EY702238

Overview
NameEY702238
Unique NameEY702238
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length907
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702238 vs. ExPASy Swiss-Prot
Match: LEU3_LEIXX (3-isopropylmalate dehydrogenase OS=Leifsonia xyli subsp. xyli GN=leuB PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.635e-13
Identity = 80/288 (27.78%), Postives = 130/288 (45.14%), Query Frame = 1
Query:   61 ITATLFPGDGIGPE-IAESVKQVFR-TAEVPVEWEEHY--VGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGH-------RSLNLTLRKELNLYANVRPCYSLPGYKTRY---DDVNLITIRENTEGEYSGLEHQVVRG----VVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEIHMRKLXSTIAA*CL*RIPA---LSMCW*CLTSMVTSLVTYVLG*LVDWA*PLVAIMGKEDCPA*TGHGSTPDIAGK 861
            +   + PGDGIGPE IAE+VK +   TA   + +++ Y  +G +    T   LT + L ++R +   L G +    G          R L L LR  L+ Y N+RP    PG  +      +V+ + +RE TEG+Y G    +  G    V   + + T     RV  YAF  A    R++++ +HK N++     L+ +    +A ++PE+ +  L    A   L   PA   + +       ++T L   + G +   A   +  +G+        HGS PDIAG+
Sbjct:    5 VQLVVIPGDGIGPEVIAEAVKALDAVTAGSGLAFQKTYFSLGADRYLATGDVLTDDDLAAIRGHDAILLGAVGGRPGDPRLAGANVERGLLLRLRFSLDHYVNLRPTTLFPGIASPLAAPGEVDFVVVREGTEGQYVGNGGAIRPGTPHEVANEVSVNTAYGVERVVRYAFEQAGQR-RKKLTLVHKTNVLTFAGSLWKRIVDALAAEHPEVAVDYLHVDAATIFLVTDPARFDVIVTDNLFGDILTDLAAAISGGIGLAASGNINPVGEFPSMFEPVHGSAPDIAGE 291          
BLAST of EY702238 vs. ExPASy Swiss-Prot
Match: LEU3_NITWN (3-isopropylmalate dehydrogenase OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=leuB PE=3 SV=1)

HSP 1 Score: 48.1358 bits (113), Expect = 5.006e-13
Identity = 22/48 (45.83%), Postives = 33/48 (68.75%), Query Frame = 3
Query:  663 DNCCMMLVKNPSAFDVLVMPNLYGDIISDLCAGVIGGLGLTPSCNNGE 806
            D+  M LV+ P  FDV+V  NL+GD++SD+ A + G LG+ PS + G+
Sbjct:  226 DSGGMQLVRWPKQFDVIVTDNLFGDMLSDIAAMLTGSLGMLPSASLGD 273          

HSP 2 Score: 47.3654 bits (111), Expect = 5.006e-13
Identity = 56/209 (26.79%), Postives = 92/209 (44.02%), Query Frame = 1
Query:   73 LFPGDGIGPEIAESVKQVFRTAE----VPVEWEEHYV-GTEIDPRTQSFLTWESLESVRRNKV---GLKGPM--ATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTR-------YDDVNLITIRENTEGEYSGLEHQVV------RGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEK 630
            L PGDGIGPE+   VK++    +       E EE  V G   D    S       +++  + V    + GP   + P      +  L LRK+L LYAN+RP    P             + ++++ +RE T G Y G    V       +  V++    T +   R+A  AF  A+   R +++++ K N+M KT  L+ +   +V ++
Sbjct:    8 LLPGDGIGPEVMAEVKRLVGWLDAQGIAKFETEEGLVGGASYDADKVSITDATMAKALAADAVLFGAVGGPKWDSVPYEVRPEAGLLRLRKDLALYANLRPAICYPALAESSSLKPEVVEGLDIMIVRELTGGVYFGEPKTVTDLGNGQKRAVDTQVYDTYEIE-RIARVAFDLARKR-RNKLTSMEKRNVM-KTGVLWHEVVTQVHQR 213          
