EY702238

Overview
NameEY702238
Unique NameEY702238
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length907
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8225 contig Csv1_Contig8225:183..1090. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY702238 vs. ExPASy Swiss-Prot
Match: IDH_STAAR (Isocitrate dehydrogenase [NADP] OS=Staphylococcus aureus (strain MRSA252) GN=icd PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.472e-22
Identity = 66/206 (32.04%), Postives = 110/206 (53.40%), Query Frame = 1
Query:   82 GDGIGPEIAESVKQVFRTA-------EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPC---YSLPGYKTRYDDVNLITIRENTEGEYSGLEHQ----VVRGVVE-------------------SLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLF 600
            GDGIGP+I ++  +V   A       E  +EW+E   G +    T  +L  E+L++++   + +KGP+ TPIG G RSLN+ LR+EL+L+  +RP      +P    R  DV+++  RENTE  Y+G+E +     V+ V++                    +K ++++ + R+   A  YA  + R+ V+ +HK NIM+ T+G F
Sbjct:   26 GDGIGPDIWKAASRVIDAAVEKAYNGEKRIEWKEVLAGQKAFDTTGEWLPQETLDTIKEYLIAVKGPLTTPIGGGIRSLNVALRQELDLFTCLRPVRWFKGVPSPVKRPQDVDMVIFRENTEDIYAGIEFKEGTTEVKKVIDFLQNEMGATNIRFPETSGIGIKPVSKEGTERLVRAAIQYAIDNNRKSVTLVHKGNIMKFTEGSF 231          
BLAST of EY702238 vs. ExPASy Swiss-Prot
Match: IDH_STAAN (Isocitrate dehydrogenase [NADP] OS=Staphylococcus aureus (strain N315) GN=icd PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.472e-22
Identity = 66/206 (32.04%), Postives = 110/206 (53.40%), Query Frame = 1
Query:   82 GDGIGPEIAESVKQVFRTA-------EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPC---YSLPGYKTRYDDVNLITIRENTEGEYSGLEHQ----VVRGVVE-------------------SLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLF 600
            GDGIGP+I ++  +V   A       E  +EW+E   G +    T  +L  E+L++++   + +KGP+ TPIG G RSLN+ LR+EL+L+  +RP      +P    R  DV+++  RENTE  Y+G+E +     V+ V++                    +K ++++ + R+   A  YA  + R+ V+ +HK NIM+ T+G F
Sbjct:   26 GDGIGPDIWKAASRVIDAAVEKAYNGEKRIEWKEVLAGQKAFDTTGEWLPQETLDTIKEYLIAVKGPLTTPIGGGIRSLNVALRQELDLFTCLRPVRWFKGVPSPVKRPQDVDMVIFRENTEDIYAGIEFKEGTTEVKKVIDFLQNEMGATNIRFPETSGIGIKPVSKEGTERLVRAAIQYAIDNNRKSVTLVHKGNIMKFTEGSF 231          
BLAST of EY702238 vs. ExPASy Swiss-Prot
Match: IDH_STAAM (Isocitrate dehydrogenase [NADP] OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=icd PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.472e-22
Identity = 66/206 (32.04%), Postives = 110/206 (53.40%), Query Frame = 1
Query:   82 GDGIGPEIAESVKQVFRTA-------EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPC---YSLPGYKTRYDDVNLITIRENTEGEYSGLEHQ----VVRGVVE-------------------SLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLF 600
