CX077621

Overview
NameCX077621
Unique NameCX077621
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX077621 vs. ExPASy Swiss-Prot
Match: RK2B_SOYBN (50S ribosomal protein L2-B, chloroplastic OS=Glycine max GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 6.911e-39
Identity = 83/94 (88.30%), Postives = 86/94 (91.49%), Query Frame = -3 
Query:    2 NMPLGTSIHNIERRLVKGGQLARAAGAVAKLIAKEGKSATLK*PSGWVRLISKNCSATVG*VGNAGVNQKSLGGAGSKCWLGKRPVVRGVVMNP 283
            +MPLGT+IHNIE  L KGGQLARAAGAVAKLIAKEGKSATLK PSG VRLISKNCSATVG VGN GVNQK+LG AGSKCWLGKRPVVRGVVMNP
Sbjct:  132 DMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKNLGRAGSKCWLGKRPVVRGVVMNP 225
[Close]
BLAST of CX077621 vs. ExPASy Swiss-Prot
Match: RK2B_LIRTU (50S ribosomal protein L2-B, chloroplastic OS=Liriodendron tulipifera GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 6.911e-39
Identity = 83/94 (88.30%), Postives = 86/94 (91.49%), Query Frame = -3 
Query:    2 NMPLGTSIHNIERRLVKGGQLARAAGAVAKLIAKEGKSATLK*PSGWVRLISKNCSATVG*VGNAGVNQKSLGGAGSKCWLGKRPVVRGVVMNP 283
            +MPLGT+IHNIE  L KGGQLARAAGAVAKLIAKEGKSATL+ PSG VRLISKNCSATVG VGN GVNQKSLG AGSKCWLGKRPVVRGVVMNP
Sbjct:  132 DMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLRLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNP 225
[Close]
BLAST of CX077621 vs. ExPASy Swiss-Prot
Match: RK2B_CHLSC (50S ribosomal protein L2-B, chloroplastic OS=Chloranthus spicatus GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 6.911e-39
Identity = 83/94 (88.30%), Postives = 86/94 (91.49%), Query Frame = -3 
Query:    2 NMPLGTSIHNIERRLVKGGQLARAAGAVAKLIAKEGKSATLK*PSGWVRLISKNCSATVG*VGNAGVNQKSLGGAGSKCWLGKRPVVRGVVMNP 283
            +MPLGT+IHNIE  L KGGQLARAAGAVAKLIAKEGKSATL+ PSG VRLISKNCSATVG VGN GVNQKSLG AGSKCWLGKRPVVRGVVMNP
Sbjct:  132 DMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLRLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNP 225
[Close]
BLAST of CX077621 vs. ExPASy Swiss-Prot
Match: RK2A_SOYBN (50S ribosomal protein L2-A, chloroplastic OS=Glycine max GN=rpl2-A PE=3 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 6.911e-39
Identity = 83/94 (88.30%), Postives = 86/94 (91.49%), Query Frame = -3 
Query:    2 NMPLGTSIHNIERRLVKGGQLARAAGAVAKLIAKEGKSATLK*PSGWVRLISKNCSATVG*VGNAGVNQKSLGGAGSKCWLGKRPVVRGVVMNP 283
            +MPLGT+IHNIE  L KGGQLARAAGAVAKLIAKEGKSATLK PSG VRLISKNCSATVG VGN GVNQK+LG AGSKCWLGKRPVVRGVVMNP
Sbjct:  132 DMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKNLGRAGSKCWLGKRPVVRGVVMNP 225
[Close]
BLAST of CX077621 vs. ExPASy Swiss-Prot
Match: RK2_PHAVU (50S ribosomal protein L2, chloroplastic OS=Phaseolus vulgaris GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 9.027e-39