BLAST of EY702238 vs. ExPASy Swiss-Prot
Match: TTUC4_AGRVI (Probable tartrate dehydrogenase/decarboxylase ttuC' OS=Agrobacterium vitis GN=ttuC' PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.200e-13
Identity = 55/210 (26.19%), Postives = 100/210 (47.62%), Query Frame = 1
Query:   79 PGDGIGPEIAESVKQVF-----RTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSL---NLTLRKELNLYANVRPCYSLPGYKTRY-----DDVNLITIRENTEGEYSGLEHQVVRGVVESL----KIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEIHMRKL 657
            P DGIGPE+  +  QV      R+ +  +  E    G++   +    +  + LE +++      G +  P    H +L    L + +  + YANVRP   LPG           D++ + +REN+EGEYSG   +  +G+ E +     I TR    R+  YAF  A+   R+ ++ + K+N  +    ++ +   EV++++P++   K+
Sbjct:   10 PADGIGPEVIAAGLQVLEALEKRSGDFSIHTETFDWGSDYYKKNGVMMPADGLEQLKKFDAIFFGAVGAPDVPDHITLWGLRLPICQGFDQYANVRPTKVLPGITPPLRNCGPGDLDWVIVRENSEGEYSGHGGRAHKGLPEEVGTEVAIFTRVGVTRIMRYAFKLAQARPRKLLTVVTKSNAQRHGMVMWDEIAAEVSKEFPDVTWDKM 219          
BLAST of EY702238 vs. ExPASy Swiss-Prot
Match: TTUC2_AGRVI (Probable tartrate dehydrogenase/decarboxylase ttuC OS=Agrobacterium vitis GN=ttuC PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.200e-13
Identity = 55/210 (26.19%), Postives = 100/210 (47.62%), Query Frame = 1
Query:   79 PGDGIGPEIAESVKQVF-----RTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSL---NLTLRKELNLYANVRPCYSLPGYKTRY-----DDVNLITIRENTEGEYSGLEHQVVRGVVESL----KIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEIHMRKL 657
            P DGIGPE+  +  QV      R+ +  +  E    G++   +    +  + LE +++      G +  P    H +L    L + +  + YANVRP   LPG           D++ + +REN+EGEYSG   +  +G+ E +     I TR    R+  YAF  A+   R+ ++ + K+N  +    ++ +   EV++++P++   K+
Sbjct:   10 PADGIGPEVIAAGLQVLEALEKRSGDFSIHTETFDWGSDYYKKNGVMMPADGLEQLKKFDAIFFGAVGAPDVPDHITLWGLRLPICQGFDQYANVRPTKVLPGITPPLRNCGPGDLDWVIVRENSEGEYSGHGGRAHKGLPEEVGTEVAIFTRVGVTRIMRYAFKLAQARPRKLLTVVTKSNAQRHGMVMWDEIAAEVSKEFPDVTWDKM 219          
BLAST of EY702238 vs. ExPASy Swiss-Prot
Match: TTUC5_AGRVI (Probable tartrate dehydrogenase/decarboxylase ttuC' OS=Agrobacterium vitis GN=ttuC' PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.097e-13
Identity = 56/210 (26.67%), Postives = 99/210 (47.14%), Query Frame = 1
Query:   79 PGDGIGPEIAESVKQVF-----RTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSL---NLTLRKELNLYANVRPCYSLPGYKTRY-----DDVNLITIRENTEGEYSGLEHQVVRGVVESL----KIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEIHMRKL 657
            P DGIGPE+  +  QV      R+ +  +  E    G++   +    +  + L+ +++      G +  P    H +L    L + +  + YANVRP   LPG           D++ + +REN+EGEYSG   +  RG+ E +     I TR    R+  YAF  A+   R+ ++ + K+N  +    ++ +   EVA ++P++   K+
