EY702100 | Citrus Genome Database

Overview


Name	EY702100
Unique Name	EY702100
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	890

Libraries


Library Name	Type
Sweet orange fruit, development stadium (2 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
EY702100_ssr121	microsatellite	EY702100_ssr121:121..144.	BLAST: Citrus ESTs to Prunus persica proteins V1

Homology

[Close]

BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS1B_ARATH (Ribulose bisphosphate carboxylase small chain 1B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1B PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 8.657e-26
Identity = 49/70 (70.00%), Postives = 58/70 (82.86%), Query Frame = 2

Query:  374 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            L+ G+VYREH ++PGYYDGRYWTMWKLP++GCTD+ QVLKEV E  KEYP +F+RIIGFDN RQV    F
Sbjct:  101 LEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISF 170

HSP 2 Score: 25.0238 bits (53), Expect = 8.657e-26
Identity = 9/13 (69.23%), Postives = 12/13 (92.31%), Query Frame = 3

Query:  564 KLQCISFLAAKPP 602
            ++QCISF+A KPP
Sbjct:  164 QVQCISFIAYKPP 176

[Close]

BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS_HORVU (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.798e-25
Identity = 53/76 (69.74%), Postives = 61/76 (80.26%), Query Frame = 2

Query:  383 GWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF-----PCCQ 595
            G+++REH++SPGYYDGRYWTMWKLPM+GCTDATQVL EV EV KEYP ++VRIIGFDN RQV    F     P CQ
Sbjct:   94 GFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKPPGCQ 169

[Close]

BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS_CAPAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Capsicum annuum GN=RBCS PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.907e-25
Identity = 50/69 (72.46%), Postives = 56/69 (81.16%), Query Frame = 2

Query:  377 QKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            + G+VYREHH SPGYYDGRYWTMWKLPM+GCTDATQVL EV E  K YP +++RIIGFDN RQV    F
Sbjct:  104 EHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDATQVLNEVQEAKKAYPQAWIRIIGFDNVRQVQCISF 172

HSP 2 Score: 22.3274 bits (46), Expect = 1.907e-25
Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 3

Query:  564 KLQCISFLAAKP 599
            ++QCISF+A KP
Sbjct:  166 QVQCISFIAYKP 177

[Close]

BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS2_SPIOL (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Spinacia oleracea GN=RBCS2 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.909e-25
Identity = 48/67 (71.64%), Postives = 56/67 (83.58%), Query Frame = 2

Query:  383 GWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            G+VYREHH+SPGYYDGRYWTMWKLPM+GCTD  QVL E+ E  KEYP++F+RIIGFD+ RQV    F
Sbjct:  106 GFVYREHHNSPGYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNRQVQCVSF 172

HSP 2 Score: 23.8682 bits (50), Expect = 1.909e-25
Identity = 8/14 (57.14%), Postives = 12/14 (85.71%), Query Frame = 3

Query:  564 KLQCISFLAAKPPG 605
            ++QC+SF+A KP G
Sbjct:  166 QVQCVSFIAYKPAG 179

[Close]

BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS1_SOYBN (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Glycine max GN=RBCS-1 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.910e-25
Identity = 48/70 (68.57%), Postives = 56/70 (80.00%), Query Frame = 2

Query:  374 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            L+ G+VYREH+ SP YYDGRYWTMWKLPM+GCTDA+QVLKE+ E    YP+ F+RIIGFDN RQV    F
Sbjct:  101 LEHGFVYREHNRSPXYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISF 170

HSP 2 Score: 27.335 bits (59), Expect = 1.910e-25
Identity = 10/14 (71.43%), Postives = 13/14 (92.86%), Query Frame = 3

Query:  564 KLQCISFLAAKPPG 605
            ++QCISF+A KPPG
Sbjct:  164 QVQCISFIAYKPPG 177

[Close]

BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS3B_SOLLC (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Solanum lycopersicum GN=RBCS-3B PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.485e-25
Identity = 50/69 (72.46%), Postives = 56/69 (81.16%), Query Frame = 2

Query:  377 QKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            + G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDATQVL EV E  K YP ++VRIIGFDN RQV    F
Sbjct:  104 EHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISF 172

HSP 2 Score: 24.2534 bits (51), Expect = 2.485e-25
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 3

Query:  564 KLQCISFLAAKPPG 605
            ++QCISF+A KP G
Sbjct:  166 QVQCISFIAYKPEG 179

[Close]

BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS3A_SOLLC (Ribulose bisphosphate carboxylase small chain 3A/3C, chloroplastic OS=Solanum lycopersicum GN=RBCS-3A/3C PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.485e-25
Identity = 50/69 (72.46%), Postives = 56/69 (81.16%), Query Frame = 2

Query:  377 QKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            + G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDATQVL EV E  K YP ++VRIIGFDN RQV    F
Sbjct:  104 EHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISF 172

HSP 2 Score: 24.2534 bits (51), Expect = 2.485e-25
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 3

Query:  564 KLQCISFLAAKPPG 605
            ++QCISF+A KP G
Sbjct:  166 QVQCISFIAYKPEG 179

[Close]

BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS1_SOLLC (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum lycopersicum GN=RBCS-1 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 2.485e-25
Identity = 50/69 (72.46%), Postives = 58/69 (84.06%), Query Frame = 2

Query:  377 QKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            ++G+VYRE++SSPGYYDGRYWTMWKLPM+GCTDATQVL EV E  K YP ++VRIIGFDN RQV    F
Sbjct:  105 ERGFVYRENNSSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISF 173

HSP 2 Score: 24.2534 bits (51), Expect = 2.485e-25
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 3

Query:  564 KLQCISFLAAKPPG 605
            ++QCISF+A KP G
Sbjct:  167 QVQCISFIAYKPEG 180

[Close]

BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS6_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.487e-25
Identity = 50/69 (72.46%), Postives = 58/69 (84.06%), Query Frame = 2

Query:  377 QKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            ++G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E  K YP  FVRIIGFDNKRQV    F
Sbjct:  103 KEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISF 171

HSP 2 Score: 22.3274 bits (46), Expect = 2.487e-25
Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 3

Query:  564 KLQCISFLAAKP 599
            ++QCISF+A KP
Sbjct:  165 QVQCISFIAYKP 176

[Close]

BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS5_LEMGI (Ribulose bisphosphate carboxylase small chain SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.487e-25
Identity = 50/69 (72.46%), Postives = 58/69 (84.06%), Query Frame = 2

Query:  377 QKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            ++G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E  K YP  FVRIIGFDNKRQV    F
Sbjct:  103 KEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISF 171

HSP 2 Score: 22.3274 bits (46), Expect = 2.487e-25
Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 3

Query:  564 KLQCISFLAAKP 599
            ++QCISF+A KP
Sbjct:  165 QVQCISFIAYKP 176

The following BLAST results are available for this feature:

BLAST of EY702100 vs. ExPASy Swiss-Prot

BLAST of EY702100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108


Match Name	E-value	Identity	Description
RBS1B_ARATH	8.657e-26	70.00	Ribulose bisphosphate carboxylase small chain 1B, ...	[more]
RBS_HORVU	1.798e-25	69.74	Ribulose bisphosphate carboxylase small chain, chl...	[more]
RBS_CAPAN	1.907e-25	72.46	Ribulose bisphosphate carboxylase small chain, chl...	[more]
RBS2_SPIOL	1.909e-25	71.64	Ribulose bisphosphate carboxylase small chain 2, c...	[more]
RBS1_SOYBN	1.910e-25	68.57	Ribulose bisphosphate carboxylase small chain 1, c...	[more]
RBS3B_SOLLC	2.485e-25	72.46	Ribulose bisphosphate carboxylase small chain 3B, ...	[more]
RBS3A_SOLLC	2.485e-25	72.46	Ribulose bisphosphate carboxylase small chain 3A/3...	[more]
RBS1_SOLLC	2.485e-25	72.46	Ribulose bisphosphate carboxylase small chain 1, c...	[more]
RBS6_LEMGI	2.487e-25	72.46	Ribulose bisphosphate carboxylase small chain SSU5...	[more]
RBS5_LEMGI	2.487e-25	72.46	Ribulose bisphosphate carboxylase small chain SSU5...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-701-001-A12-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY702100 ID=EY702100; Name=EY702100; organism=Citrus sinensis; type=EST; length=890bp
GGGGGGGGGGGGGGGGGGGGNTTTTTTTTATNTAATGGTNNNNNNNNNNN
NNNNNNNNNNNNNNNTTCGTCGACCCACGCGTCCGGGATTCCCTGCTCGG
AATTCGAGTTGGAGGTCATTTCTCTCTCTCTCTCTCTCTCTCTCTGTCTC
TCTTAATATATACTATTATTTTGACGGAACCTTATCTATGTGCTTTAGGA
GAAAAATTACACATGTCATGAATCTATTGGTCAGAGATATCCATTCAATA
TCAAAACCTGCATTAACAATTGCTTACTTAAAATCTAAGCTTTTGGGTTA
AGCGGATTTTATCAGGCAAATGGGTGGTGATATTTGATTTTTTTTTTTTT
GTTTTTTCTTTTGGGTGGCGTGACTGCAGAAAGGATGGGTGTACCGTGAG
CACCACAGCTCACCAGGATACTACGATGGACGCTACTGGACAATGTGGAA
GCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTTG
GGGAGGTCCATAAGGAATACCCACATTCATTCGTCCGAATTATCGGATTT
GACAACAAGCGTCAAGTTGCAGTGCATCAGTTTCCTTGCTGCCAAGCCAC
CAGGCGTCTAGGCTCCCCATTAAATCTGCGTAACCACCCATGCCATATTG
TTGATTATAATTAAGCGGAACCCCCATAATGATCATTCGATCAATGGGGG
TTCCGTTTAGCGTCAATTTGCACTTAAGGCTGCTGTCGTGGCTGGTCAAA
TTTTTTTGGTTTTCTCCCCGAACTGGGCCTTTTTTTCTTTTAAAAACATT
TTAATAAATGGAATCGCTAAAAAAGAAGACAAAAAAGAAACTATTTCAAA
TGAACATTTCCTTCCTTTATCTTTTACATCTAATCCAGCT