS=... [more]
EFTS_CLOPS3.029e-1958.02Elongation factor Ts OS=Clostridium perfringens (s... [more]
EFTS_CLOPE3.029e-1958.02Elongation factor Ts OS=Clostridium perfringens GN... [more]
EFTS_CLOP13.029e-1958.02Elongation factor Ts OS=Clostridium perfringens (s... [more]
EFTS_SYNAS3.956e-1955.42Elongation factor Ts OS=Syntrophus aciditrophicus ... [more]
EFTS_LAWIP3.956e-1949.51Elongation factor Ts OS=Lawsonia intracellularis (... [more]
EFTS_GUITH3.956e-1950.00Elongation factor Ts, chloroplastic OS=Guillardia ... [more]
EFTS_CLOTE3.956e-1959.26Elongation factor Ts OS=Clostridium tetani GN=tsf ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-005-C04-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702284 ID=EY702284; Name=EY702284; organism=Citrus sinensis; type=EST; length=846bp
CCACGCGTCCGGAAGGAAGATCTCTTGTCGAAACCAGAGCAGATCAGGTC
AAAGATTGTTGAAGGGCGGATCAGAAAGAGGCTTGAGGAGTTGGCATTGC
TTGAACAACCATACATTAAGAATGATAAGATGGTGGTAAAGGACTGGGTG
AAGCAAACCATTGCAACCATTGGAGAAAACATAAAAGTCAAAAGGTTTGT
GCGGTACAATCTTGGAGAGGGCTTGGAGAAGAAAAGCCAGGATTTTGCTG
CTGAGGTTGCTGCTCAGACTGCTGCAAAACCAATCGCAAAAGAACAGCCT
GCTCCAGCTGAAACAAAGGAAACTGTAGAGAAACCACCAGCAGTTGCAGT
CTCTGCTGCACTTGTTAAACAACTAAGGGAGGAAACAGGAGCAGGAATGA
TGGACTGCAAGAAAGCTCTCTCTGAAACTGGAGGGGATCTTGAGAAGGCA
CAGGAGTACCTCAGGAAAAAGGGTCTCTCTATTGCTGACAAGAAATCAGG
GCGGCTTGCACCGGAGGGGAAAATTGGGTCATATATTCCTGATTCTCGCT
TCGGAGTACTAATTGAAGGCCATTGTGAGACAAACTTTGGGGGGTAAAAA
TGACAAATTTCCAGGAGCTGGGTTATTGATCTAACAATGCAAGCTGTGGG
TTTGGCCCGGAAGTGGGATTTCTTACCCCTTGAAAAACTTTCCCGGAGGA
GCTTCTTAATTTAACAAACAGGAAACTTCAAATCCACAAGCGGGGGGCCC
TTTTTCCGAAACCTCCAAAAACTTTTGGACGGACATCTCTTGAAGGGAGC
GATCCTCCACACGCGTCTGGGGGGGCTTGCTCCTTTCCCACCCCCC
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