            GDGIGP+I ++  +V   A       E  +EW+E   G +    T  +L  E+L++++   + +KGP+ TPIG G RSLN+ LR+EL+L+  +RP      +P    R  DV+++  RENTE  Y+G+E +     V+ V++                    +K ++++ + R+   A  YA  + R+ V+ +HK NIM+ T+G F
Sbjct:   26 GDGIGPDIWKAASRVIDAAVEKAYNGEKRIEWKEVLAGQKAFDTTGEWLPQETLDTIKEYLIAVKGPLTTPIGGGIRSLNVALRQELDLFTCLRPVRWFKGVPSPVKRPQDVDMVIFRENTEDIYAGIEFKEGTTEVKKVIDFLQNEMGATNIRFPETSGIGIKPVSKEGTERLVRAAIQYAIDNNRKSVTLVHKGNIMKFTEGSF 231          
BLAST of EY702238 vs. ExPASy Swiss-Prot
Match: IDH_STAAC (Isocitrate dehydrogenase [NADP] OS=Staphylococcus aureus (strain COL) GN=icd PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.472e-22
Identity = 66/206 (32.04%), Postives = 110/206 (53.40%), Query Frame = 1
Query:   82 GDGIGPEIAESVKQVFRTA-------EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPC---YSLPGYKTRYDDVNLITIRENTEGEYSGLEHQ----VVRGVVE-------------------SLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLF 600
            GDGIGP+I ++  +V   A       E  +EW+E   G +    T  +L  E+L++++   + +KGP+ TPIG G RSLN+ LR+EL+L+  +RP      +P    R  DV+++  RENTE  Y+G+E +     V+ V++                    +K ++++ + R+   A  YA  + R+ V+ +HK NIM+ T+G F
Sbjct:   26 GDGIGPDIWKAASRVIDAAVEKAYNGEKRIEWKEVLAGQKAFDTTGEWLPQETLDTIKEYLIAVKGPLTTPIGGGIRSLNVALRQELDLFTCLRPVRWFKGVPSPVKRPQDVDMVIFRENTEDIYAGIEFKEGTTEVKKVIDFLQNEMGATNIRFPETSGIGIKPVSKEGTERLVRAAIQYAIDNNRKSVTLVHKGNIMKFTEGSF 231          
BLAST of EY702238 vs. ExPASy Swiss-Prot
Match: IDH_CALNO (Isocitrate dehydrogenase [NADP] OS=Caldococcus noboribetus GN=icd PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.923e-22
Identity = 71/204 (34.80%), Postives = 104/204 (50.98%), Query Frame = 1
Query:   76 FPGDGIGPEIAESVKQVFRTAEVP-------VEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPC--YSLPGYKTRYDDVNLITIRENTEGEYSGL-------EHQVVRGVVE-------------SLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLF 600
            F GDGIGPEI ES K+V   A          + W E   G E      S L   +L++ +  +V LKGP+ TP+G G RSLN+TLR  L+LY+NVRP   Y  P      ++++ +  RENTE  Y+G+       E Q +R  ++              +K I++  + R    A  +A  +G + V+ +HK NIM+ T+G F
Sbjct:   38 FKGDGIGPEIVESAKKVLDAAVDKAYGGTRRIVWWEVTAGEEAQKECGSLLPDGTLQAFKLARVNLKGPLTTPVGGGFRSLNVTLRMVLDLYSNVRPVKWYGQPTPHCHPENIDWVIFRENTEDVYAGIEWPFDSPEAQKIRDFLKKEFGIELTPDTGIGIKPISKWRTQRHVRRAMEWAIRNGYKHVTIMHKGNIMKYTEGAF 241          
BLAST of EY702238 vs. ExPASy Swiss-Prot
Match: LEU3_MYCGI (3-isopropylmalate dehydrogenase OS=Mycobacterium gilvum (strain PYR-GCK) GN=leuB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.264e-22
Identity = 55/199 (27.64%), Postives = 96/199 (48.24%), Query Frame = 1
Query:   82 GDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNK---VGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRY---DDVNLITIRENTEGEYSGLEHQVVRG----VVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEIHM 648
