EY702243

Overview
NameEY702243
Unique NameEY702243
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY702243_ssr354 microsatellite EY702243_ssr354:354..365. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10554 contig Csv1_Contig10554:1..866. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY702243 vs. ExPASy Swiss-Prot
Match: COMT1_EUCGL (Caffeic acid 3-O-methyltransferase (Fragment) OS=Eucalyptus globulus GN=COMT1 PE=3 SV=1)

HSP 1 Score: 50.0618 bits (118), Expect = 1.613e-11
Identity = 50/184 (27.17%), Postives = 83/184 (45.11%), Query Frame = 2
Query:  173 LKGAVELCIADIIH--SHGRPITLSELVSALKIQ-PTKTNNLFRFMRLLVHMGLFSKT--KVGGEKEEEAYGLTAISALLIKDKS-YCLSPLASGILDP*NIFPLHFISKWFKGNDISI-----WETVHGKNYWDYMNQNPGLSQRINQAMISDSEMAIFIVKDCCTKIFEGVGSIVDVGSGNG 691
            L  A+EL + +I+     G  +T  E+ S L  Q P     L R  RLL    + + T   +   K E  YGL  +   L+K++    L+PL   ++D   +F    +  W+   D  +     +   HG   +DY   +P  ++  N+AM   S + +  + +     FEG+ ++VDVG G G
Sbjct:   18 LTAAIELDLLEIMARAGPGAYLTPGEVASQLPTQNPDAPVMLDRIFRLLASYSVLTCTLCDLPEGKVERLYGLAPLCKFLVKNEDGVSLAPLR--LIDQDRVF----LESWYYMKDAILEGGIPFHKAHGMTAFDYPGTDPRFNKIFNRAMSDHSTIMMKKILETYNG-FEGLKTVVDVGGGTG 194          

HSP 2 Score: 40.4318 bits (93), Expect = 1.613e-11
Identity = 17/53 (32.08%), Postives = 27/53 (50.94%), Query Frame = 1
Query:  694 IFQIISVAFPGIKCTILDLPHAVPNMPQTGKLKYIAGDMFAYIPPARPISSRW 852
            I  +I   +P IK    DLPH + + P    ++++ GDMF  IP    +  +W
Sbjct:  196 ILNMIVAKYPSIKGINFDLPHVIEDAPSYPGVEHVGGDMFVNIPNGDAVFMKW 248          
BLAST of EY702243 vs. ExPASy Swiss-Prot
Match: COMT1_PRUDU (Caffeic acid 3-O-methyltransferase OS=Prunus dulcis GN=COMT1 PE=2 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 2.083e-11
Identity = 49/187 (26.20%), Postives = 83/187 (44.39%), Query Frame = 2
Query:  167 MSLKGAVELCIADIIHSHGRPITLSELVSALKIQPTKTNN----LFRFMRLLVHMGL--FSKTKVGGEKEEEAYGLTAISALLIK-DKSYCLSPLASGILDP*NIFPLHFISKWFKGNDISI-----WETVHGKNYWDYMNQNPGLSQRINQAMISDSEMAIFIVKDCCTKIFEGVGSIVDVGSGNG 691
            M LK A+EL + +I+   G  + LS    A ++ PTK  +    L R +RLL    +  +S   +   K E  YGL  +   L K ++   ++PL     D         +  W+   D  +     +   +G   ++Y   +P  ++  N+ M   S + +  + +   K FEG+ S+VDVG G G
Sbjct:   34 MVLKAAIELDLLEIMAKAGPGVFLSPTDIASQL-PTKNPDAPVMLDRMLRLLASYSILTYSLRTLADGKVERLYGLGPVCKFLTKNEEGVSIAPLCLMNQDK------VLLESWYHLKDAVLEGGIPFNKAYGMTAFEYHGTDPRFNKVFNRGMADHSTITMKKILETY-KGFEGLTSVVDVGGGTG 212          

HSP 2 Score: 41.5874 bits (96), Expect = 2.083e-11
Identity = 17/53 (32.08%), Postives = 28/53 (52.83%), Query Frame = 1
Query:  694 IFQIISVAFPGIKCTILDLPHAVPNMPQTGKLKYIAGDMFAYIPPARPISSRW 852
            +  +I   +P IK    DLPH + + PQ   ++++ GDMF  +P    I  +W
Sbjct:  214 VLNMIVSKYPSIKGINFDLPHVIEDAPQYPGVEHVGGDMFVSVPKGDAIFMKW 266          
BLAST of EY702243 vs. ExPASy Swiss-Prot
Match: COMT2_POPTM (Caffeic acid 3-O-methyltransferase 2 OS=Populus tremuloides GN=OMT2 PE=3 SV=1)

