EY702100

Overview
NameEY702100
Unique NameEY702100
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY702100_ssr121 microsatellite EY702100_ssr121:121..144. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS2A_SOLLC (Ribulose bisphosphate carboxylase small chain 2A, chloroplastic OS=Solanum lycopersicum GN=RBCS-2A PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.572e-24
Identity = 49/69 (71.01%), Postives = 56/69 (81.16%), Query Frame = 2 
Query:  377 QKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            + G+VYRE++ SPGYYDGRYWTMWKLPM+GCTDATQVL EV E  K YP ++VRIIGFDN RQV    F
Sbjct:  104 EHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISF 172

HSP 2 Score: 24.2534 bits (51), Expect = 1.572e-24
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 3 
Query:  564 KLQCISFLAAKPPG 605
            ++QCISF+A KP G
Sbjct:  166 QVQCISFIAYKPEG 179
[Close]
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS_ZANAE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.573e-24
Identity = 49/67 (73.13%), Postives = 55/67 (82.09%), Query Frame = 2 
Query:  383 GWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTD++QVLKEV E  K YP  F RIIGFDN RQV    F
Sbjct:  104 GFVYREYHNSPGYYDGRYWTMWKLPMFGCTDSSQVLKEVDECSKAYPDYFNRIIGFDNTRQVQCISF 170

HSP 2 Score: 23.483 bits (49), Expect = 1.573e-24
Identity = 9/14 (64.29%), Postives = 11/14 (78.57%), Query Frame = 3 
Query:  564 KLQCISFLAAKPPG 605
            ++QCISFL  KP G
Sbjct:  164 QVQCISFLTYKPEG 177
[Close]
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS4_FLAPR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Flaveria pringlei GN=RBCS4 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.573e-24
Identity = 47/70 (67.14%), Postives = 57/70 (81.43%), Query Frame = 2 
Query:  374 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            L+ G+VYRE+  SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E  KEYP +++RIIGFDN RQV    F
Sbjct:  101 LEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISF 170

HSP 2 Score: 25.409 bits (54), Expect = 1.573e-24
Identity = 9/14 (64.29%), Postives = 13/14 (92.86%), Query Frame = 3 
Query:  564 KLQCISFLAAKPPG 605
            ++QCISF+A+KP G
Sbjct:  164 QVQCISFIASKPDG 177
[Close]
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS2_FLAPR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Flaveria pringlei GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.573e-24
Identity = 47/70 (67.14%), Postives = 57/70 (81.43%), Query Frame = 2 
Query:  374 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            L+ G+VYRE+  SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E  KEYP +++RIIGFDN RQV    F
Sbjct:  101 LEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISF 170

HSP 2 Score: 25.409 bits (54), Expect = 1.573e-24
Identity = 9/14 (64.29%), Postives = 13/14 (92.86%), Query Frame = 3 
Query:  564 KLQCISFLAAKPPG 605
            ++QCISF+A+KP G
Sbjct:  164 QVQCISFIASKPEG 177
[Close]
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS1_LEMGI (Ribulose bisphosphate carboxylase small chain SSU1, chloroplastic OS=Lemna gibba GN=SSU1 PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 1.574e-24
Identity = 49/69 (71.01%), Postives = 58/69 (84.06%), Query Frame = 2 
Query:  377 QKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            ++G+VYRE+++SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E  K YP  FVRIIGFDNKRQV    F
Sbjct:   99 KEGFVYRENNASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISF 167

HSP 2 Score: 22.3274 bits (46), Expect = 1.574e-24
Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 3 
Query:  564 KLQCISFLAAKP 599
            ++QCISF+A KP
Sbjct:  161 QVQCISFIAYKP 172
[Close]
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS7_FLAPR (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Flaveria pringlei GN=RBCS7 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.574e-24
Identity = 47/70 (67.14%), Postives = 57/70 (81.43%), Query Frame = 2 
Query:  374 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            L+ G+VYRE+  SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E  KEYP +++RIIGFDN RQV    F
Sbjct:   96 LEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISF 165

HSP 2 Score: 25.409 bits (54), Expect = 1.574e-24
Identity = 9/14 (64.29%), Postives = 13/14 (92.86%), Query Frame = 3 
Query:  564 KLQCISFLAAKPPG 605
            ++QCISF+A+KP G
Sbjct:  159 QVQCISFIASKPDG 172
[Close]
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS5_FLAPR (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Flaveria pringlei GN=RBCS5 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.574e-24
Identity = 47/70 (67.14%), Postives = 57/70 (81.43%), Query Frame = 2 
Query:  374 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            L+ G+VYRE+  SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E  KEYP +++RIIGFDN RQV    F
Sbjct:   96 LEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISF 165