            GDGIGPE+     +V       VE  E+ +G  +  RT   L    L+ ++ +    +G  G  + P G   R L L +R EL+ + N+RP    PG ++      +++ + +RE TEG Y+G    +  G    +   + + T     RV + AF  A+   R+ ++ +HK N++     L+ +  + VA +YPE+ +
Sbjct:    8 GDGIGPEVIGEALRVLDAVVPGVEKTEYDLGARLYHRTGEVLPDSVLDELKGHDAILLGAIGDPSMPSGVLERGLLLRIRFELDHHINLRPGRLYPGVQSPLAGNPEIDFVVVREGTEGPYTGNGGAIRVGTPHEIATEVSVNTAYGVRRVVQDAFKRAQQR-RKHLTLVHKNNVLTNAGSLWWRTVQAVAAEYPEVEV 205          

HSP 2 Score: 50.0618 bits (118), Expect = 2.264e-22
Identity = 23/46 (50.00%), Postives = 31/46 (67.39%), Query Frame = 3
Query:  660 IDNCCMMLVKNPSAFDVLVMPNLYGDIISDLCAGVIGGLGLTPSCN 797
            +D   + +V +P  FDV+V  NL+GDII+DL A V GG+GL  S N
Sbjct:  210 VDAATIHMVTDPGRFDVIVTDNLFGDIITDLAAAVCGGIGLAASGN 255          
BLAST of EY702238 vs. ExPASy Swiss-Prot
Match: LEU3_STRGG (3-isopropylmalate dehydrogenase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=leuB PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.982e-22
Identity = 57/207 (27.54%), Postives = 95/207 (45.89%), Query Frame = 1
Query:   61 ITATLFPGDGIGPEIAESVKQVFRTA---EVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNK---VGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRY---DDVNLITIRENTEGEYSGLEHQVVRG----VVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEI 642
            I   + PGDGIG E+     +V       +V +E +E+ +G +   RT   L    LE+++ +    +G  G  + P G   R L L LR   + + N+RP    P   T      D++ + +RE TEG Y+G    +  G    V   + + T     RV   AF  A    R++++ +HK N++     L+     +VA +YP++
Sbjct:    5 IDLAVIPGDGIGQEVVAQGLKVLNAVLPQDVKLETKEYDLGAQRWHRTGDTLPDAELEALKGHDAILLGAIGDPSVPSGVLERGLLLKLRFAFDHFINLRPSKLFPNTATPLAGRPDIDFVVVREGTEGPYTGNGGSLRTGTPAEVATEVSLNTAYGVERVVRDAFERAAARPRKKLTLVHKNNVLVYAGHLWKNTFDKVAAEYPQV 211          

HSP 2 Score: 51.6026 bits (122), Expect = 4.982e-22
Identity = 27/67 (40.30%), Postives = 38/67 (56.72%), Query Frame = 3
Query:  627 EVP*DTYEEVXIDNCCMMLVKNPSAFDVLVMPNLYGDIISDLCAGVIGGLGLTPSCN-NGEGGLPCL 824
            E P  + + + +D   +  V  P  FDV+V  NL+GDI++DL A V GG+GL  S N N  G  P +
Sbjct:  207 EYPQVSTDYLHVDAATIFFVTQPERFDVIVTDNLFGDILTDLAAAVSGGIGLAASGNINPTGAFPSM 273          
BLAST of EY702238 vs. ExPASy Swiss-Prot
Match: LEU3_BIFLI (3-isopropylmalate dehydrogenase OS=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / NCTC 11817 / S12) GN=leuB PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.984e-22
Identity = 59/203 (29.06%), Postives = 91/203 (44.83%), Query Frame = 1
Query:   73 LFPGDGIGPEIAESVKQVFRTAEVPV---EWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKGPMATPIGKG---HRSLNLTLRKELNLYANVRPCYSLPGYKTRY---DDVNLITIRENTEGEYSGLEHQVVRG----VVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEI 642
