EY702230

Overview
NameEY702230
Unique NameEY702230
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY702230_ssr32 microsatellite EY702230_ssr32:32..41. BLAST: Citrus ESTs to Prunus persica proteins V1
EY702230_ssr89 microsatellite EY702230_ssr89:89..103. BLAST: Citrus ESTs to Prunus persica proteins V1
EY702230_ssr135 microsatellite EY702230_ssr135:135..146. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1910 contig Csv1_Contig1910:95..984. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY702230 vs. ExPASy Swiss-Prot
Match: YAB5_ORYSI (Protein YABBY 5 OS=Oryza sativa subsp. indica GN=YAB5 PE=2 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 1.448e-43
Identity = 102/218 (46.79%), Postives = 121/218 (55.50%), Query Frame = 2
Query:  227 ERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNM--------VSALQAVP----LQDPQKQHINLED-----------------------SITKDCGSSSKCNKFSSAFETAEHETPRMPPIRPP-----EKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLD-GNKQAKLDKAAAYAEGTQKSNGFY 757
            E++CYVHCN+C+TILAV VPCSSLF  VTVRCGHCANLL+VN+         S    +P    L  P   H  L++                       S    C +++     +SA   A    P+ P   P      EKRQRVPSAYNRFIK+EIQRIKASNPDI+HREAFS AAKNWAHFPHIHFGL  D G K+  +       E     +G Y
Sbjct:   29 EQLCYVHCNFCDTILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAAASTANQLPFGQALLSPTSPHGLLDEVPSFQAPASLMTEQASPNVSSITSSNSSCANNAPATSMASAANKATQREPQQPKNAPSANRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWAHFPHIHFGLMPDQGLKKTGIQSQDGAGECMLFKDGLY 246          
BLAST of EY702230 vs. ExPASy Swiss-Prot
Match: YAB3_ORYSJ (Protein YABBY 3 OS=Oryza sativa subsp. japonica GN=YAB3 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.820e-39
Identity = 102/239 (42.68%), Postives = 122/239 (51.05%), Query Frame = 2
Query:  215 DLSSERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNM------VSALQAVPLQDPQK----------------------QHINLEDSITKD----------------CGSSSKCNKFSSAFETA-------------EHETPRMPPI---RPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQAKLDKAAAYAEGTQKSNG 751
            D   E++CYVHC+YC+T+L VSVP SSLF  VTVRCGHC++LL VNM       +A  A P   P                         H +L D I+                    S++ C   +S    A             +  +PR       RPPEKRQRVPSAYNRFIK+EIQRIKA NPDISHREAFS AAKNWAHFPHIHFGL  D      L K +   +  Q+ +G
Sbjct:   54 DSEQEQLCYVHCHYCDTVLVVSVPSSSLFETVTVRCGHCSSLLTVNMRGLLLPTTAAAAPPPPPPPPPPPPPPAAHFPHSLNLAPANPPHHHSLLDEISTANSPTQLLLEQHGLGGLMASAASCRNNNSPAAAAAPPPPTSQGKAAAKEPSPRTNTAVINRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPD---HQGLKKTSLLPQDHQRKDG 289          
BLAST of EY702230 vs. ExPASy Swiss-Prot
Match: YAB4_ARATH (Axial regulator YABBY 4 OS=Arabidopsis thaliana GN=YAB4 PE=1 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 5.707e-32
Identity = 75/177 (42.37%), Postives = 109/177 (61.58%), Query Frame = 2
Query:  230 RVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQ---------DPQKQHINLEDSITKDCG--SSSKCNKFSSAFETAEHETPRMPPI-----RPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQAKLDK 712
            ++C+V C +C TIL VSVP +SL  +VTVRCGHC +LL+VN++ A   +PL          +  K+ +   D + ++    +  K N  ++   ++++E   +  +     +PPEKRQR PSAYN FIKEEI+R+KA NP ++H+EAFS AAKNWAHFP  H       NK+A  D+
Sbjct:   20 QICHVQCGFCTTILLVSVPFTSLSMVVTVRCGHCTSLLSVNLMKA-SFIPLHLLASLSHLDETGKEEVAATDGVEEEAWKVNQEKENSPTTLVSSSDNEDEDVSRVYQVVNKPPEKRQRAPSAYNCFIKEEIRRLKAQNPSMAHKEAFSLAAKNWAHFPPAH-------NKRAASDQ 188          
BLAST of EY702230 vs. ExPASy Swiss-Prot
Match: YABDL_ORYSJ (Protein DROOPING LEAF OS=Oryza sativa subsp. japonica GN=DL PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.310e-31
Identity = 70/149 (46.98%), Postives = 88/149 (59.06%), Query Frame = 2