HSP 1 Score: 51.2174 bits (121), Expect = 4.557e-11
Identity = 54/199 (27.14%), Postives = 91/199 (45.73%), Query Frame = 2
Query:  137 IRLVFNHLSAMSLKGAVELCIADIIHSHGRPITL--SELVSALKIQPTKTNN----LFRFMRLLVHMGLF--SKTKVGGEKEEEAYGLTAISALLIKDKS-YCLSPLASGILDP*NIFPLHFISKWFKGNDISI-----WETVHGKNYWDYMNQNPGLSQRINQAMISDSEMAIFIVKDCCTKIFEGVGSIVDVGSGNG 691
            ++L+ + +  M LK A+EL + +I+   G    L  S++ S L   PTK  N    L R +RLL    +   S   +   K E  YGL ++   L +++    +SPL     D         +  W+   D  +     +   +G   ++Y   +P  ++  N+ M   S+MA+  + +   K FEG+ S+VDVG G G
Sbjct:   23 LQLISSSVLPMVLKTAIELDLLEIMAKAGPGALLPPSDIASHL---PTKNPNAPVMLDRILRLLASYSILICSLRDLPDGKVERLYGLASVCKFLTRNEDGVSVSPLCLMNQDK------VLMESWYHLKDAILEGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSVHSKMAMKKILETY-KGFEGLASLVDVGGGTG 211          

HSP 2 Score: 37.7354 bits (86), Expect = 4.557e-11
Identity = 15/45 (33.33%), Postives = 24/45 (53.33%), Query Frame = 1
Query:  718 FPGIKCTILDLPHAVPNMPQTGKLKYIAGDMFAYIPPARPISSRW 852
            +P IK    DLPH + + P    ++ + GDMF  +P A  +  +W
Sbjct:  221 YPSIKGINFDLPHVIADAPAFPGVENVGGDMFVSVPKADAVFMKW 265          
BLAST of EY702243 vs. ExPASy Swiss-Prot
Match: COMT3_POPKI (Caffeic acid 3-O-methyltransferase 3 OS=Populus kitakamiensis GN=HOMT3 PE=3 SV=1)

HSP 1 Score: 50.8322 bits (120), Expect = 5.916e-11
Identity = 53/197 (26.90%), Postives = 89/197 (45.18%), Query Frame = 2
Query:  137 IRLVFNHLSAMSLKGAVELCIADIIHSHGRPITLSELVSALKIQPTKTNN----LFRFMRLLVHMGLF--SKTKVGGEKEEEAYGLTAISALLIKDKS-YCLSPLASGILDP*NIFPLHFISKWFKGNDISI-----WETVHGKNYWDYMNQNPGLSQRINQAMISDSEMAIFIVKDCCTKIFEGVGSIVDVGSGNG 691
            ++L+ + +  M LK A+EL + +I+   G    LS    A  + PTK  +    L R +RLL    +   S   +   K E  YGL ++   L K++    +SPL     D         +  W+   D  +     +   +G   ++Y   +P  ++  N+ M   S+MA+  + +   K FEG+ S+VDVG G G
Sbjct:   23 MQLISSSVLPMVLKTAIELDLLEIMAKAGPGALLSPSDIASHL-PTKNPDAPVMLDRILRLLASYSILICSLRDLPDGKVERLYGLASVCKFLTKNEDGVSVSPLCLMNQDK------VLMESWYHLKDAILEGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSKMAMKKILESY-KGFEGLASLVDVGGGTG 211          

HSP 2 Score: 37.7354 bits (86), Expect = 5.916e-11
Identity = 15/45 (33.33%), Postives = 24/45 (53.33%), Query Frame = 1
Query:  718 FPGIKCTILDLPHAVPNMPQTGKLKYIAGDMFAYIPPARPISSRW 852
            +P IK    DLPH + + P    ++ + GDMF  +P A  +  +W
Sbjct:  221 YPSIKGINFDLPHVIADAPAFPGVENVGGDMFVSVPKADAVFMKW 265          
BLAST of EY702243 vs. ExPASy Swiss-Prot
Match: COMT1_ROSCH (Caffeic acid 3-O-methyltransferase OS=Rosa chinensis GN=COMT1 PE=2 SV=1)

