EY702100 | Citrus Genome Database

Overview


Name	EY702100
Unique Name	EY702100
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	890

Libraries


Library Name	Type
Sweet orange fruit, development stadium (2 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
EY702100_ssr121	microsatellite	EY702100_ssr121:121..144.	BLAST: Citrus ESTs to Prunus persica proteins V1

Homology

BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS_TOBAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana tabacum GN=RBCS PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.046e-24
Identity = 48/69 (69.57%), Postives = 56/69 (81.16%), Query Frame = 2

Query:  377 QKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            + G+VYRE++ SPGYYDGRYWTMWKLPM+GCTDATQVL EV E  K YP +++RIIGFDN RQV    F
Sbjct:  104 EHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISF 172

HSP 2 Score: 24.2534 bits (51), Expect = 2.046e-24
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 3

Query:  564 KLQCISFLAAKPPG 605
            ++QCISF+A KP G
Sbjct:  166 QVQCISFIAYKPEG 179

BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBSC_SOLTU (Ribulose bisphosphate carboxylase small chain 2C, chloroplastic OS=Solanum tuberosum GN=RBCS-2C PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.046e-24
Identity = 48/69 (69.57%), Postives = 56/69 (81.16%), Query Frame = 2

Query:  377 QKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            + G+VYRE++ SPGYYDGRYWTMWKLPM+GCTDATQVL EV E  K YP +++RIIGFDN RQV    F
Sbjct:  104 EHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISF 172

HSP 2 Score: 24.2534 bits (51), Expect = 2.046e-24
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 3

Query:  564 KLQCISFLAAKPPG 605
            ++QCISF+A KP G
Sbjct:  166 QVQCISFIAYKPEG 179

BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBSB_SOLTU (Ribulose bisphosphate carboxylase small chain 2B, chloroplastic OS=Solanum tuberosum GN=RBCS-2B PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.046e-24
Identity = 48/69 (69.57%), Postives = 56/69 (81.16%), Query Frame = 2

Query:  377 QKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            + G+VYRE++ SPGYYDGRYWTMWKLPM+GCTDATQVL EV E  K YP +++RIIGFDN RQV    F
Sbjct:  104 EHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISF 172

HSP 2 Score: 24.2534 bits (51), Expect = 2.046e-24
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 3

Query:  564 KLQCISFLAAKPPG 605
            ++QCISF+A KP G
Sbjct:  166 QVQCISFIAYKPEG 179

BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBSA_SOLTU (Ribulose bisphosphate carboxylase small chain 2A, chloroplastic OS=Solanum tuberosum GN=RBCS-2A PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.046e-24
Identity = 48/69 (69.57%), Postives = 56/69 (81.16%), Query Frame = 2

Query:  377 QKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            + G+VYRE++ SPGYYDGRYWTMWKLPM+GCTDATQVL EV E  K YP +++RIIGFDN RQV    F
Sbjct:  104 EHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISF 172

HSP 2 Score: 24.2534 bits (51), Expect = 2.046e-24
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 3

Query:  564 KLQCISFLAAKPPG 605
            ++QCISF+A KP G
Sbjct:  166 QVQCISFIAYKPEG 179

BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS2_NICSY (Ribulose bisphosphate carboxylase small chain S41, chloroplastic OS=Nicotiana sylvestris PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.046e-24
Identity = 48/69 (69.57%), Postives = 56/69 (81.16%), Query Frame = 2

Query:  377 QKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            + G+VYRE++ SPGYYDGRYWTMWKLPM+GCTDATQVL EV E  K YP +++RIIGFDN RQV    F
Sbjct:  105 EHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISF 173

HSP 2 Score: 24.2534 bits (51), Expect = 2.046e-24
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 3

Query:  564 KLQCISFLAAKPPG 605
            ++QCISF+A KP G
Sbjct:  167 QVQCISFIAYKPEG 180

BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS1_NICSY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Nicotiana sylvestris GN=RBCS PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.046e-24
Identity = 48/69 (69.57%), Postives = 56/69 (81.16%), Query Frame = 2

Query:  377 QKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            + G+VYRE++ SPGYYDGRYWTMWKLPM+GCTDATQVL EV E  K YP +++RIIGFDN RQV    F
Sbjct:  104 EHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISF 172

HSP 2 Score: 24.2534 bits (51), Expect = 2.046e-24
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 3

Query:  564 KLQCISFLAAKPPG 605
            ++QCISF+A KP G
Sbjct:  166 QVQCISFIAYKPEG 179

BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS4_SOYBN (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Glycine max GN=RBCS-4 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.048e-24
Identity = 48/70 (68.57%), Postives = 56/70 (80.00%), Query Frame = 2

Query:  374 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            L+ G+VYREH+ S GYYDGRYWTMWKLPM+GCTDA+QVLKE+ E    YP+ F+RIIGFDN RQV    F
Sbjct:  101 LEHGFVYREHNRSLGYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISF 170

HSP 2 Score: 25.0238 bits (53), Expect = 2.048e-24
Identity = 9/13 (69.23%), Postives = 12/13 (92.31%), Query Frame = 3

Query:  564 KLQCISFLAAKPP 602
            ++QCISF+A KPP
Sbjct:  164 QVQCISFIAYKPP 176

BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS1_FLAPR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Flaveria pringlei GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.049e-24
Identity = 47/70 (67.14%), Postives = 57/70 (81.43%), Query Frame = 2

Query:  374 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            L+ G+VYRE+  SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E  KEYP +++RIIGFDN RQV    F
Sbjct:   96 LEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISF 165