HSP 2 Score: 25.409 bits (54), Expect = 1.574e-24
Identity = 9/14 (64.29%), Postives = 13/14 (92.86%), Query Frame = 3 
Query:  564 KLQCISFLAAKPPG 605
            ++QCISF+A+KP G
Sbjct:  159 QVQCISFIASKPDG 172
[Close]
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS3_FLAPR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Flaveria pringlei GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.574e-24
Identity = 47/70 (67.14%), Postives = 57/70 (81.43%), Query Frame = 2 
Query:  374 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            L+ G+VYRE+  SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E  KEYP +++RIIGFDN RQV    F
Sbjct:   96 LEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISF 165

HSP 2 Score: 25.409 bits (54), Expect = 1.574e-24
Identity = 9/14 (64.29%), Postives = 13/14 (92.86%), Query Frame = 3 
Query:  564 KLQCISFLAAKPPG 605
            ++QCISF+A+KP G
Sbjct:  159 QVQCISFIASKPDG 172
[Close]
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS3_PEA (Ribulose bisphosphate carboxylase small chain 3A, chloroplastic OS=Pisum sativum GN=RBCS-3A PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.988e-24
Identity = 51/70 (72.86%), Postives = 58/70 (82.86%), Query Frame = 2 
Query:  374 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            L+KG+VYREH+ SPGYYDGRYWTMWKLPM+G TDA+QVLKE+ EV   YP +FVRIIGFDN RQV    F
Sbjct:  103 LEKGFVYREHNKSPGYYDGRYWTMWKLPMFGTTDASQVLKELDEVVAAYPQAFVRIIGFDNVRQVQCISF 172
[Close]
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS2_PEA (Ribulose bisphosphate carboxylase small chain 3C, chloroplastic OS=Pisum sativum GN=RBCS-3C PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.988e-24
Identity = 51/70 (72.86%), Postives = 58/70 (82.86%), Query Frame = 2 
Query:  374 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            L+KG+VYREH+ SPGYYDGRYWTMWKLPM+G TDA+QVLKE+ EV   YP +FVRIIGFDN RQV    F
Sbjct:  103 LEKGFVYREHNKSPGYYDGRYWTMWKLPMFGTTDASQVLKELDEVVAAYPQAFVRIIGFDNVRQVQCISF 172
The following BLAST results are available for this feature:
BLAST of EY702100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
RBS2A_SOLLC1.572e-2471.01Ribulose bisphosphate carboxylase small chain 2A, ... [more]
RBS_ZANAE1.573e-2473.13Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS4_FLAPR1.573e-2467.14Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS2_FLAPR1.573e-2467.14Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS1_LEMGI1.574e-2471.01Ribulose bisphosphate carboxylase small chain SSU1... [more]
RBS7_FLAPR1.574e-2467.14Ribulose bisphosphate carboxylase small chain 7, c... [more]
RBS5_FLAPR1.574e-2467.14Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS3_FLAPR1.574e-2467.14Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS3_PEA1.988e-2472.86Ribulose bisphosphate carboxylase small chain 3A, ... [more]
RBS2_PEA1.988e-2472.86Ribulose bisphosphate carboxylase small chain 3C, ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-701-001-A12-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702100 ID=EY702100; Name=EY702100; organism=Citrus sinensis; type=EST; length=890bp
GGGGGGGGGGGGGGGGGGGGNTTTTTTTTATNTAATGGTNNNNNNNNNNN
NNNNNNNNNNNNNNNTTCGTCGACCCACGCGTCCGGGATTCCCTGCTCGG
AATTCGAGTTGGAGGTCATTTCTCTCTCTCTCTCTCTCTCTCTCTGTCTC
TCTTAATATATACTATTATTTTGACGGAACCTTATCTATGTGCTTTAGGA
GAAAAATTACACATGTCATGAATCTATTGGTCAGAGATATCCATTCAATA
TCAAAACCTGCATTAACAATTGCTTACTTAAAATCTAAGCTTTTGGGTTA
AGCGGATTTTATCAGGCAAATGGGTGGTGATATTTGATTTTTTTTTTTTT
GTTTTTTCTTTTGGGTGGCGTGACTGCAGAAAGGATGGGTGTACCGTGAG
CACCACAGCTCACCAGGATACTACGATGGACGCTACTGGACAATGTGGAA
GCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTTG
GGGAGGTCCATAAGGAATACCCACATTCATTCGTCCGAATTATCGGATTT
GACAACAAGCGTCAAGTTGCAGTGCATCAGTTTCCTTGCTGCCAAGCCAC
CAGGCGTCTAGGCTCCCCATTAAATCTGCGTAACCACCCATGCCATATTG
TTGATTATAATTAAGCGGAACCCCCATAATGATCATTCGATCAATGGGGG
TTCCGTTTAGCGTCAATTTGCACTTAAGGCTGCTGTCGTGGCTGGTCAAA
TTTTTTTGGTTTTCTCCCCGAACTGGGCCTTTTTTTCTTTTAAAAACATT
TTAATAAATGGAATCGCTAAAAAAGAAGACAAAAAAGAAACTATTTCAAA
TGAACATTTCCTTCCTTTATCTTTTACATCTAATCCAGCT
back to top