HSP 1 Score: 46.9802 bits (110), Expect = 7.676e-11
Identity = 50/185 (27.03%), Postives = 83/185 (44.86%), Query Frame = 2
Query:  167 MSLKGAVELCIADIIHSHGRPITLS--ELVSALKIQ-PTKTNNLFRFMRLLVHMGL--FSKTKVGGEKEEEAYGLTAISALLIKDKSYCLSPLASGILDP*NIFPLHFISKWFKGNDISI-----WETVHGKNYWDYMNQNPGLSQRINQAMISDSEMAIFIVKDCCTKIFEGVGSIVDVGSGNG 691
            M LK A+EL + +I+   G    LS  +L S L  + P     L R +RLL    +  +S   +   K E  YGL  +   L K++   +S  A  +++   +     +  W+   D  +     +   +G   +DY   +P  ++  N+ M   S + +  + +   K FEG+ SIVDVG G G
Sbjct:   34 MVLKAAIELDLLEIMAKAGPGAFLSPNDLASQLPTKNPEAPVMLDRMLRLLASYSILTYSLRTLPDGKVERLYGLGPVCKFLTKNEDG-VSIAALCLMNQDKVL----VESWYHLKDAVLDGGIPFNKAYGMTAFDYHGTDPRFNKVFNKGMADHSTITMKKILETY-KGFEGLTSIVDVGGGTG 212          

HSP 2 Score: 41.2022 bits (95), Expect = 7.676e-11
Identity = 17/53 (32.08%), Postives = 28/53 (52.83%), Query Frame = 1
Query:  694 IFQIISVAFPGIKCTILDLPHAVPNMPQTGKLKYIAGDMFAYIPPARPISSRW 852
            +  +I   +P IK    DLPH + + PQ   ++++ GDMF  +P    I  +W
Sbjct:  214 VVNMIVSKYPSIKGINFDLPHVIEDAPQYPGVQHVGGDMFVSVPKGDAIFMKW 266          
The following BLAST results are available for this feature:
BLAST of EY702243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
COMT1_EUCGL1.613e-1127.17Caffeic acid 3-O-methyltransferase (Fragment) OS=E... [more]
COMT1_PRUDU2.083e-1126.20Caffeic acid 3-O-methyltransferase OS=Prunus dulci... [more]
COMT2_POPTM4.557e-1127.14Caffeic acid 3-O-methyltransferase 2 OS=Populus tr... [more]
COMT3_POPKI5.916e-1126.90Caffeic acid 3-O-methyltransferase 3 OS=Populus ki... [more]
COMT1_ROSCH7.676e-1127.03Caffeic acid 3-O-methyltransferase OS=Rosa chinens... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-004-F07-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702243 ID=EY702243; Name=EY702243; organism=Citrus sinensis; type=EST; length=866bp
CCACGCGTCCGCAATTAGTCTTAGCCATTGAAAACTAAAGGGAGACGTAA
AGGAGAGATCAATTGAAGTCATGGATTCCATTCAAAATGAAGGAGGGATA
AGTGTAAGAGAGCTGTTTGAAGGTCACGGTCAAGTCATTAGGCTTGTATT
TAATCATTTAAGTGCGATGTCACTCAAGGGCGCGGTTGAGCTATGCATAG
CGGACATAATTCACAGCCACGGAAGGCCCATCACTCTCTCTGAGCTAGTC
TCAGCACTTAAAATTCAGCCTACAAAAACTAATAATCTATTCCGTTTCAT
GCGTCTGTTAGTTCACATGGGCTTGTTTTCCAAAACCAAAGTTGGAGGAG
AAAAAGAAGAAGAAGCTTATGGCCTCACAGCTATTTCTGCACTGCTCATC
AAAGACAAGTCCTACTGTTTGTCACCACTTGCTTCAGGAATTCTTGACCC
ATAAAATATCTTTCCACTCCATTTTATAAGTAAATGGTTCAAAGGGAATG
ATATCTCAATATGGGAAACTGTCCACGGAAAGAACTATTGGGATTATATG
AATCAAAACCCTGGATTAAGTCAGCGGATTAATCAAGCAATGATAAGTGA
TTCCGAAATGGCAATCTTTATTGTCAAAGACTGCTGCACGAAAATCTTTG
AAGGGGTGGGCTCCATTGTTGACGTCGGCAGTGGAAATGGTGGATTTTCC
AAATCATATCTGTAGCATTCCCCGGCATCAAATGCACAATACTTGACCTC
CCACATGCTGTCCCTAACATGCCTCAAACTGGGAAATTGAAATACATAGC
AGGGGATATGTTTGCATATATCCCTCCGGCGAGGCCTATTTCTTCCAGGT
GGTTTTCCTGCATTGG
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