EY702100 | Citrus Genome Database

Overview


Name	EY702100
Unique Name	EY702100
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	890

Libraries


Library Name	Type
Sweet orange fruit, development stadium (2 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
EY702100_ssr121	microsatellite	EY702100_ssr121:121..144.	BLAST: Citrus ESTs to Prunus persica proteins V1

Homology

[Close]

BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS4_LEMGI (Ribulose bisphosphate carboxylase small chain SSU40B, chloroplastic OS=Lemna gibba GN=SSU40B PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.487e-25
Identity = 50/69 (72.46%), Postives = 58/69 (84.06%), Query Frame = 2

Query:  377 QKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            ++G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E  K YP  FVRIIGFDNKRQV    F
Sbjct:  103 KEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISF 171

HSP 2 Score: 22.3274 bits (46), Expect = 2.487e-25
Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 3

Query:  564 KLQCISFLAAKP 599
            ++QCISF+A KP
Sbjct:  165 QVQCISFIAYKP 176

[Close]

BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS3_LEMGI (Ribulose bisphosphate carboxylase small chain SSU40A, chloroplastic OS=Lemna gibba GN=SSU40A PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.487e-25
Identity = 50/69 (72.46%), Postives = 58/69 (84.06%), Query Frame = 2

Query:  377 QKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            ++G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E  K YP  FVRIIGFDNKRQV    F
Sbjct:  103 KEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISF 171

HSP 2 Score: 22.3274 bits (46), Expect = 2.487e-25
Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 3

Query:  564 KLQCISFLAAKP 599
            ++QCISF+A KP
Sbjct:  165 QVQCISFIAYKP 176

[Close]

BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS2_LEMGI (Ribulose bisphosphate carboxylase small chain SSU26, chloroplastic OS=Lemna gibba GN=SSU26 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.487e-25
Identity = 50/69 (72.46%), Postives = 58/69 (84.06%), Query Frame = 2

Query:  377 QKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            ++G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E  K YP  FVRIIGFDNKRQV    F
Sbjct:  103 KEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISF 171

HSP 2 Score: 22.3274 bits (46), Expect = 2.487e-25
Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 3

Query:  564 KLQCISFLAAKP 599
            ++QCISF+A KP
Sbjct:  165 QVQCISFIAYKP 176

[Close]

BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS3_SOLTU (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Solanum tuberosum GN=RBCS-3 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.234e-25
Identity = 49/69 (71.01%), Postives = 56/69 (81.16%), Query Frame = 2

Query:  377 QKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            + G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDATQVL EV E  K YP +++RIIGFDN RQV    F
Sbjct:  105 EHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWIRIIGFDNVRQVQCISF 173

HSP 2 Score: 24.2534 bits (51), Expect = 3.234e-25
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 3

Query:  564 KLQCISFLAAKPPG 605
            ++QCISF+A KP G
Sbjct:  167 QVQCISFIAYKPEG 180

[Close]

BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS1_SOLTU (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum tuberosum GN=RBCS-1 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.234e-25
Identity = 49/69 (71.01%), Postives = 56/69 (81.16%), Query Frame = 2

Query:  377 QKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            + G+VYRE+H SPGYYDGRYWTMWKLPM+GCTDATQVL EV E  K YP +++RIIGFDN RQV    F
Sbjct:  105 EHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQECKKSYPQAWIRIIGFDNVRQVQCISF 173

HSP 2 Score: 24.2534 bits (51), Expect = 3.234e-25
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 3

Query:  564 KLQCISFLAAKPPG 605
            ++QCISF+A KP G
Sbjct:  167 QVQCISFIAYKPEG 180

[Close]

BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS3_AMAHP (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 3.234e-25
Identity = 49/70 (70.00%), Postives = 54/70 (77.14%), Query Frame = 2

Query:  374 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            L+  +VYRE+H SPGY DGRYWTMWKLPMYGCTD  QVL EV E  K YP +F+RIIGFDNKRQV    F
Sbjct:  103 LEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPSAFIRIIGFDNKRQVQCVSF 172

HSP 2 Score: 26.9498 bits (58), Expect = 3.234e-25
Identity = 9/14 (64.29%), Postives = 13/14 (92.86%), Query Frame = 3

Query:  564 KLQCISFLAAKPPG 605
            ++QC+SF+A KPPG
Sbjct:  166 QVQCVSFIAFKPPG 179

[Close]

BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS2_PETHY (Ribulose bisphosphate carboxylase small chain SSU11A, chloroplastic OS=Petunia hybrida GN=RBCS PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 4.210e-25
Identity = 47/69 (68.12%), Postives = 57/69 (82.61%), Query Frame = 2

Query:  377 QKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            + G+VYRE+H+SP YYDGRYWTMWKLPM+GCTDATQVL E+ E  K YP++++RIIGFDN RQV    F
Sbjct:  104 EHGFVYREYHASPRYYDGRYWTMWKLPMFGCTDATQVLGELQEAKKAYPNAWIRIIGFDNVRQVQCISF 172

HSP 2 Score: 27.335 bits (59), Expect = 4.210e-25
Identity = 10/14 (71.43%), Postives = 13/14 (92.86%), Query Frame = 3

Query:  564 KLQCISFLAAKPPG 605
            ++QCISF+A KPPG
Sbjct:  166 QVQCISFIAYKPPG 179

[Close]

BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS1_PETHY (Ribulose bisphosphate carboxylase small chain SSU8, chloroplastic OS=Petunia hybrida GN=RBCS PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 4.210e-25
Identity = 47/69 (68.12%), Postives = 57/69 (82.61%), Query Frame = 2