Query:  206 MSLDLSSERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQDPQKQHINLEDSITKDCGSSSKCNKFSSAFETAEHETPRMP-PIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWA 649
            M L   SE +CYV C YCNT+LAV VPC  L + VTV+CGHC NL  ++        P+  P     +        C    +         T+   +PR P  ++PPEK+ R+PSAYNRF++EEIQRIKA+ PDI HREAFS AAKNWA
Sbjct:    1 MDLVSPSEHLCYVRCTYCNTVLAVGVPCKRLMDTVTVKCGHCNNLSFLS-----PRPPMVQPLSPTDHPLGPFQGPCTDCRRNQPLPLVSPTSNEGSPRAPFVVKPPEKKHRLPSAYNRFMREEIQRIKAAKPDIPHREAFSMAAKNWA 144          
BLAST of EY702230 vs. ExPASy Swiss-Prot
Match: CRC_ARATH (Protein CRABS CLAW OS=Arabidopsis thaliana GN=CRC PE=1 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 4.090e-30
Identity = 68/148 (45.95%), Postives = 93/148 (62.84%), Query Frame = 2
Query:  224 SERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQDPQKQHINLEDSITKDCGSSSKCNKFSSAFETAEHETPRMPP----IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHF 655
            +E + YV C+ CNTILAV +P   + + VTV+CGHC NL      S L   P   P + H++L   +    GS  K    SS+  +   + P  P     ++PPEK+QR+PSAYNRF+++EIQRIK++NP+I HREAFS AAKNWA +
Sbjct:   18 AEHLYYVRCSICNTILAVGIPLKRMLDTVTVKCGHCGNL------SFLTTTP---PLQGHVSLTLQMQSFGGSDYKKGSSSSSSSSTSSDQPPSPSPPFVVKPPEKKQRLPSAYNRFMRDEIQRIKSANPEIPHREAFSAAAKNWAKY 156          
BLAST of EY702230 vs. ExPASy Swiss-Prot
Match: YAB7_ORYSJ (Protein YABBY 7 OS=Oryza sativa subsp. japonica GN=YAB7 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.362e-25
Identity = 63/148 (42.57%), Postives = 91/148 (61.49%), Query Frame = 2
Query:  227 ERVCYVHCNYCNTILAVSVPCSSLFNIVTVRCGHCANLLN-VNMVSALQAVPLQ-DPQKQHINLEDSITKDCGSSSKCNKFSSAFETAEHETPRMPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHI 664
            ER+  V C++C T+L VSVPCSS+  +V V+CGHC+ +L+ VN+  +  +  ++  PQ+           D  SS    +   A + A          +PP ++QR PSAYN F+KEEI+RIK+  P+I+H++AFSTAAKNWAH P I
Sbjct:   14 ERLGCVQCSFCATVLLVSVPCSSVLRVVAVQCGHCSGILSAVNLPPSPVSASIELTPQELDAGPPPGEYSD-ESSGDDREGRDAEDDAPAPAAAAVANKPPGRKQRTPSAYNCFVKEEIKRIKSMEPNITHKQAFSTAAKNWAHLPRI 160          
The following BLAST results are available for this feature:
BLAST of EY702230 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
YAB5_ORYSI1.448e-4346.79Protein YABBY 5 OS=Oryza sativa subsp. indica GN=Y... [more]
YAB3_ORYSJ4.820e-3942.68Protein YABBY 3 OS=Oryza sativa subsp. japonica GN... [more]
YAB4_ARATH5.707e-3242.37Axial regulator YABBY 4 OS=Arabidopsis thaliana GN... [more]
YABDL_ORYSJ6.310e-3146.98Protein DROOPING LEAF OS=Oryza sativa subsp. japon... [more]
CRC_ARATH4.090e-3045.95Protein CRABS CLAW OS=Arabidopsis thaliana GN=CRC ... [more]
YAB7_ORYSJ1.362e-2542.57Protein YABBY 7 OS=Oryza sativa subsp. japonica GN... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-004-E06-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702230 ID=EY702230; Name=EY702230; organism=Citrus sinensis; type=EST; length=883bp
TTTTCCTTCTTTTCTTATCACCATTTTCTCCCTCTCTCTCTCCAAATAAT
TATTATTTATACATGATATCAAACCATTTTGTTTTGTTTTCTTCTTCTTC
TTCGTCTTTGTCTTTCTTTTAATTTGTTCAAGATTTGATTGATTGATAAT
AGAACTCTTGCGTTTCTATTGTTTGTCGGTACACTTCTTGATCTCCACTG
AAACTATGTCACTGGACTTGTCATCTGAACGTGTTTGTTATGTTCACTGC
AACTACTGCAACACCATTTTAGCGGTGAGTGTTCCTTGCTCAAGTTTGTT
CAACATTGTGACTGTTAGATGTGGGCATTGCGCCAATTTGCTAAATGTAA
ACATGGTATCTGCACTTCAAGCAGTTCCTCTTCAAGACCCTCAGAAACAA
CACATAAACCTAGAAGATTCCATTACTAAGGATTGTGGATCATCTTCAAA
ATGCAATAAGTTTTCTTCAGCATTTGAGACTGCAGAGCATGAAACTCCTC
GAATGCCTCCTATTCGTCCCCCAGAGAAGAGACAACGAGTTCCTTCTGCA
TACAATAGGTTTATCAAGGAGGAAATCCAAAGGATTAAGGCCAGTAACCC
TGACATCAGCCATAGAGAAGCTTTTAGCACAGCAGCAAAAAATTGGGCAC
ATTTTCCTCACATTCACTTTGGATTAAAGCTGGATGGCAACAAGCAAGCA
AAACTAGACAAGGCTGCAGCCTACGCAGAGGGCACTCAAAAGTCCAATGG
ATTCTACTAAAACATCTATATAATAAGTATATGATGTGAGTAGATGCATG
CAGCTCGAAGCAGAAGTCATATAAATATTGTAGAAGCATGCAGAAGCACN
AGTCATATATAGAGATATCTATCCATTGTCTAT
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