Sbjct:   10 PADGIGPEVIAAGLQVLEALEQRSGDFKIHTETFDWGSDYYKKHGVMMPADGLDKLKKFDAIFFGAVGAPDVPDHITLWGLRLPICQGFDQYANVRPTKILPGITPPLRNCGPGDLDWVIVRENSEGEYSGHGGRAHRGLPEEVGTEVAIFTRVGVTRIMRYAFKLAQARPRKLLTVVTKSNAQRHGMVMWDEIAAEVATEFPDVTWDKM 219          
BLAST of EY702238 vs. ExPASy Swiss-Prot
Match: TTUC3_AGRVI (Probable tartrate dehydrogenase/decarboxylase ttuC' OS=Agrobacterium vitis GN=ttuC' PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.097e-13
Identity = 56/210 (26.67%), Postives = 99/210 (47.14%), Query Frame = 1
Query:   79 PGDGIGPEIAESVKQVF-----RTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSL---NLTLRKELNLYANVRPCYSLPGYKTRY-----DDVNLITIRENTEGEYSGLEHQVVRGVVESL----KIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEIHMRKL 657
            P DGIGPE+  +  QV      R+ +  +  E    G++   +    +  + L+ +++      G +  P    H +L    L + +  + YANVRP   LPG           D++ + +REN+EGEYSG   +  RG+ E +     I TR    R+  YAF  A+   R+ ++ + K+N  +    ++ +   EVA ++P++   K+
Sbjct:   10 PADGIGPEVIAAGLQVLEALEQRSGDFKIHTETFDWGSDYYKKHGVMMPADGLDKLKKFDAIFFGAVGAPDVPDHITLWGLRLPICQGFDQYANVRPTKILPGITPPLRNCGPGDLDWVIVRENSEGEYSGHGGRAHRGLPEEVGTEVAIFTRVGVTRIMRYAFKLAQARPRKLLTVVTKSNAQRHGMVMWDEIAAEVATEFPDVTWDKM 219          
BLAST of EY702238 vs. ExPASy Swiss-Prot
Match: TTUC1_AGRVI (Probable tartrate dehydrogenase/decarboxylase ttuC OS=Agrobacterium vitis GN=ttuC PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.097e-13
Identity = 56/210 (26.67%), Postives = 99/210 (47.14%), Query Frame = 1
Query:   79 PGDGIGPEIAESVKQVF-----RTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSL---NLTLRKELNLYANVRPCYSLPGYKTRY-----DDVNLITIRENTEGEYSGLEHQVVRGVVESL----KIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEIHMRKL 657
            P DGIGPE+  +  QV      R+ +  +  E    G++   +    +  + L+ +++      G +  P    H +L    L + +  + YANVRP   LPG           D++ + +REN+EGEYSG   +  RG+ E +     I TR    R+  YAF  A+   R+ ++ + K+N  +    ++ +   EVA ++P++   K+
Sbjct:   10 PADGIGPEVIAAGLQVLEALEQRSGDFKIHTETFDWGSDYYKKHGVMMPADGLDKLKKFDAIFFGAVGAPDVPDHITLWGLRLPICQGFDQYANVRPTKILPGITPPLRNCGPGDLDWVIVRENSEGEYSGHGGRAHRGLPEEVGTEVAIFTRVGVTRIMRYAFKLAQARPRKLLTVVTKSNAQRHGMVMWDEIAAEVATEFPDVTWDKM 219          
BLAST of EY702238 vs. ExPASy Swiss-Prot
Match: LEU3_DEHSC (3-isopropylmalate dehydrogenase OS=Dehalococcoides sp. (strain CBDB1) GN=leuB PE=3 SV=1)

HSP 1 Score: 50.0618 bits (118), Expect = 3.120e-12
Identity = 22/58 (37.93%), Postives = 36/58 (62.07%), Query Frame = 3
Query:  624 REVP*DTYEEVXIDNCCMMLVKNPSAFDVLVMPNLYGDIISDLCAGVIGGLGLTPSCN 797
            ++ P    E V +D C M L+  P+ FDV+V  NL+GDI++D  + + G +G+ PS +
Sbjct:  211 KDYPEVKVEHVLVDACAMKLILAPTYFDVIVTENLFGDILTDEASMLAGSMGMLPSAS 268          

HSP 2 Score: 42.743 bits (99), Expect = 3.120e-12
