EY702228

Overview
NameEY702228
Unique NameEY702228
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length870
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9394 contig Csv1_Contig9394:992..1860. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY702228 vs. ExPASy Swiss-Prot
Match: AMYB_SECCE (Beta-amylase (Fragment) OS=Secale cereale GN=BMY1 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 1.013e-25
Identity = 66/136 (48.53%), Postives = 83/136 (61.03%), Query Frame = 3
Query:  432 SHAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDHEQPQDALCAPEKLVKQVASATQTAHVPLAGENALPRYDEYAHEQILRAA-------SLDVDXQMCAFTYLRMNPHLFQPXYWRQFVAFVKKMN 818
            SHA E+TAGYYN   RD Y PIA+ML RH A  NFTC EMRD EQ   A+ APE+LV+QV SA     + +A ENALPRYD  A+  ILR A       S   + ++  FTYLR++  L +   +  F  FV +M+
Sbjct:    1 SHAAEVTAGYYNLHDRDDYRPIARMLTRHHASLNFTCAEMRDSEQSSQAMSAPEELVQQVWSAGWREGLNIACENALPRYDPTAYNTILRNARPHGINHSSPTEHKLFGFTYLRLSNQLLEGQNYVNFKTFVDRMH 136          
BLAST of EY702228 vs. ExPASy Swiss-Prot
Match: AMYB_THETU (Thermophilic beta-amylase OS=Thermoanaerobacter thermosulfurogenes PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.257e-25
Identity = 85/256 (33.20%), Postives = 118/256 (46.09%), Query Frame = 3
Query:   21 LVEIQVGMGPAGELRYPSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAES------AGKPEWGSTGPTDAGHYNNWPEDTQFFRKENGGWCSPYGEFFLSWYSQMLLDHGERILASAKSIFDAT-GVKISVKIAGIHWHYGSRS--HAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRD-HEQPQDALCAPEKLVKQVASATQTAHVPLAGENALPRYDEYAHEQILRAASLDVDXQMCAFTYLRMN 758
            + +I +  GP+GELRYPSY   +G W +PG G+ QCY K  ++S + A +S      A    WG T  TD    +   +   FF     G+ + YG  FL+WY  +L +    I + A S FD    V I  KIAG+HW Y S +  HA E  AGYYN      Y  +            FTC+EM D +        AP  LV  VA+      +   GENAL   +   ++  +  A+         FT LR++
Sbjct:  183 ITKIYISGGPSGELRYPSYNPSHG-WTYPGRGSLQCYSKAAITSFQNAMKSKYGTIAAVNSAWG-TSLTDFSQISPPTDGDNFF---TNGYKTTYGNDFLTWYQSVLTNELANIASVAHSCFDPVFNVPIGAKIAGVHWLYNSPTMPHAAEYCAGYYN------YSTLLDQFKASNLAMTFTCLEMDDSNAYVSPYYSAPMTLVHYVANLANNKGIVHNGENALAISNN--NQAYVNCANELTGYNFSGFTLLRLS 425          
BLAST of EY702228 vs. ExPASy Swiss-Prot
Match: AMYB_PAEPO (Beta/alpha-amylase OS=Paenibacillus polymyxa PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.369e-22
Identity = 83/225 (36.89%), Postives = 108/225 (48.00%), Query Frame = 3
Query:   27 EIQVGMGPAGELRYPSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAESAGKPEWGSTGPTDAGHYN--------NWPEDTQFFRKENGGWCSPYGEFFLSWYSQMLLDHGERILASAKSIFDAT-GVKISVKIAGIHWHYGSRS--HAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDH-EQPQDALCAPEKLVKQVASATQTAHVPLAGENALP 665