            + PGDGIG E+    ++    A   V   E+E   +G E   R  + L  +    ++ N   L G +  P  K     R L L LR +L+ Y N+RP     G  +      D++ + +RE TEG Y G    V R     V   + I T     RV  YAF  A    ++ V+ +HK N++     ++ +   +V E+YPE+
Sbjct:    9 VIPGDGIGKEVTPWAQKALEKAAEGVADFEYENFDLGAERYLRDGAILPEDEEGRIKANDAILLGAVGDPRIKAGILERGLLLKLRFDLDQYVNLRPSKLYKGVTSPLANPGDIDFVVVREGTEGLYCGAGGAVRRNTPQEVATEVSINTAYGVERVVRYAFKLAMKR-KKHVTLVHKKNVLVNAGDMWQRIVDKVGEEYPEV 210          

HSP 2 Score: 51.2174 bits (121), Expect = 4.984e-22
Identity = 26/67 (38.81%), Postives = 39/67 (58.21%), Query Frame = 3
Query:  627 EVP*DTYEEVXIDNCCMMLVKNPSAFDVLVMPNLYGDIISDLCAGVIGGLGLTPS-CNNGEGGLPCL 824
            E P  T++   ID   + LV +PS FDV++  NL+GDI++D    V+GG+G + S C N     P +
Sbjct:  206 EYPEVTHDYQHIDAATIFLVSDPSRFDVILTDNLFGDILTDEAGSVVGGVGYSASGCINASDEFPSM 272          
BLAST of EY702238 vs. ExPASy Swiss-Prot
Match: LEU3_CORDI (3-isopropylmalate dehydrogenase OS=Corynebacterium diphtheriae GN=leuB PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.438e-22
Identity = 55/198 (27.78%), Postives = 87/198 (43.94%), Query Frame = 1
Query:   82 GDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNKVGLKG----PMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRY---DDVNLITIRENTEGEYSG----LEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEI 642
            GDGIGPE+     +V       +E  ++ +G     R    L    L S+R +   L G    P   P G   R L L +R  L+ + N+RP    P   +      D++ + +RE TEG Y G    L       +   +   TR    RV   AF  A+   ++ ++ +HK N++    GL+ +   E+A +YPE+
Sbjct:    8 GDGIGPEVTAEALKVLNAVRDDIEVTDYDLGARRYLRNGELLADADLVSLREHDAILLGAIGAPGEVPPGVLERGLLLKMRFALDHHVNLRPSKLYPTATSPLANPGDIDFVVVREGTEGLYCGNGGTLREGTPHEIASEVSQNTRYGVERVVRDAFERAQNR-KKHLTLVHKTNVLVNAGGLWQRTVNEIATEYPEV 204          

HSP 2 Score: 50.447 bits (119), Expect = 8.438e-22
Identity = 25/57 (43.86%), Postives = 35/57 (61.40%), Query Frame = 3
Query:  627 EVP*DTYEEVXIDNCCMMLVKNPSAFDVLVMPNLYGDIISDLCAGVIGGLGLTPSCN 797
            E P  T +   ID   + +V +PS +DV+V  NL+GDI++DL   V GG+GL  S N
Sbjct:  200 EYPEVTVDYNHIDAATIYMVTDPSRYDVIVTDNLFGDILTDLAGAVTGGIGLAASGN 256          
BLAST of EY702238 vs. ExPASy Swiss-Prot
Match: LEU3_MYCUA (3-isopropylmalate dehydrogenase OS=Mycobacterium ulcerans (strain Agy99) GN=leuB PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.098e-21
Identity = 53/202 (26.24%), Postives = 91/202 (45.05%), Query Frame = 1
Query:   82 GDGIGPEIAESVKQVFRTAEVPVEWEEHYVGTEIDPRTQSFLTWESLESVRRNK---VGLKGPMATPIGKGHRSLNLTLRKELNLYANVRPCYSLPGYKTRY------DDVNLITIRENTEGEYSG----LEHQVVRGVVESLKIITRQASLRVAEYAFHYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEIHM 648
            GDGIGPE+     ++    +  VE   + +G      T   L    +  +R +    +G  G  + P G   R L L LR EL+ + N+RP    PG K+         +++ + +RE TEG Y+G    +       V   + + T     RV   AF  A    R+ ++ +HK N++     L+ +  +E+ E+YP++ +