Query:  377 QKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            + G+VYRE+H+SP YYDGRYWTMWKLPM+GCTDATQVL E+ E  K YP++++RIIGFDN RQV    F
Sbjct:  104 EHGFVYREYHASPRYYDGRYWTMWKLPMFGCTDATQVLGELQEAKKAYPNAWIRIIGFDNVRQVQCISF 172

HSP 2 Score: 27.335 bits (59), Expect = 4.210e-25
Identity = 10/14 (71.43%), Postives = 13/14 (92.86%), Query Frame = 3

Query:  564 KLQCISFLAAKPPG 605
            ++QCISF+A KPPG
Sbjct:  166 QVQCISFIAYKPPG 179

[Close]

BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS_GLYTO (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Glycine tomentella GN=RBCS PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.213e-25
Identity = 48/70 (68.57%), Postives = 57/70 (81.43%), Query Frame = 2

Query:  374 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            L+ G+VYRE+H SPGYYDGRYWTMWKLP++GCTDA+QVLKE+ E    YP+ F+RIIGFDN RQV    F
Sbjct:  101 LEHGFVYRENHRSPGYYDGRYWTMWKLPVFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISF 170

HSP 2 Score: 25.0238 bits (53), Expect = 4.213e-25
Identity = 9/13 (69.23%), Postives = 12/13 (92.31%), Query Frame = 3

Query:  564 KLQCISFLAAKPP 602
            ++QCISF+A KPP
Sbjct:  164 QVQCISFIAYKPP 176

[Close]

BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS0_SOLTU (Ribulose bisphosphate carboxylase small chain C, chloroplastic OS=Solanum tuberosum GN=RBCS-C PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.208e-24
Identity = 48/69 (69.57%), Postives = 55/69 (79.71%), Query Frame = 2

Query:  377 QKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            + G+VYREH+SSPGYYDGRYWTMWKLPM+GCTD TQVL EV E    YP +++RIIGFDN RQV    F
Sbjct:  105 EHGFVYREHNSSPGYYDGRYWTMWKLPMFGCTDGTQVLAEVQEAKNAYPQAWIRIIGFDNVRQVQCISF 173

HSP 2 Score: 24.2534 bits (51), Expect = 1.208e-24
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 3

Query:  564 KLQCISFLAAKPPG 605
            ++QCISF+A KP G
Sbjct:  167 QVQCISFIAYKPEG 180

The following BLAST results are available for this feature:

BLAST of EY702100 vs. ExPASy Swiss-Prot

BLAST of EY702100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108


Match Name	E-value	Identity	Description
RBS4_LEMGI	2.487e-25	72.46	Ribulose bisphosphate carboxylase small chain SSU4...	[more]
RBS3_LEMGI	2.487e-25	72.46	Ribulose bisphosphate carboxylase small chain SSU4...	[more]
RBS2_LEMGI	2.487e-25	72.46	Ribulose bisphosphate carboxylase small chain SSU2...	[more]
RBS3_SOLTU	3.234e-25	71.01	Ribulose bisphosphate carboxylase small chain 3, c...	[more]
RBS1_SOLTU	3.234e-25	71.01	Ribulose bisphosphate carboxylase small chain 1, c...	[more]
RBS3_AMAHP	3.234e-25	70.00	Ribulose bisphosphate carboxylase small chain 3, c...	[more]
RBS2_PETHY	4.210e-25	68.12	Ribulose bisphosphate carboxylase small chain SSU1...	[more]
RBS1_PETHY	4.210e-25	68.12	Ribulose bisphosphate carboxylase small chain SSU8...	[more]
RBS_GLYTO	4.213e-25	68.57	Ribulose bisphosphate carboxylase small chain, chl...	[more]
RBS0_SOLTU	1.208e-24	69.57	Ribulose bisphosphate carboxylase small chain C, c...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-701-001-A12-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY702100 ID=EY702100; Name=EY702100; organism=Citrus sinensis; type=EST; length=890bp
GGGGGGGGGGGGGGGGGGGGNTTTTTTTTATNTAATGGTNNNNNNNNNNN
NNNNNNNNNNNNNNNTTCGTCGACCCACGCGTCCGGGATTCCCTGCTCGG
AATTCGAGTTGGAGGTCATTTCTCTCTCTCTCTCTCTCTCTCTCTGTCTC
TCTTAATATATACTATTATTTTGACGGAACCTTATCTATGTGCTTTAGGA
GAAAAATTACACATGTCATGAATCTATTGGTCAGAGATATCCATTCAATA
TCAAAACCTGCATTAACAATTGCTTACTTAAAATCTAAGCTTTTGGGTTA
AGCGGATTTTATCAGGCAAATGGGTGGTGATATTTGATTTTTTTTTTTTT
GTTTTTTCTTTTGGGTGGCGTGACTGCAGAAAGGATGGGTGTACCGTGAG
CACCACAGCTCACCAGGATACTACGATGGACGCTACTGGACAATGTGGAA
GCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTTG
GGGAGGTCCATAAGGAATACCCACATTCATTCGTCCGAATTATCGGATTT
GACAACAAGCGTCAAGTTGCAGTGCATCAGTTTCCTTGCTGCCAAGCCAC
CAGGCGTCTAGGCTCCCCATTAAATCTGCGTAACCACCCATGCCATATTG
TTGATTATAATTAAGCGGAACCCCCATAATGATCATTCGATCAATGGGGG
TTCCGTTTAGCGTCAATTTGCACTTAAGGCTGCTGTCGTGGCTGGTCAAA
TTTTTTTGGTTTTCTCCCCGAACTGGGCCTTTTTTTCTTTTAAAAACATT
TTAATAAATGGAATCGCTAAAAAAGAAGACAAAAAAGAAACTATTTCAAA
TGAACATTTCCTTCCTTTATCTTTTACATCTAATCCAGCT