            +I +  GP+GELRYPSY    G W +PG G FQ Y +    + K A  +A   ++GS    +A            N P D   F   NGG+ S YG+ FLSWY  +L  H   I A+A   FD+  GV+I  KI+G+HW   + +  H  E   GYY+      Y  + Q          FTC+EM D    P  +L  P  LV  V+S      V L GENALP
Sbjct:  188 KIYLSGGPSGELRYPSYYPAAG-WSYPGRGKFQAYTE----TAKNAFRTAMNDKYGSLDKINAAWGTKLTSLSQINPPTDGDGFYT-NGGYNSAYGKDFLSWYQSVLEKHLGVIGAAAHKNFDSVFGVRIGAKISGLHWQMNNPAMPHGTEQAGGYYD------YNRLIQKFKDADLDLTFTCLEMSDSGTAPNYSL--PSTLVDTVSSIANAKGVRLNGENALP 398          
BLAST of EY702228 vs. ExPASy Swiss-Prot
Match: AMYB_BACFI (Beta-amylase (Fragment) OS=Bacillus firmus PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.159e-21
Identity = 79/222 (35.59%), Postives = 105/222 (47.30%), Query Frame = 3
Query:   27 EIQVGMGPAGELRYPSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAESAG------KPEWGSTGPTDAGHYNNWPEDTQFFRKENGGWCSPYGEFFLSWYSQMLLDHGERILASAKSIFDAT-GVKISVKIAGIHWHYGSRS--HAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDH-EQPQDALCAPEKLVKQVASATQTAHVPLAGENAL 662
            +I +  GP+GELRYPSY    G W +PG G FQ Y +   ++ + A              WG T  T     N   +   F+   NGG+ S YG+ FLSWY  +L  H   I A+A   FD+  GV+I  KI+G+HW   + +  H+ E   GYY+      Y  + Q          FTC+EM D    P  +L  P  LV  V+S      V L GENAL
Sbjct:  188 KIYLSGGPSGELRYPSYYPAAG-WSYPGRGKFQAYTETAKNAFRTAMNDKYGSLDKINTAWG-TKLTSLSQINPPTDGDGFYT--NGGYNSAYGKDFLSWYQSVLEKHLGVIGAAAHKNFDSVFGVRIGAKISGLHWQMNNPAMPHSTEQAGGYYD------YNRLIQKFKDADLDLTFTCLEMSDSGTAPNYSL--PSTLVDTVSSIANAKGVRLNGENAL 397          
BLAST of EY702228 vs. ExPASy Swiss-Prot
Match: AMYB_BACCI (Beta-amylase OS=Bacillus circulans PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.813e-21
Identity = 81/225 (36.00%), Postives = 108/225 (48.00%), Query Frame = 3
Query:   27 EIQVGMGPAGELRYPSYPEQNGTWKFPGIGAFQCYDKYMLSSLKAAAESAGKPEWGSTGPTDAGHYNNW--------PEDTQFFRKENGGWCSPYGEFFLSWYSQMLLDHGERILASAKSIFDAT-GVKISVKIAGIHWHYGSRS--HAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDH-EQPQDALCAPEKLVKQVASATQTAHVPLAGENALP 665
            +I +  GP+GELRYPSY    G W +P  G FQ Y +    + K+A  +A   ++GS    +A    N         P D+  F    GG+   YG+ FLSWY  +L +H   I A+A   FD   GV+I  KI+GIHW   + S  H+ E   GYY+      Y  + Q          FT +EM D    P  +L  P  LV  V+S   +  V L GENALP
Sbjct:  189 KIYLSGGPSGELRYPSYYPAAG-WSYPARGKFQVYTE----TAKSAFRTAMTTKYGSLDKINAAWGTNLTSMSQISPPTDSDGFYT-GGGYNITYGKDFLSWYQSVLENHLGVIGAAAHKNFDPVFGVRIGAKISGIHWQMNNPSMPHSAEHAGGYYD------YNRLIQKFKDTDLDLTFTALEMYDSGTAPNYSL--PSTLVDTVSSIANSKGVRLNGENALP 399          
BLAST of EY702228 vs. ExPASy Swiss-Prot
Match: AMYB_BACCE (Beta-amylase OS=Bacillus cereus GN=spoII PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 2.186e-20