Identity = 51/214 (23.83%), Postives = 88/214 (41.12%), Query Frame = 1
Query:   70 TLFPGDGIGPEIAES----VKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATP------IGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTR-------YDDVNLITIRENTEGEYSGLEHQ------VVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEI 642
            T+ PGDGIGPE+ +     +  V +  +   +++   +G     +    L+  +L   +++   L   +  P      +        L LRK L L+AN+RP    P                + I IRE T G Y     +       +R   +S+     +   R+    F  AK   ++ VS + KAN++  +  L+ +   EVA+ YPE+
Sbjct:    6 TVLPGDGIGPEVMDEGLKVLNAVAKKYKHTFKYQYGLIGGCCIDKEGVALSPAALAMCKKSDAVLLAAVGDPRFDDPKLPVHPEDGLLALRKGLGLFANIRPVKVAPSLVNSTPIKAEIVKGTDFIFIRELTGGVYFAKPKKRWTTPAGIRKATDSMTYSENEIE-RIVRVGFELAKNRKKKLVS-VDKANVL-LSSRLWRQIVIEVAKDYPEV 216          
BLAST of EY702238 vs. ExPASy Swiss-Prot
Match: LEU3_RHILO (3-isopropylmalate dehydrogenase OS=Rhizobium loti GN=leuB PE=3 SV=1)

HSP 1 Score: 46.9802 bits (110), Expect = 3.120e-12
Identity = 23/58 (39.66%), Postives = 36/58 (62.07%), Query Frame = 3
Query:  645 YEEVXIDNCC-----MMLVKNPSAFDVLVMPNLYGDIISDLCAGVIGGLGLTPSCNNG 803
            Y +V +D+       M LV+ P  FDV+V  NL+GD++SD+ A + G +G+ PS + G
Sbjct:  215 YADVKLDHMLADAGGMQLVRWPKQFDVIVTDNLFGDMLSDIAAMLTGSIGMLPSASLG 272          

HSP 2 Score: 45.8246 bits (107), Expect = 3.120e-12
Identity = 48/194 (24.74%), Postives = 84/194 (43.30%), Query Frame = 1
Query:   73 LFPGDGIGPEIAESVKQVFRTAEVPV----EWEEHYVG-TEIDPRTQSFLTWESLESVRRNKV---GLKGPM--ATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTR-------YDDVNLITIRENTEGEYSGLEHQVV-------RGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQ 582
            L PGDGIGPE    VK++       +      +E  VG    D    +    +  +++  + V    + GP   A P      +  L LRK++ L+AN+RP    P             + ++++ +RE T G Y G   Q++       RG+    ++       R++  AF  A+T  +  V+++ K N+M+
Sbjct:    8 LLPGDGIGPEAMAEVKKLISAMNEKLGSGFATDEGLVGGCAYDAHGAAISDADMAKAMAADAVLFGAVGGPKWDAVPYEVRPEAGLLRLRKDMELFANLRPAICYPALAASSSLKQEVVEGLDILIVRELTGGVYFGEPKQIIDLGNGQKRGI--DTQVYDTFEIERISGVAFELARTR-KNHVTSMEKRNVMK 198          
BLAST of EY702238 vs. ExPASy Swiss-Prot
Match: LEU3_BACCZ (3-isopropylmalate dehydrogenase OS=Bacillus cereus (strain ZK / E33L) GN=leuB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.249e-12
Identity = 80/282 (28.37%), Postives = 120/282 (42.55%), Query Frame = 1
Query:   82 GDGIGPEIAESVKQVFRTAEVPVE-----WEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLN----LTLRKELNLYANVRP-------CYSLPGYKTRYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEIHMRKLXSTIAA*CL*RIP------ALSMCW*CLTSMVTSLVTYVLG*LVDWA*PLVAIMGKEDCPA*TGHGSTPDIAGK 861
