EY702238

Overview
NameEY702238
Unique NameEY702238
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length907
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8225 contig Csv1_Contig8225:183..1090. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY702238 vs. ExPASy Swiss-Prot
Match: LEU3_BACCO (3-isopropylmalate dehydrogenase OS=Bacillus coagulans GN=leuB PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.249e-12
Identity = 83/298 (27.85%), Postives = 139/298 (46.64%), Query Frame = 1
Query:   73 LFPGDGIGPEIAESVKQVFRTA----EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATP-IGKGHRSLN-----LTLRKELNLYANVRPCYSL-------PGYKTRYDDVNLITIRENTEGEYSGLEHQVVRG-----VVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEIHMRKLXSTIAA*CL*RIP------ALSMCW*CLTSMVTSLVTYVLG*LVDWA*PLVAIMGKEDCPA*TGHGSTPDIAGKFGKSTAL 882
            + PGDGIGPE+ ++  +V +T          +E   +G        + L  E+L+  RR+   L G +  P       SL      L LRKE+ L+AN+RP  +        P  + R ++V+L+ +RE T G Y G   +  RG     VV++L   TR+   R+ E AF  A+   R++++++ KAN+++ +  ++ +   E A+KYP++ +  +     +  L   P           +  + S   S++T  LG L     P  ++           HGS PDIAG+ GK+  L
Sbjct:    7 VLPGDGIGPEVMDAAIRVLKTVLDNDGHEAVFENALIGGAAIDEAGTPLPEETLDICRRSDAILLGAVGGPKWDHNPASLRPEKGLLGLRKEMGLFANLRPVKAYATLLNASPLKRERVENVDLVIVRELTGGLYFGRPSE-RRGPGENEVVDTL-AYTREEIERIIEKAFQLAQIR-RKKLASVDKANVLE-SSRMWREIAEETAKKYPDVELSHMLVDSTSMQLIANPGQFDVIVTENMFGDILSDEASVITGSLGML-----PSASLRSDRFGMYEPVHGSAPDIAGQ-GKANPL 294          
BLAST of EY702238 vs. ExPASy Swiss-Prot
Match: LEU3_PHACH (3-isopropylmalate dehydrogenase OS=Phanerochaete chrysosporium GN=LEU2 PE=2 SV=1)

HSP 1 Score: 47.7506 bits (112), Expect = 9.683e-12
Identity = 56/216 (25.93%), Postives = 90/216 (41.67%), Query Frame = 1
Query:   73 LFPGDGIGPEIAESVKQVFR-----TAEVPVEWEEH-YVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLN-----LTLRKELNLYANVRPCYSLPGYKTRYD--------DVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASL----RVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCRE-VAEKYPEIHM 648
            + PGDGIGPE+     +V       +++V ++ E H + G  ID   +  LT  +LE+ +     L G +  P    +  +      L LRK L LYAN+RP          Y          V++I IRE   G Y G   ++     E     T   S+    R+       A       V +I KAN++  +  L+ K   E +  ++P++ +
Sbjct:   10 ILPGDGIGPEVVAEATRVLEVVSASSSDVEIKLETHDFGGCSIDKHGEP-LTAATLEACKLADAILLGAIGGPKWGVNSKVRPEQALLALRKALGLYANIRPANFASDSLLAYSPLKPSVARGVDIIVIRELIGGAYFGERKELGARAQEDAAWDTMIYSVPEVQRITRSRRQVASPDPPLPVHSIDKANVL-ASSRLWRKVATETIQNEFPQLKL 223          

HSP 2 Score: 40.4318 bits (93), Expect = 9.683e-12
Identity = 19/47 (40.43%), Postives = 31/47 (65.96%), Query Frame = 3
Query:  660 IDNCCMMLVKNPSAFD-VLVMPNLYGDIISDLCAGVIGGLGLTPSCN 797
            +D+  M++V NP   + V++  NL+GDI+SD  + + G LGL PS +
Sbjct:  228 VDSASMLIVANPKKLNGVILTENLFGDILSDESSVIPGSLGLLPSAS 274          

HSP 3 Score: 22.3274 bits (46), Expect = 9.683e-12
Identity = 8/10 (80.00%), Postives = 9/10 (90.00%), Query Frame = 1
Query:  832 HGSTPDIAGK 861
            HGS PDIAG+
Sbjct:  299 HGSAPDIAGQ 308          
BLAST of EY702238 vs. ExPASy Swiss-Prot
Match: LEU3_ZYGBA (3-isopropylmalate dehydrogenase OS=Zygosaccharomyces bailii GN=LEU2 PE=3 SV=1)

