EY702100

Overview
NameEY702100
Unique NameEY702100
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY702100_ssr121 microsatellite EY702100_ssr121:121..144. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS2_MESCR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-2 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.801e-22
Identity = 45/67 (67.16%), Postives = 53/67 (79.10%), Query Frame = 2
Query:  383 GWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            G+VYREH ++PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E  K YP +F RIIGFDN RQV    F
Sbjct:  104 GFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFTRIIGFDNVRQVQCISF 170          

HSP 2 Score: 22.3274 bits (46), Expect = 1.801e-22
Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 3
Query:  564 KLQCISFLAAKP 599
            ++QCISF+A KP
Sbjct:  164 QVQCISFIAYKP 175          
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS5_FRIAG (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Fritillaria agrestis GN=RBCS5 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 8.739e-22
Identity = 47/77 (61.04%), Postives = 58/77 (75.32%), Query Frame = 2
Query:  362 WVA*LQ---KGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            WV  L+   +G+V R+++ SPGYYDGRYWTMWKLPM+GCT A QV+KE  E  KEYP +F+R+IGFDN RQV    F
Sbjct:   97 WVPCLEFSLEGFVSRDNNKSPGYYDGRYWTMWKLPMFGCTGAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSF 173          

HSP 2 Score: 20.7866 bits (42), Expect = 8.739e-22
Identity = 6/12 (50.00%), Postives = 10/12 (83.33%), Query Frame = 3
Query:  564 KLQCISFLAAKP 599
            ++QC+SF+  KP
Sbjct:  167 QVQCVSFIVEKP 178          
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS_SILPR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Silene pratensis GN=RBCS PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.138e-21
Identity = 46/65 (70.77%), Postives = 51/65 (78.46%), Query Frame = 2
Query:  389 VYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            VYRE++ SPGYYDGRYWTMWKLPM+GCTDA+QV  EV E    YP + VRIIGFDNKRQV    F
Sbjct:  107 VYRENNKSPGYYDGRYWTMWKLPMFGCTDASQVAAEVVECKNAYPDAHVRIIGFDNKRQVQCISF 171          

HSP 2 Score: 22.3274 bits (46), Expect = 1.138e-21
Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 3
Query:  564 KLQCISFLAAKP 599
            ++QCISF+A KP
Sbjct:  165 QVQCISFIAYKP 176          
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS_MAIZE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zea mays GN=RBCS PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.483e-21
Identity = 43/67 (64.18%), Postives = 51/67 (76.12%), Query Frame = 2
Query:  383 GWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            G+VYRE+ +SP YYDGRYWTMWKLPM+GC DATQV KE+ E  K YP +F R+IGFDN +Q     F
Sbjct:   95 GFVYRENSTSPCYYDGRYWTMWKLPMFGCNDATQVYKELQEAIKSYPDAFHRVIGFDNIKQTQCVSF 161          

HSP 2 Score: 26.1794 bits (56), Expect = 1.483e-21
Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 3
Query:  570 QCISFLAAKPPG 605
            QC+SF+A KPPG
Sbjct:  157 QCVSFIAYKPPG 168          
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS1_SPIOL (Ribulose bisphosphate carboxylase small chain OS=Spinacia oleracea GN=RBCS PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.704e-21
Identity = 44/70 (62.86%), Postives = 53/70 (75.71%), Query Frame = 2
Query:  374 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            ++ G+VYREH  SPGYYDGRYWTMWKLPM+G TD  QV+ EV EV K  P +FVR IGF++KR+V    F
Sbjct:   46 VKDGFVYREHDKSPGYYDGRYWTMWKLPMFGGTDPAQVVNEVEEVKKAPPDAFVRFIGFNDKREVQCISF 115          

HSP 2 Score: 24.2534 bits (51), Expect = 5.704e-21
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 3
Query:  564 KLQCISFLAAKPPG 605
            ++QCISF+A KP G
Sbjct:  109 EVQCISFIAYKPAG 122          
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS1_PEA (Ribulose bisphosphate carboxylase small chain, chloroplastic (Fragment) OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.818e-21
Identity = 46/70 (65.71%), Postives = 53/70 (75.71%), Query Frame = 2
Query:  374 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            L KG+VY EH+ SP YYDGRYWTMWKLPM+G TD  QV+KEV EV   YP +FVR+IGF+N RQV    F
Sbjct:   59 LLKGFVYGEHNKSPRYYDGRYWTMWKLPMFGTTDPAQVVKEVDEVVAAYPEAFVRVIGFNNVRQVQCISF 128          
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS_LARLA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.512e-20
Identity = 42/69 (60.87%), Postives = 53/69 (76.81%), Query Frame = 2
Query:  377 QKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            + G + R + +SPGYYDGRYW MWKLPM+GCT+A+QVL EV E  K YP++F+R+IGFDN RQV    F
Sbjct:  113 EDGEIKRVYGNSPGYYDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPNAFIRVIGFDNVRQVQCISF 181          