HSP 2 Score: 25.0238 bits (53), Expect = 2.049e-24
Identity = 9/14 (64.29%), Postives = 13/14 (92.86%), Query Frame = 3

Query:  564 KLQCISFLAAKPPG 605
            ++QCISF+A+KP G
Sbjct:  159 QVQCISFIASKPGG 172

BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS1_AMAHP (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Amaranthus hypochondriacus GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.662e-24
Identity = 49/70 (70.00%), Postives = 54/70 (77.14%), Query Frame = 2

Query:  374 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            L+  +VYRE+H SPGY DGRYWTMWKLPMYGCTD  QVL EV E  K YP +F+RIIGFDNKRQV    F
Sbjct:  105 LEHPFVYRENHRSPGYQDGRYWTMWKLPMYGCTDPAQVLNEVEEAKKAYPSAFIRIIGFDNKRQVQCVSF 174

HSP 2 Score: 23.8682 bits (50), Expect = 2.662e-24
Identity = 8/14 (57.14%), Postives = 12/14 (85.71%), Query Frame = 3

Query:  564 KLQCISFLAAKPPG 605
            ++QC+SF+A KP G
Sbjct:  168 QVQCVSFIAYKPAG 181

BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS_MANES (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Manihot esculenta PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.662e-24
Identity = 47/70 (67.14%), Postives = 53/70 (75.71%), Query Frame = 2

Query:  374 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            L+ G VYREH   PGYYDGRYWTMWKLPM+GCTDA QVLKE+ E+ K +P  + RIIGFDN RQV    F
Sbjct:  105 LEHGLVYREHARVPGYYDGRYWTMWKLPMFGCTDAAQVLKELDELIKHHPDGYARIIGFDNVRQVQCISF 174

HSP 2 Score: 28.1054 bits (61), Expect = 2.662e-24
Identity = 11/14 (78.57%), Postives = 13/14 (92.86%), Query Frame = 3

Query:  564 KLQCISFLAAKPPG 605
            ++QCISFLA KPPG
Sbjct:  168 QVQCISFLAYKPPG 181

The following BLAST results are available for this feature:

BLAST of EY702100 vs. ExPASy Swiss-Prot

BLAST of EY702100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108


Match Name	E-value	Identity	Description
RBS_TOBAC	2.046e-24	69.57	Ribulose bisphosphate carboxylase small chain, chl...	[more]
RBSC_SOLTU	2.046e-24	69.57	Ribulose bisphosphate carboxylase small chain 2C, ...	[more]
RBSB_SOLTU	2.046e-24	69.57	Ribulose bisphosphate carboxylase small chain 2B, ...	[more]
RBSA_SOLTU	2.046e-24	69.57	Ribulose bisphosphate carboxylase small chain 2A, ...	[more]
RBS2_NICSY	2.046e-24	69.57	Ribulose bisphosphate carboxylase small chain S41,...	[more]
RBS1_NICSY	2.046e-24	69.57	Ribulose bisphosphate carboxylase small chain, chl...	[more]
RBS4_SOYBN	2.048e-24	68.57	Ribulose bisphosphate carboxylase small chain 4, c...	[more]
RBS1_FLAPR	2.049e-24	67.14	Ribulose bisphosphate carboxylase small chain 1, c...	[more]
RBS1_AMAHP	2.662e-24	70.00	Ribulose bisphosphate carboxylase small chain 1, c...	[more]
RBS_MANES	2.662e-24	67.14	Ribulose bisphosphate carboxylase small chain, chl...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-701-001-A12-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY702100 ID=EY702100; Name=EY702100; organism=Citrus sinensis; type=EST; length=890bp
GGGGGGGGGGGGGGGGGGGGNTTTTTTTTATNTAATGGTNNNNNNNNNNN
NNNNNNNNNNNNNNNTTCGTCGACCCACGCGTCCGGGATTCCCTGCTCGG
AATTCGAGTTGGAGGTCATTTCTCTCTCTCTCTCTCTCTCTCTCTGTCTC
TCTTAATATATACTATTATTTTGACGGAACCTTATCTATGTGCTTTAGGA
GAAAAATTACACATGTCATGAATCTATTGGTCAGAGATATCCATTCAATA
TCAAAACCTGCATTAACAATTGCTTACTTAAAATCTAAGCTTTTGGGTTA
AGCGGATTTTATCAGGCAAATGGGTGGTGATATTTGATTTTTTTTTTTTT
GTTTTTTCTTTTGGGTGGCGTGACTGCAGAAAGGATGGGTGTACCGTGAG
CACCACAGCTCACCAGGATACTACGATGGACGCTACTGGACAATGTGGAA
GCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTTG
GGGAGGTCCATAAGGAATACCCACATTCATTCGTCCGAATTATCGGATTT
GACAACAAGCGTCAAGTTGCAGTGCATCAGTTTCCTTGCTGCCAAGCCAC
CAGGCGTCTAGGCTCCCCATTAAATCTGCGTAACCACCCATGCCATATTG
TTGATTATAATTAAGCGGAACCCCCATAATGATCATTCGATCAATGGGGG
TTCCGTTTAGCGTCAATTTGCACTTAAGGCTGCTGTCGTGGCTGGTCAAA
TTTTTTTGGTTTTCTCCCCGAACTGGGCCTTTTTTTCTTTTAAAAACATT
TTAATAAATGGAATCGCTAAAAAAGAAGACAAAAAAGAAACTATTTCAAA
TGAACATTTCCTTCCTTTATCTTTTACATCTAATCCAGCT