HSP 1 Score: 46.595 bits (109), Expect = 1.941e-11
Identity = 58/214 (27.10%), Postives = 98/214 (45.79%), Query Frame = 1
Query:   73 LFPGDGIGPEIA-ESVKQVFRTAEVPVE----WEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPI-GKG----HRSLNLTLRKELNLYANVRPC-------YSLPGYKTRY-DDVNLITIRENTEGEYSG-LEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRE-RVSAIHKANIMQKTDGLFLKCCRE-VAEKYPEIHMR 651
            + PGD +G EIA E++K +   +EV  +    ++ H +G      T S L  E+L + ++    L G +  P  G G     + L L +RKEL LYAN+RPC         L   K ++    + I +RE   G Y G  +     GV    +  T+    R+   A   A  H     + ++ KAN++  +  L+ K   E +  ++P++ ++
Sbjct:    7 VLPGDHVGQEIAQEAIKVLEAISEVSPKAKFNFQHHLIGGSAIDATGSPLPDEALAAAKKADAVLLGAVGGPKWGTGAVRPEQGL-LKIRKELQLYANLRPCNFASESLLELSPLKPQHARGTDFIVVRELVGGIYFGQRKEDDGDGVAWDSERYTKPEVQRITRMAAFLALQHNPPLPIWSLDKANVL-ASSRLWRKTVEETIKNEFPQLTVK 218          

HSP 2 Score: 43.5134 bits (101), Expect = 1.941e-11
Identity = 22/58 (37.93%), Postives = 36/58 (62.07%), Query Frame = 3
Query:  627 EVP*DTYEEVXIDNCCMMLVKNPSAFD-VLVMPNLYGDIISDLCAGVIGGLGLTPSCN 797
            E P  T +   ID+  M+L+KNP+  + +++  N++ DIISD  + + G LGL PS +
Sbjct:  211 EFPQLTVKHQLIDSAAMILIKNPTQLNGIIITSNMFEDIISDEASVIPGSLGLLPSAS 268          
BLAST of EY702238 vs. ExPASy Swiss-Prot
Match: LEU3_BACHK (3-isopropylmalate dehydrogenase OS=Bacillus thuringiensis subsp. konkukian GN=leuB PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.994e-11
Identity = 79/280 (28.21%), Postives = 120/280 (42.86%), Query Frame = 1
Query:   82 GDGIGPEIAESVKQVFRTAEVPVE-----WEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLN----LTLRKELNLYANVRP--CYSLPGYKT---RYDDVNLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEIHMRKLXSTIAA*CL*RIP------ALSMCW*CLTSMVTSLVTYVLG*LVDWA*PLVAIMGKEDCPA*TGHGSTPDIAGK 861
            GDG+GPE+ ES K V    E          +EH+ G  ID   Q  L   +L +   +   L G +  P   G +       L LRK L ++ANVRP    S   + +   + D+++ + +RE T G Y     +    V        R    R+  YAF  A    +++V++I KAN+++ +  L+     EVA +YP++ +  +    AA  L R P           +  + S   S++   LG L     P  +   K        HGS PDIAGK
Sbjct:   10 GDGVGPEVMESAKGVLHMVERLYGHHFHLQDEHFGGVAIDLTGQP-LPQRTLAACLASDAVLLGAVGGPRWDGAKERPEKGLLALRKGLGVFANVRPVTVESATAHLSPLKKADEIDFVVVRELTGGIYFSYPKKRTDEVATDTLTYHRHEIERIVSYAFQLASKR-KKKVTSIDKANVLESSK-LWRTVTEEVALRYPDVELEHILVDAAAMELIRNPGRFDVIVTENLFGDILSDEASVLAGSLGML-----PSASHAEKGPSLYEPIHGSAPDIAGK 281          
BLAST of EY702238 vs. ExPASy Swiss-Prot
Match: LEU3_AQUAE (3-isopropylmalate dehydrogenase OS=Aquifex aeolicus GN=leuB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.605e-11
Identity = 81/291 (27.84%), Postives = 122/291 (41.92%), Query Frame = 1
Query:   82 GDGIGPEIAESVKQVF----RTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMA------TPIGKGHRSLNLTLRKELNLYANVRPC-------YSLPGYKTRYDDVNLITIRENTEGEYSG-----LEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEIHMRKLXSTIAA*CL*RIPALSMCW*CLTSMVTSLVTYVLG*LV-DWA*PLVAIMGKEDCPA*TG--------HGSTPDIAGK 861
            GDGIGPEI E   +V         V  E+ E  +G E   +T   L  E+L+  + +   L G +        P  K      L +RKEL+LYAN+RP         S P  +      ++I IRE T G Y G      E    R  + ++K  T     R+    F  A+   R++++++ KAN+++    L+ +   E  E YP++ +  L     A  L R P         TS    +   + G ++ D A  +V  +G     +           HGS PDIAGK
Sbjct:   11 GDGIGPEIVEQALRVLDKIGEIYGVEFEYREGLIGGEAIDKTGDPLPEETLKICKESDAILLGAVGGPKWDNLPTDKRPEKGLLRIRKELDLYANLRPAKVWDALISSSPLKEEVVKGTDMIVIRELTSGIYYGEPRGIFEENGKRYAINTMK-YTEDEIRRIVRKGFEIARKR-RKKLTSVDKANVLE-VSALWRQIVEEEKENYPDVELEHLYIDNCAMQLVRRP---------TSFDVIVTGNIFGDILSDEAGVVVGSLGMLPSASIGDRYALYEPVHGSAPDIAGK 289          
BLAST of EY702238 vs. ExPASy Swiss-Prot
Match: LEU3_CANRU (3-isopropylmalate dehydrogenase OS=Candida rugosa GN=LEU2 PE=3 SV=1)