Identity = 82/94 (87.23%), Postives = 86/94 (91.49%), Query Frame = -3 
Query:    2 NMPLGTSIHNIERRLVKGGQLARAAGAVAKLIAKEGKSATLK*PSGWVRLISKNCSATVG*VGNAGVNQKSLGGAGSKCWLGKRPVVRGVVMNP 283
            +MPLGT+IHNIE  L KGGQLARAAGAVAKLIAKEGKSATLK PSG VRLISKNCSATVG VGN GVNQK+LG AGSKCWLGKRP+VRGVVMNP
Sbjct:  132 DMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKNLGRAGSKCWLGKRPIVRGVVMNP 225
[Close]
BLAST of CX077621 vs. ExPASy Swiss-Prot
Match: RK2_PHAAN (50S ribosomal protein L2, chloroplastic OS=Phaseolus angularis GN=rpl2 PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 9.027e-39
Identity = 82/94 (87.23%), Postives = 86/94 (91.49%), Query Frame = -3 
Query:    2 NMPLGTSIHNIERRLVKGGQLARAAGAVAKLIAKEGKSATLK*PSGWVRLISKNCSATVG*VGNAGVNQKSLGGAGSKCWLGKRPVVRGVVMNP 283
            +MPLGT+IHNIE  L KGGQLARAAGAVAKLIAKEGKSATLK PSG VRLISKNCSATVG VGN GVNQK+LG AGSKCWLGKRP+VRGVVMNP
Sbjct:  133 DMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKNLGRAGSKCWLGKRPIVRGVVMNP 226
[Close]
BLAST of CX077621 vs. ExPASy Swiss-Prot
Match: RK2_CITSI (50S ribosomal protein L2, chloroplastic OS=Citrus sinensis GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 9.027e-39
Identity = 83/94 (88.30%), Postives = 85/94 (90.43%), Query Frame = -3 
Query:    2 NMPLGTSIHNIERRLVKGGQLARAAGAVAKLIAKEGKSATLK*PSGWVRLISKNCSATVG*VGNAGVNQKSLGGAGSKCWLGKRPVVRGVVMNP 283
            +MPLGT+IHNIE  L KGGQLARAAGAVAKLIAKEGKSATLK PSG VRLISKNCSATVG VGN G NQKSLG AGSKCWLGKRPVVRGVVMNP
Sbjct:  132 DMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGVVMNP 225
[Close]
BLAST of CX077621 vs. ExPASy Swiss-Prot
Match: RK2_BUXMI (50S ribosomal protein L2, chloroplastic OS=Buxus microphylla GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 9.027e-39
Identity = 83/94 (88.30%), Postives = 85/94 (90.43%), Query Frame = -3 
Query:    2 NMPLGTSIHNIERRLVKGGQLARAAGAVAKLIAKEGKSATLK*PSGWVRLISKNCSATVG*VGNAGVNQKSLGGAGSKCWLGKRPVVRGVVMNP 283
            +MPLGT+IHNIE  L KGGQLARAAGAVAKLIAKEGKSATLK PSG VRLISKNCSATVG VGN G NQKSLG AGSKCWLGKRPVVRGVVMNP
Sbjct:  130 DMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGVVMNP 223
[Close]
BLAST of CX077621 vs. ExPASy Swiss-Prot
Match: RK2_PLAOC (50S ribosomal protein L2, chloroplastic OS=Platanus occidentalis GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.179e-38
Identity = 83/94 (88.30%), Postives = 85/94 (90.43%), Query Frame = -3 
Query:    2 NMPLGTSIHNIERRLVKGGQLARAAGAVAKLIAKEGKSATLK*PSGWVRLISKNCSATVG*VGNAGVNQKSLGGAGSKCWLGKRPVVRGVVMNP 283
            +MPLGT+IHNIE  L KGGQLARAAGAVAKLIAKEGKSATLK PSG VRLISKNCSAT G VGN GVNQKSLG AGSKCWLGKRPVVRGVVMNP
Sbjct:  138 DMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATFGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNP 231