HSP 2 Score: 20.7866 bits (42), Expect = 4.512e-20
Identity = 7/12 (58.33%), Postives = 10/12 (83.33%), Query Frame = 3
Query:  564 KLQCISFLAAKP 599
            ++QCISF+  KP
Sbjct:  175 QVQCISFIVHKP 186          
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS_PINTH (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.532e-20
Identity = 44/77 (57.14%), Postives = 57/77 (74.03%), Query Frame = 2
Query:  362 WVA*LQ---KGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            WV  L+   +G + R+++ SPGYYDGRYW MWKLPM+GCT+A+QV+ EV E  K YP +F+R+IGFDN RQV    F
Sbjct:   89 WVPCLEFDLEGSISRKYNRSPGYYDGRYWVMWKLPMFGCTEASQVINEVRECAKAYPKAFIRVIGFDNVRQVQCISF 165          

HSP 2 Score: 20.7866 bits (42), Expect = 4.532e-20
Identity = 7/12 (58.33%), Postives = 10/12 (83.33%), Query Frame = 3
Query:  564 KLQCISFLAAKP 599
            ++QCISF+  KP
Sbjct:  159 QVQCISFIVHKP 170          
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS_SACHY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Saccharum hybrid GN=RBCS PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.244e-17
Identity = 43/71 (60.56%), Postives = 52/71 (73.24%), Query Frame = 2
Query:  362 WVA*LQ---KGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQ 565
            WV  L+   +G+VYRE+ +SP YYDGRYWTMWKLPM+GCTDA+QV KE+ E    YP     I+GFDN RQ
Sbjct:   84 WVPCLEFSKEGFVYRENSTSPCYYDGRYWTMWKLPMFGCTDASQVYKELQEAIASYP-ELRAILGFDNIRQ 153          
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS_MARPA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.526e-16
Identity = 41/75 (54.67%), Postives = 50/75 (66.67%), Query Frame = 2
Query:  380 KGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEY-PHSFVRIIGFDNKRQVAVHQFPCCQAT 601
            +G V RE  + PGYYDGRYWTMWKLPM+GCTD+  VL+E+ E  K Y    ++R +GFDN RQV    F   Q T
Sbjct:  105 QGTVTREGSTMPGYYDGRYWTMWKLPMFGCTDSASVLREIEECKKLYGKKCYIRCLGFDNTRQVQCASFIVHQPT 179          
The following BLAST results are available for this feature:
BLAST of EY702100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
RBS2_MESCR1.801e-2267.16Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS5_FRIAG8.739e-2261.04Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS_SILPR1.138e-2170.77Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MAIZE1.483e-2164.18Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_SPIOL5.704e-2162.86Ribulose bisphosphate carboxylase small chain OS=S... [more]
RBS1_PEA7.818e-2165.71Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_LARLA4.512e-2060.87Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_PINTH4.532e-2057.14Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_SACHY5.244e-1760.56Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MARPA1.526e-1654.67Ribulose bisphosphate carboxylase small chain, chl... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-001-A12-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702100 ID=EY702100; Name=EY702100; organism=Citrus sinensis; type=EST; length=890bp
GGGGGGGGGGGGGGGGGGGGNTTTTTTTTATNTAATGGTNNNNNNNNNNN
NNNNNNNNNNNNNNNTTCGTCGACCCACGCGTCCGGGATTCCCTGCTCGG
AATTCGAGTTGGAGGTCATTTCTCTCTCTCTCTCTCTCTCTCTCTGTCTC
TCTTAATATATACTATTATTTTGACGGAACCTTATCTATGTGCTTTAGGA
GAAAAATTACACATGTCATGAATCTATTGGTCAGAGATATCCATTCAATA
TCAAAACCTGCATTAACAATTGCTTACTTAAAATCTAAGCTTTTGGGTTA
AGCGGATTTTATCAGGCAAATGGGTGGTGATATTTGATTTTTTTTTTTTT
GTTTTTTCTTTTGGGTGGCGTGACTGCAGAAAGGATGGGTGTACCGTGAG
CACCACAGCTCACCAGGATACTACGATGGACGCTACTGGACAATGTGGAA
GCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTTG
GGGAGGTCCATAAGGAATACCCACATTCATTCGTCCGAATTATCGGATTT
GACAACAAGCGTCAAGTTGCAGTGCATCAGTTTCCTTGCTGCCAAGCCAC
CAGGCGTCTAGGCTCCCCATTAAATCTGCGTAACCACCCATGCCATATTG
TTGATTATAATTAAGCGGAACCCCCATAATGATCATTCGATCAATGGGGG
TTCCGTTTAGCGTCAATTTGCACTTAAGGCTGCTGTCGTGGCTGGTCAAA
TTTTTTTGGTTTTCTCCCCGAACTGGGCCTTTTTTTCTTTTAAAAACATT
TTAATAAATGGAATCGCTAAAAAAGAAGACAAAAAAGAAACTATTTCAAA
TGAACATTTCCTTCCTTTATCTTTTACATCTAATCCAGCT
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