Identity = 80/254 (31.50%), Postives = 118/254 (46.46%), Query Frame = 3
Query:   21 LVEIQVGMGPAGELRYPSYPEQNGTWKFPGIGAFQCYDKYMLSSL------KAAAESAGKPEWGSTGPTDAGHYNNWPEDTQFFRKENGGWCSPYGEFFLSWYSQMLLDHGERILASAKSIFDAT-GVKISVKIAGIHWHYGSRS--HAPELTAGYYNTRFRDGYLPIAQMLARHGAIFNFTCIEMRDH-EQPQDALCAPEKLVKQVASATQTAHVPLAGENALPRYDEYAHEQILRAASLDVDXQMCAFTYLR 752
            + +I +  GPAGELRYPSY   +GT  +P  G FQ Y ++  S        K  + +     WG+   ++       P D + F     G+ S YG+ +L WY  +L +H + I   A + FD T  V I  KIAG+HW Y + +  H  E  AGY      + Y  +            FTC+EM D    P+ ++  P+ LV+ +A+      + L GENAL   +E   E+  R A +  +     FT LR
Sbjct:  190 IAKIYLSGGPAGELRYPSYTTSDGT-GYPSRGKFQAYTEFAKSKFRLWVLNKYGSLNEVNKAWGTKLISELAILP--PSDGEQFLM--NGYLSMYGKDYLEWYQGILENHTKLIGELAHNAFDTTFQVPIGAKIAGVHWQYNNPTIPHGAEKPAGY------NDYSHLLDAFKSAKLDVTFTCLEMTDKGSYPEYSM--PKTLVQNIATLANEKGIVLNGENALSIGNE---EEYKRVAEMAFNYNFAGFTLLR 427          
The following BLAST results are available for this feature:
BLAST of EY702228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
AMYB_SECCE1.013e-2548.53Beta-amylase (Fragment) OS=Secale cereale GN=BMY1 ... [more]
AMYB_THETU2.257e-2533.20Thermophilic beta-amylase OS=Thermoanaerobacter th... [more]
AMYB_PAEPO1.369e-2236.89Beta/alpha-amylase OS=Paenibacillus polymyxa PE=1 ... [more]
AMYB_BACFI1.159e-2135.59Beta-amylase (Fragment) OS=Bacillus firmus PE=3 SV... [more]
AMYB_BACCI9.813e-2136.00Beta-amylase OS=Bacillus circulans PE=3 SV=1[more]
AMYB_BACCE2.186e-2031.50Beta-amylase OS=Bacillus cereus GN=spoII PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-004-E04-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702228 ID=EY702228; Name=EY702228; organism=Citrus sinensis; type=EST; length=870bp
CCACGCGTCCGCCCACGCGTTTGGTGGAAATCCAAGTGGGAATGGGTCCA
GCTGGTGAGCTGCGTTACCCTTCGTATCCAGAGCAGAATGGGACATGGAA
ATTCCCAGGAATTGGAGCTTTCCAGTGTTATGATAAGTATATGCTCAGTA
GCTTAAAAGCAGCAGCTGAATCTGCTGGTAAGCCAGAATGGGGCAGCACA
GGCCCTACTGATGCTGGACATTACAACAACTGGCCAGAAGATACACAGTT
TTTCCGAAAAGAAAATGGTGGTTGGTGTAGCCCTTATGGTGAATTTTTCC
TAAGCTGGTATTCGCAGATGCTCTTAGATCACGGAGAGAGAATTCTCGCA
TCTGCCAAGTCAATTTTCGATGCTACAGGTGTTAAGATCTCGGTTAAGAT
TGCAGGAATCCACTGGCACTATGGGTCTAGGTCCCATGCCCCTGAGCTCA
CAGCTGGATATTACAATACACGATTCCGTGATGGTTACCTCCCTATTGCC
CAGATGCTAGCACGGCATGGTGCCATATTCAACTTTACTTGCATAGAGAT
GCGTGATCATGAACAACCACAAGATGCCCTTTGTGCACCTGAGAAGCTAG
TCAAGCAAGTGGCTTCAGCAACTCAGACAGCACACGTTCCTCTGGCCGGG
GAAAATGCGTTGCCACGTTATGATGAATACGCTCACGAGCAGATCTTGCG
AGCAGCATCACTTGATGTAGACNAACAGATGTGTGCATTCACGTACTTGA
GGATGAACCCACATTTATTCCAACCCGANTATTGGAGACAGTTTGTAGCA
TTTGTGAAGAAGATGAATGAAGGGAANGGATGTTCACGNTGTTGGGGAGC
AGTGGAGCGCGAAGCTGAGC
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