Sbjct:    8 GDGIGPEVVAQAVKILDVVQPGVEKTNYDLGARRFHATGEILPDSVIAELREHDAILLGAIGDPSVPSGVLERGLLLRLRFELDYHINLRPGRLYPGVKSPLALEPGNPEIDFVVVREGTEGPYTGNGGAIRVGTANEVATEVSVNTAFGVRRVVRDAFERAMRR-RKHLTLVHKNNVLTFAGSLWWRTVQEIGEEYPDVEL 208          

HSP 2 Score: 50.0618 bits (118), Expect = 1.098e-21
Identity = 23/46 (50.00%), Postives = 31/46 (67.39%), Query Frame = 3
Query:  660 IDNCCMMLVKNPSAFDVLVMPNLYGDIISDLCAGVIGGLGLTPSCN 797
            +D   + +V +P  FDV+V  NL+GDII+DL A V GG+GL  S N
Sbjct:  213 VDAATIHMVTDPGRFDVIVTDNLFGDIITDLAAAVCGGIGLAASGN 258          
The following BLAST results are available for this feature:
BLAST of EY702238 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 177
Match NameE-valueIdentityDescription
IDH_STAAR1.472e-2232.04Isocitrate dehydrogenase [NADP] OS=Staphylococcus ... [more]
IDH_STAAN1.472e-2232.04Isocitrate dehydrogenase [NADP] OS=Staphylococcus ... [more]
IDH_STAAM1.472e-2232.04Isocitrate dehydrogenase [NADP] OS=Staphylococcus ... [more]
IDH_STAAC1.472e-2232.04Isocitrate dehydrogenase [NADP] OS=Staphylococcus ... [more]
IDH_CALNO1.923e-2234.80Isocitrate dehydrogenase [NADP] OS=Caldococcus nob... [more]
LEU3_MYCGI2.264e-2227.643-isopropylmalate dehydrogenase OS=Mycobacterium g... [more]
LEU3_STRGG4.982e-2227.543-isopropylmalate dehydrogenase OS=Streptomyces gr... [more]
LEU3_BIFLI4.984e-2229.063-isopropylmalate dehydrogenase OS=Bifidobacterium... [more]
LEU3_CORDI8.438e-2227.783-isopropylmalate dehydrogenase OS=Corynebacterium... [more]
LEU3_MYCUA1.098e-2126.243-isopropylmalate dehydrogenase OS=Mycobacterium u... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-004-F02-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702238 ID=EY702238; Name=EY702238; organism=Citrus sinensis; type=EST; length=907bp
TCCGACCCACGCGTCCGGCTTTGCCTATTGCCACGGGCCTTCTCCTCCGA
TATTACTCCGATCACCGCCACTCTCTTTCCCGGCGACGGAATCGGCCCCG
AGATCGCCGAGTCCGTTAAACAGGTATTTAGGACAGCTGAGGTGCCAGTT
GAATGGGAGGAGCATTATGTGGGGACTGAAATAGATCCTAGAACACAAAG
TTTTCTGACATGGGAAAGTTTAGAATCTGTGAGAAGGAACAAGGTGGGCT
TGAAAGGGCCTATGGCAACACCAATTGGAAAGGGTCATCGTTCATTGAAT
CTTACTTTGAGGAAAGAACTTAATTTGTATGCCAATGTTAGGCCTTGCTA
CAGCCTCCCTGGATATAAAACTCGCTATGATGATGTGAATCTTATCACTA
TCCGTGAGAACACAGAAGGAGAGTACAGTGGACTTGAACATCAAGTGGTG
AGAGGTGTGGTTGAAAGTCTCAAAATCATTACTCGTCAGGCTAGTTTGAG
AGTTGCTGAATATGCGTTTCACTATGCGAAGACACATGGAAGAGAAAGAG
TATCTGCAATACACAAAGCAAATATTATGCAGAAAACTGATGGGCTTTTT
TTGAAGTGTTGTCGTGAGGTTGCCGAGAAGTACCCTGAGATACATATGAG
GAAGTTGNTATCGACAATTGCTGCATGATGCTTGTGAAGAATCCCAGCGC
TTTCGATGTGTTGGTAATGCCTAACCTCTATGGTGACATCATTAGTGACC
TATGTGCTGGGGTGATTGGTGGATTGGGCTTAACCCCTAGTTGCAATAAT
GGGGAAGGAGGATTGCCCTGCTTGAACTGGTCATGGTTCCACACCTGATA
TTGCTGGAAAATTTGGCAAATCCACTGCTTTGCTGTGAATTCGGGAACAT
GGTGCGC
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