[Close]
BLAST of CX077621 vs. ExPASy Swiss-Prot
Match: RK2_MORIN (50S ribosomal protein L2, chloroplastic OS=Morus indica GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.179e-38
Identity = 83/94 (88.30%), Postives = 85/94 (90.43%), Query Frame = -3 
Query:    2 NMPLGTSIHNIERRLVKGGQLARAAGAVAKLIAKEGKSATLK*PSGWVRLISKNCSATVG*VGNAGVNQKSLGGAGSKCWLGKRPVVRGVVMNP 283
            +MPLGT+IHNIE  L KGGQLARAAGAVAKLIAKEGKSATLK PSG VRLI KNCSATVG VGN GVNQKSLG AGSKCWLGKRPVVRGVVMNP
Sbjct:  132 DMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLIPKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNP 225
The following BLAST results are available for this feature:
BLAST of CX077621 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK2B_SOYBN6.911e-3988.3050S ribosomal protein L2-B, chloroplastic OS=Glyci... [more]
RK2B_LIRTU6.911e-3988.3050S ribosomal protein L2-B, chloroplastic OS=Lirio... [more]
RK2B_CHLSC6.911e-3988.3050S ribosomal protein L2-B, chloroplastic OS=Chlor... [more]
RK2A_SOYBN6.911e-3988.3050S ribosomal protein L2-A, chloroplastic OS=Glyci... [more]
RK2_PHAVU9.027e-3987.2350S ribosomal protein L2, chloroplastic OS=Phaseol... [more]
RK2_PHAAN9.027e-3987.2350S ribosomal protein L2, chloroplastic OS=Phaseol... [more]
RK2_CITSI9.027e-3988.3050S ribosomal protein L2, chloroplastic OS=Citrus ... [more]
RK2_BUXMI9.027e-3988.3050S ribosomal protein L2, chloroplastic OS=Buxus m... [more]
RK2_PLAOC1.179e-3888.3050S ribosomal protein L2, chloroplastic OS=Platanu... [more]
RK2_MORIN1.179e-3888.3050S ribosomal protein L2, chloroplastic OS=Morus i... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_57H04_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-57H04-O8-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077621 ID=CX077621; Name=CX077621; organism=Citrus sinensis; type=EST; length=795bp
CAGGGTTCATAACTACTCCTCTTACTACAGGACGCTTACCTAGCCAACAT
TTAGATCCGGCTCCACCCAAACTTTTCTGGTTCACCCCAGCATTCCCCAC
TTATCCGACTGTTGCTGAGCAGTTTTTGGATATCAAACGGACCCACCCAG
AAGGTCATTTTAATGTGGCCGATTTCCCCTCTTTTGCAATCAGTTTCGCT
ACAGCACCCGCTGCTCTAGCTAATTGTCCACCCTTTACTAGTCTTCTTTC
TATGTTATGTATGGACGTGCCTAAGGGCATATTGGGTGAAGTAGATTCGT
CTTGTCTTTTTGATTGATCAAAAAGATCCTTCACTCCCATTGAGCACAGA
TGTTTCAGTACTCTGTAGCTTGGTCGGCAATGACCAAGCCGCGGAGTTTA
TAAAGCGTCCTCGCGGATACACCCACCCTCTCAGTCAGCCGACAGCCACA
CCAGCATATGAAGCGTAAGTGTGAACGTAGGCCAAGAGCTGTAGAACCCG
AGCGGCCGCCCACAGGTAAACCATACTATGTTCGCCTTCTTCTCGCTTCC
CAAACCTGGATCACTGAAAGGGGCTTGTACTAGTAACCACACCCATGACT
CAGTCAAGTTGTTACCAAACCTCCAAAAGACCCGGAGTGAGAACAACTGG
AAGAGAATCGGTAGCGGCCTGAAGAATAAATTTCTAAAAAAGAAGATGTC
TCGCAAGAGTCGCGTGATGAAAAGTACCATCAGGTAGATGAGACAAAACC
CTCATCGCCCAATCGCGCAAAAGCCTGAGCAAAGATGGCGGAGAT
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