HSP 1 Score: 46.9802 bits (110), Expect = 3.272e-11
Identity = 51/209 (24.40%), Postives = 83/209 (39.71%), Query Frame = 1
Query:   73 LFPGDGIGPEIAESVKQVFRTAE-----VPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPI-GKGHRSLN---LTLRKELNLYANVRPCYSL--------PGYKTRYDDVNLITIRENTEGEYSG-LEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHG-RERVSAIHKANIMQKTDGLFLKCCREVAEKYPEI 642
            L PGD +G E+     +V +  E         +  H +G      T   L  E+LE+ + +   L G +  P  G G        L +RKEL LYAN+RPC           P  +   +  + + +RE   G Y G  +     GV    +  +     R+   A   A  H   + V ++ KAN++  +        R + E++P +
Sbjct:    7 LLPGDHVGTEVVAEAVKVLKAIERTTPGTSFSFSTHLIGGAAIDATGVPLPDEALEAAKASDAVLLGAVGGPKWGTGDVRPEQGLLKIRKELGLYANLRPCSFASSKLVDLSPLKREIVEGTDFVVVRELVGGIYFGERKEDDGSGVASDTETYSVPEVERITRMAAFLALQHNPPQTVWSLDKANVLASSRLWRKTVTRVMTEEFPTV 215          

