EY702100

Overview
NameEY702100
Unique NameEY702100
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY702100_ssr121 microsatellite EY702100_ssr121:121..144. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS1_ACECL (Ribulose bisphosphate carboxylase small chain 1 (Fragment) OS=Acetabularia cliftonii GN=RBCS-1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.280e-12
Identity = 29/55 (52.73%), Postives = 39/55 (70.91%), Query Frame = 2
Query:  419 YYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD  RQV +  F
Sbjct:   53 YQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGF 107          
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS1_ACEAT (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Acetabularia acetabulum GN=RBCS-1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.280e-12
Identity = 29/55 (52.73%), Postives = 39/55 (70.91%), Query Frame = 2
Query:  419 YYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD  RQV +  F
Sbjct:  109 YQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGF 163          
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS6_ACECL (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Acetabularia cliftonii GN=RBCS-6 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.978e-12
Identity = 29/55 (52.73%), Postives = 39/55 (70.91%), Query Frame = 2
Query:  419 YYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD  RQV +  F
Sbjct:  109 YQDNRYWTMWKLPMFGCTDGSQVLTEIQACTKAFPDAYIRLVCFDANRQVQISGF 163          
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS2_THIFE (Ribulose bisphosphate carboxylase small chain 2 OS=Thiobacillus ferrooxidans GN=cbbS2 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.079e-12
Identity = 31/64 (48.44%), Postives = 39/64 (60.94%), Query Frame = 2
Query:  374 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQ 565
            + KGW     H+ P    G YW MWKLPM+G TD   +LKE    HK  PH+ VRI+G+DN +Q
Sbjct:   41 VSKGWNPAVEHTEPENAFGNYWYMWKLPMFGETDVDTILKEAERCHKRNPHNHVRIVGYDNFKQ 104          
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS_BATOE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Batophora oerstedii GN=RBCS PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 8.664e-12
Identity = 28/55 (50.91%), Postives = 38/55 (69.09%), Query Frame = 2
Query:  419 YYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            Y D RYWTMWKLPM+GC D +QVL E+    K +P +++R++ FD  RQV +  F
Sbjct:  102 YQDNRYWTMWKLPMFGCIDGSQVLTEISACTKAFPDAYIRLVCFDANRQVQISGF 156          
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS5_ACEAT (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia acetabulum GN=RBCS-5 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.664e-12
Identity = 28/55 (50.91%), Postives = 38/55 (69.09%), Query Frame = 2
Query:  419 YYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            Y D RYWTMWKLPM+GCTD +QVL E+      +P +++R++ FD  RQV +  F
Sbjct:  110 YQDNRYWTMWKLPMFGCTDGSQVLSEIQACTNAFPDAYIRLVCFDANRQVQISGF 164          
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS4_ACEAT (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia acetabulum GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.664e-12
Identity = 28/55 (50.91%), Postives = 38/55 (69.09%), Query Frame = 2
Query:  419 YYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            Y D RYWTMWKLPM+GCTD +QVL E+      +P +++R++ FD  RQV +  F
Sbjct:  109 YQDNRYWTMWKLPMFGCTDGSQVLSEIQACTNAFPDAYIRLVCFDANRQVQISGF 163          
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS7_ACECL (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Acetabularia cliftonii GN=RBCS-7 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.478e-11
Identity = 28/55 (50.91%), Postives = 39/55 (70.91%), Query Frame = 2
Query:  419 YYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            Y D RYWTMWKLPM+GCTD +QVL ++    K +P +++R++ FD  RQV +  F
Sbjct:  110 YQDNRYWTMWKLPMFGCTDGSQVLSDMQACTKAFPDAYIRLVCFDANRQVQICGF 164          
The following BLAST results are available for this feature:
BLAST of EY702100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
RBS1_ACECL2.280e-1252.73Ribulose bisphosphate carboxylase small chain 1 (F... [more]
RBS1_ACEAT2.280e-1252.73Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS6_ACECL2.978e-1252.73Ribulose bisphosphate carboxylase small chain 6, c... [more]
RBS2_THIFE5.079e-1248.44Ribulose bisphosphate carboxylase small chain 2 OS... [more]
RBS_BATOE8.664e-1250.91Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS5_ACEAT8.664e-1250.91Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS4_ACEAT8.664e-1250.91Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS7_ACECL1.478e-1150.91Ribulose bisphosphate carboxylase small chain 7, c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-001-A12-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702100 ID=EY702100; Name=EY702100; organism=Citrus sinensis; type=EST; length=890bp
GGGGGGGGGGGGGGGGGGGGNTTTTTTTTATNTAATGGTNNNNNNNNNNN
NNNNNNNNNNNNNNNTTCGTCGACCCACGCGTCCGGGATTCCCTGCTCGG
AATTCGAGTTGGAGGTCATTTCTCTCTCTCTCTCTCTCTCTCTCTGTCTC
TCTTAATATATACTATTATTTTGACGGAACCTTATCTATGTGCTTTAGGA
GAAAAATTACACATGTCATGAATCTATTGGTCAGAGATATCCATTCAATA
TCAAAACCTGCATTAACAATTGCTTACTTAAAATCTAAGCTTTTGGGTTA
AGCGGATTTTATCAGGCAAATGGGTGGTGATATTTGATTTTTTTTTTTTT
GTTTTTTCTTTTGGGTGGCGTGACTGCAGAAAGGATGGGTGTACCGTGAG
CACCACAGCTCACCAGGATACTACGATGGACGCTACTGGACAATGTGGAA
GCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTTG
GGGAGGTCCATAAGGAATACCCACATTCATTCGTCCGAATTATCGGATTT
GACAACAAGCGTCAAGTTGCAGTGCATCAGTTTCCTTGCTGCCAAGCCAC
CAGGCGTCTAGGCTCCCCATTAAATCTGCGTAACCACCCATGCCATATTG
TTGATTATAATTAAGCGGAACCCCCATAATGATCATTCGATCAATGGGGG
TTCCGTTTAGCGTCAATTTGCACTTAAGGCTGCTGTCGTGGCTGGTCAAA
TTTTTTTGGTTTTCTCCCCGAACTGGGCCTTTTTTTCTTTTAAAAACATT
TTAATAAATGGAATCGCTAAAAAAGAAGACAAAAAAGAAACTATTTCAAA
TGAACATTTCCTTCCTTTATCTTTTACATCTAATCCAGCT
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