EY702245

Overview
NameEY702245
Unique NameEY702245
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY702245_ssr20 microsatellite EY702245_ssr20:20..29. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY702245 vs. ExPASy Swiss-Prot
Match: IOLC_MYCH2 (5-dehydro-2-deoxygluconokinase OS=Mycoplasma hyopneumoniae (strain 232) GN=iolC PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.766e-15
Identity = 57/214 (26.64%), Postives = 101/214 (47.20%), Query Frame = 1
Query:  103 VSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVARLGGKAAFVGKLGDDEFGHMLAGILKENGVSADGINFDQGARTALAFVTLRADGEREFMFYRNPSADMLLRPDELNLELIRSAKVFHYGSISLIVEPCRSAHLEAMKAAKEAGALLSYDPNLRLPLWPSPGEAR--EQIMS-----IWDKAEVIKAVMWSLIPSPE*QIDDEF 723
            +  G + IDF P     +L  +  F K  GG+ AN+AI ++RL  K  F G + DD+FG+ +  + ++  +    I   +  +  L F  + ++ +   + YR+  AD+ +   +++L+ I   K+      SL   P R A L+A+  AK  G  + +D + R   W +  E     QI++     I    E I+      + +PE  IDD++
Sbjct:    8 ILIGRITIDFNPMDYYNNLENSSLFKKYIGGSAANIAIGLSRLKNKVGFFGSVSDDQFGNFVLNVFEKEKIDISHIKKTKDHKLGLTFTEMLSEEKSTILMYRDNVADLQIDVSDIDLDYILRTKILVISGTSLAKSPSREAVLKALFLAKNNGIKVVFDIDYRPYSWKNLDEVSLYYQIVAQNSDLIIGSYEEIQLTSRFCLENPENLIDDDY 221          
BLAST of EY702245 vs. ExPASy Swiss-Prot
Match: SCRK_RHILT (Fructokinase OS=Rhizobium leguminosarum bv. trifolii GN=frk PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.531e-13
Identity = 60/191 (31.41%), Postives = 92/191 (48.17%), Query Frame = 1
Query:   97 LIVSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVARLGGKAAFVGKLGDDEFGHMLAGILKENGVSADGINFDQGARTALAFVTLRADGEREFMFYRNPSADMLLRPDELNLELIRSAKVFHYGSISLIVEPCRSAHLEAMKAAKEAGALLSYDPNLRLPLWPSPGEAREQIMSIWDKAEVIK 669
            +I+  GE LID +P     +L E  GF    GGA  N AIA+ RLG   AF   + DD  G +L   LK + V            T +AFV L  +G+  + FY   +A  ++   +L  +L    +  H+G+ISLI  PC   + EA+   + A  ++S DPN+R            +I  +  K++++K
Sbjct:    1 MILCCGEALIDMLPR--DTTLGEK-GFAPYAGGAIFNTAIALGRLGIPTAFFTGIADDMMGEILLETLKASNVDYSPCAITPRPST-IAFVKL-VNGQATYAFYDEGTAGRMITTADLP-DLGDDCEALHFGAISLIPSPCGETY-EALLDREAASRVISLDPNIRPGFIKDKPSHMARIKRMAAKSDIVK 184          
BLAST of EY702245 vs. ExPASy Swiss-Prot
Match: KDGK_BACSU (2-dehydro-3-deoxygluconokinase OS=Bacillus subtilis GN=kdgK PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.738e-12
Identity = 54/175 (30.86%), Postives = 80/175 (45.71%), Query Frame = 1
Query:  103 VSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVARLGGKAAFVGKLGDDEFGHMLAGILKENGVSADGINFDQGAR-TALAFVTLRADGEREFMFYRNPSADMLLRPDELNLELIRSAKVFHYGSISLIVEPCRSAHLE-----AMKAAKEAGALLSYDPNLRLPLWP 609
            V+FGE +  F     G  L E   F K   GA +NVA  +ARLG +  ++ K+G+D+ G  +   LK+ GV    +   Q    T L   +   +G+ +  +YR  SA   L   E   +  + A   H   I     P  SA ++      M   + AG  +S+DPN+R  LWP
Sbjct:    6 VTFGESMAMFYANEYG-GLHEVSTFSKGLAGAESNVACGLARLGFRMGWMSKVGNDQLGTFILQELKKEGVDVSRVIRSQDENPTGLLLKSKVKEGDPQVTYYRKNSAASTLTTAEYPRDYFQCAGHLHVTGI----PPALSAEMKDFTYHVMNDMRNAGKTISFDPNVRPSLWP 175          
The following BLAST results are available for this feature:
BLAST of EY702245 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
IOLC_MYCH22.766e-1526.645-dehydro-2-deoxygluconokinase OS=Mycoplasma hyopn... [more]
SCRK_RHILT7.531e-1331.41Fructokinase OS=Rhizobium leguminosarum bv. trifol... [more]
KDGK_BACSU3.738e-1230.862-dehydro-3-deoxygluconokinase OS=Bacillus subtili... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-004-F09-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702245 ID=EY702245; Name=EY702245; organism=Citrus sinensis; type=EST; length=869bp
TATTATTTCTCTCCATAAACTCTCTCTCTATTCATACACAACGTTTCGAT
TTTTGTACAAATGGCTACAACCGGCGCCGTTTCATCCTCCTCAAGCCTGA
TCGTGTCCTTCGGCGAGATGCTCATAGACTTCGTCCCGACGGTCTCCGGC
GTCTCCCTCGCCGAGGCCCCTGGATTCCTCAAGGCCCCCGGCGGCGCCCC
CGCCAACGTCGCCATAGCTGTAGCTCGCCTCGGAGGCAAGGCAGCCTTCG
TCGGCAAGCTCGGCGACGACGAGTTCGGTCACATGCTCGCTGGGATCTTG
AAGGAGAACGGAGTCAGCGCTGACGGCATCAACTTTGACCAGGGTGCCAG
AACTGCCCTTGCATTCGTGACCCTGCGGGCTGACGGCGAGCGCGAGTTCA
TGTTTTACAGAAACCCCAGCGCTGATATGCTCTTGAGACCCGACGAGCTT
AATCTTGAGCTGATCAGATCTGCCAAAGTTTTCCACTATGGATCAATAAG
CCTGATAGTGGAGCCATGCCGATCAGCTCACTTAGAGGCAATGAAAGCAG
CCAAGGAAGCAGGAGCCCTGCTCTCATACGACCCCAACCTCCGGCTACCG
TTGTGGCCCTCGCCGGGAGAAGCGCGTGAGCAGATAATGAGCATCTGGGA
CAAGGCAGAGGTAATCAAGGCAGTGATGTGGAGCTTGATTCCCTCACCGG
AGTGACAGATTGATGATGAATTCACTTGTCGCTCTGGCACCCCACTTGGA
ACTCCTTCTGGGCACCCTTGGTGAGCATGGCTGTAGATACTCACTTAAAA
TTTCCAAGGAACAGGGGATGCTTTTCTGTTGAACCGGTAAAACCACCCGC
CCCCGAGAACATTTTTTGG
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