HSP 2 Score: 42.3578 bits (98), Expect = 3.272e-11
Identity = 22/58 (37.93%), Postives = 36/58 (62.07%), Query Frame = 3
Query:  627 EVP*DTYEEVXIDNCCMMLVKNPSAFD-VLVMPNLYGDIISDLCAGVIGGLGLTPSCN 797
            E P   ++   ID+  M+LV+ P+  + V++  N++GDIISD  + + G LGL PS +
Sbjct:  211 EFPTVPFQHQLIDSAAMILVQKPTKLNGVVLTSNMFGDIISDEASVIPGSLGLLPSAS 268          
BLAST of EY702238 vs. ExPASy Swiss-Prot
Match: LEU3_MOOTA (3-isopropylmalate dehydrogenase OS=Moorella thermoacetica (strain ATCC 39073) GN=leuB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.443e-11
Identity = 89/295 (30.17%), Postives = 131/295 (44.41%), Query Frame = 1
Query:   73 LFPGDGIGPEIA-ESVK---QVFRTAEVPVEWEEHYVG-TEIDPRTQSFLTWESLESVRRNKVGLKGPMA-------TPIGKGHRSLNLTLRKELNLYANVRPCY-------SLPGYKTRYDDVNLITIRENTEGEYSGLE--HQVVRG-VVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEIHMRKLXSTIAA*CL*RIPA------LSMCW*CLTSMVTSLVTYVLG*LVDWA*PLVAIMGK----EDCPA*TGHGSTPDIAGK 861
            + PGDGIGPEI  E+VK    V R   +  ++ E  VG   ID R  + L  E+LE  R++   L G +         P  +   +  L LRKEL LYAN+RP +       + P  K      +LI +RE T G Y G +   Q   G +       TR    R+   AF  A+   R  ++++ KAN++  T  L+     ++  ++PE+ +  +     A  L R PA          +  + S   S++T  +G L     P  +I G     E C     HGS PDIAG+
Sbjct:    6 VLPGDGIGPEIVPEAVKVLEAVSRRVGIEFQFTEALVGGAAIDARGIA-LPPETLELCRQSDAVLLGAVGGPKWDTLPPAERPETAALLPLRKELGLYANLRPAFLYDSLVEASPLKKEIVTGTDLIIVRELTGGLYFGAKKREQTAEGEMAYDTMYYTRAEIERIVRLAFTIARQR-RCHLTSVDKANVL-TTSRLWRDTVEDIKGEFPEVTVEHMYVDNCAMQLVRRPAQFDVIVTENTFGDILSDQASVLTGSIGML-----PSASIGGAVALYEPC-----HGSAPDIAGQ 287          
The following BLAST results are available for this feature:
BLAST of EY702238 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
LEU3_BACCO5.249e-1227.853-isopropylmalate dehydrogenase OS=Bacillus coagul... [more]
LEU3_PHACH9.683e-1225.933-isopropylmalate dehydrogenase OS=Phanerochaete c... [more]
LEU3_ZYGBA1.941e-1127.103-isopropylmalate dehydrogenase OS=Zygosaccharomyc... [more]
LEU3_BACHK1.994e-1128.213-isopropylmalate dehydrogenase OS=Bacillus thurin... [more]
LEU3_AQUAE2.605e-1127.843-isopropylmalate dehydrogenase OS=Aquifex aeolicu... [more]
LEU3_CANRU3.272e-1124.403-isopropylmalate dehydrogenase OS=Candida rugosa ... [more]
LEU3_MOOTA4.443e-1130.173-isopropylmalate dehydrogenase OS=Moorella thermo... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-004-F02-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702238 ID=EY702238; Name=EY702238; organism=Citrus sinensis; type=EST; length=907bp
TCCGACCCACGCGTCCGGCTTTGCCTATTGCCACGGGCCTTCTCCTCCGA
TATTACTCCGATCACCGCCACTCTCTTTCCCGGCGACGGAATCGGCCCCG
AGATCGCCGAGTCCGTTAAACAGGTATTTAGGACAGCTGAGGTGCCAGTT
GAATGGGAGGAGCATTATGTGGGGACTGAAATAGATCCTAGAACACAAAG
TTTTCTGACATGGGAAAGTTTAGAATCTGTGAGAAGGAACAAGGTGGGCT
TGAAAGGGCCTATGGCAACACCAATTGGAAAGGGTCATCGTTCATTGAAT
CTTACTTTGAGGAAAGAACTTAATTTGTATGCCAATGTTAGGCCTTGCTA
CAGCCTCCCTGGATATAAAACTCGCTATGATGATGTGAATCTTATCACTA
TCCGTGAGAACACAGAAGGAGAGTACAGTGGACTTGAACATCAAGTGGTG
AGAGGTGTGGTTGAAAGTCTCAAAATCATTACTCGTCAGGCTAGTTTGAG
AGTTGCTGAATATGCGTTTCACTATGCGAAGACACATGGAAGAGAAAGAG
TATCTGCAATACACAAAGCAAATATTATGCAGAAAACTGATGGGCTTTTT
TTGAAGTGTTGTCGTGAGGTTGCCGAGAAGTACCCTGAGATACATATGAG
GAAGTTGNTATCGACAATTGCTGCATGATGCTTGTGAAGAATCCCAGCGC
TTTCGATGTGTTGGTAATGCCTAACCTCTATGGTGACATCATTAGTGACC
TATGTGCTGGGGTGATTGGTGGATTGGGCTTAACCCCTAGTTGCAATAAT
GGGGAAGGAGGATTGCCCTGCTTGAACTGGTCATGGTTCCACACCTGATA
TTGCTGGAAAATTTGGCAAATCCACTGCTTTGCTGTGAATTCGGGAACAT
GGTGCGC
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