            GDG+GPE+ ES K+V    E          +EH+ G  ID   Q  L   +L +   +   L G +  P   G +       L LRK L ++ANVRP        +  P  K   D+++ + +RE T G Y     +    V        R    R+  YAF  A    +++V++I KAN+++ +  L+     EVA +YP++ +  +    AA  L R P           +  + S   S++   LG L     P  +   K        HGS PDIAGK
Sbjct:   10 GDGVGPEVMESAKEVLHMVERLYGHHFHLQDEHFGGVAIDLTGQP-LPQRTLAACLASDAVLLGAVGGPRWDGAKERPEKGLLALRKGLGVFANVRPVTVESETAHLSPLKKA--DEIDFVVVRELTGGIYFSYPKERTDEVATDTLTYHRHEIERIVSYAFQLASKR-KKKVTSIDKANVLESSK-LWRTVTEEVALRYPDVELEHILVDAAAMELIRNPGRFDVIVTENLFGDILSDEASVLAGSLGML-----PSASHAEKGPSLYEPIHGSAPDIAGK 281          
The following BLAST results are available for this feature:
BLAST of EY702238 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
LEU3_LEIXX3.635e-1327.783-isopropylmalate dehydrogenase OS=Leifsonia xyli ... [more]
LEU3_NITWN5.006e-1345.833-isopropylmalate dehydrogenase OS=Nitrobacter win... [more]
TTUC4_AGRVI6.200e-1326.19Probable tartrate dehydrogenase/decarboxylase ttuC... [more]
TTUC2_AGRVI6.200e-1326.19Probable tartrate dehydrogenase/decarboxylase ttuC... [more]
TTUC5_AGRVI8.097e-1326.67Probable tartrate dehydrogenase/decarboxylase ttuC... [more]
TTUC3_AGRVI8.097e-1326.67Probable tartrate dehydrogenase/decarboxylase ttuC... [more]
TTUC1_AGRVI8.097e-1326.67Probable tartrate dehydrogenase/decarboxylase ttuC... [more]
LEU3_DEHSC3.120e-1237.933-isopropylmalate dehydrogenase OS=Dehalococcoides... [more]
LEU3_RHILO3.120e-1239.663-isopropylmalate dehydrogenase OS=Rhizobium loti ... [more]
LEU3_BACCZ5.249e-1228.373-isopropylmalate dehydrogenase OS=Bacillus cereus... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-004-F02-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702238 ID=EY702238; Name=EY702238; organism=Citrus sinensis; type=EST; length=907bp
TCCGACCCACGCGTCCGGCTTTGCCTATTGCCACGGGCCTTCTCCTCCGA
TATTACTCCGATCACCGCCACTCTCTTTCCCGGCGACGGAATCGGCCCCG
AGATCGCCGAGTCCGTTAAACAGGTATTTAGGACAGCTGAGGTGCCAGTT
GAATGGGAGGAGCATTATGTGGGGACTGAAATAGATCCTAGAACACAAAG
TTTTCTGACATGGGAAAGTTTAGAATCTGTGAGAAGGAACAAGGTGGGCT
TGAAAGGGCCTATGGCAACACCAATTGGAAAGGGTCATCGTTCATTGAAT
CTTACTTTGAGGAAAGAACTTAATTTGTATGCCAATGTTAGGCCTTGCTA
CAGCCTCCCTGGATATAAAACTCGCTATGATGATGTGAATCTTATCACTA
TCCGTGAGAACACAGAAGGAGAGTACAGTGGACTTGAACATCAAGTGGTG
AGAGGTGTGGTTGAAAGTCTCAAAATCATTACTCGTCAGGCTAGTTTGAG
AGTTGCTGAATATGCGTTTCACTATGCGAAGACACATGGAAGAGAAAGAG
TATCTGCAATACACAAAGCAAATATTATGCAGAAAACTGATGGGCTTTTT
TTGAAGTGTTGTCGTGAGGTTGCCGAGAAGTACCCTGAGATACATATGAG
GAAGTTGNTATCGACAATTGCTGCATGATGCTTGTGAAGAATCCCAGCGC
TTTCGATGTGTTGGTAATGCCTAACCTCTATGGTGACATCATTAGTGACC
TATGTGCTGGGGTGATTGGTGGATTGGGCTTAACCCCTAGTTGCAATAAT
GGGGAAGGAGGATTGCCCTGCTTGAACTGGTCATGGTTCCACACCTGATA
TTGCTGGAAAATTTGGCAAATCCACTGCTTTGCTGTGAATTCGGGAACAT
GGTGCGC
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