EY702100
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS2_MESCR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-2 PE=2 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 1.801e-22 Identity = 45/67 (67.16%), Postives = 53/67 (79.10%), Query Frame = 2 Query: 383 GWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583 G+VYREH ++PGYYDGRYWTMWKLPM+GCTD +QV+ E+ E K YP +F RIIGFDN RQV F Sbjct: 104 GFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFTRIIGFDNVRQVQCISF 170 HSP 2 Score: 22.3274 bits (46), Expect = 1.801e-22 Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 3 Query: 564 KLQCISFLAAKP 599 ++QCISF+A KP Sbjct: 164 QVQCISFIAYKP 175
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS5_FRIAG (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Fritillaria agrestis GN=RBCS5 PE=2 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 8.739e-22 Identity = 47/77 (61.04%), Postives = 58/77 (75.32%), Query Frame = 2 Query: 362 WVA*LQ---KGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583 WV L+ +G+V R+++ SPGYYDGRYWTMWKLPM+GCT A QV+KE E KEYP +F+R+IGFDN RQV F Sbjct: 97 WVPCLEFSLEGFVSRDNNKSPGYYDGRYWTMWKLPMFGCTGAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSF 173 HSP 2 Score: 20.7866 bits (42), Expect = 8.739e-22 Identity = 6/12 (50.00%), Postives = 10/12 (83.33%), Query Frame = 3 Query: 564 KLQCISFLAAKP 599 ++QC+SF+ KP Sbjct: 167 QVQCVSFIVEKP 178
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS_SILPR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Silene pratensis GN=RBCS PE=2 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 1.138e-21 Identity = 46/65 (70.77%), Postives = 51/65 (78.46%), Query Frame = 2 Query: 389 VYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583 VYRE++ SPGYYDGRYWTMWKLPM+GCTDA+QV EV E YP + VRIIGFDNKRQV F Sbjct: 107 VYRENNKSPGYYDGRYWTMWKLPMFGCTDASQVAAEVVECKNAYPDAHVRIIGFDNKRQVQCISF 171 HSP 2 Score: 22.3274 bits (46), Expect = 1.138e-21 Identity = 8/12 (66.67%), Postives = 11/12 (91.67%), Query Frame = 3 Query: 564 KLQCISFLAAKP 599 ++QCISF+A KP Sbjct: 165 QVQCISFIAYKP 176
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS_MAIZE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zea mays GN=RBCS PE=1 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 1.483e-21 Identity = 43/67 (64.18%), Postives = 51/67 (76.12%), Query Frame = 2 Query: 383 GWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583 G+VYRE+ +SP YYDGRYWTMWKLPM+GC DATQV KE+ E K YP +F R+IGFDN +Q F Sbjct: 95 GFVYRENSTSPCYYDGRYWTMWKLPMFGCNDATQVYKELQEAIKSYPDAFHRVIGFDNIKQTQCVSF 161 HSP 2 Score: 26.1794 bits (56), Expect = 1.483e-21 Identity = 9/12 (75.00%), Postives = 11/12 (91.67%), Query Frame = 3 Query: 570 QCISFLAAKPPG 605 QC+SF+A KPPG Sbjct: 157 QCVSFIAYKPPG 168
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS1_SPIOL (Ribulose bisphosphate carboxylase small chain OS=Spinacia oleracea GN=RBCS PE=1 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 5.704e-21 Identity = 44/70 (62.86%), Postives = 53/70 (75.71%), Query Frame = 2 Query: 374 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583 ++ G+VYREH SPGYYDGRYWTMWKLPM+G TD QV+ EV EV K P +FVR IGF++KR+V F Sbjct: 46 VKDGFVYREHDKSPGYYDGRYWTMWKLPMFGGTDPAQVVNEVEEVKKAPPDAFVRFIGFNDKREVQCISF 115 HSP 2 Score: 24.2534 bits (51), Expect = 5.704e-21 Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 3 Query: 564 KLQCISFLAAKPPG 605 ++QCISF+A KP G Sbjct: 109 EVQCISFIAYKPAG 122
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS1_PEA (Ribulose bisphosphate carboxylase small chain, chloroplastic (Fragment) OS=Pisum sativum PE=2 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 7.818e-21 Identity = 46/70 (65.71%), Postives = 53/70 (75.71%), Query Frame = 2 Query: 374 LQKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583 L KG+VY EH+ SP YYDGRYWTMWKLPM+G TD QV+KEV EV YP +FVR+IGF+N RQV F Sbjct: 59 LLKGFVYGEHNKSPRYYDGRYWTMWKLPMFGTTDPAQVVKEVDEVVAAYPEAFVRVIGFNNVRQVQCISF 128
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS_LARLA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 4.512e-20 Identity = 42/69 (60.87%), Postives = 53/69 (76.81%), Query Frame = 2 Query: 377 QKGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583 + G + R + +SPGYYDGRYW MWKLPM+GCT+A+QVL EV E K YP++F+R+IGFDN RQV F Sbjct: 113 EDGEIKRVYGNSPGYYDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPNAFIRVIGFDNVRQVQCISF 181 HSP 2 Score: 20.7866 bits (42), Expect = 4.512e-20 Identity = 7/12 (58.33%), Postives = 10/12 (83.33%), Query Frame = 3 Query: 564 KLQCISFLAAKP 599 ++QCISF+ KP Sbjct: 175 QVQCISFIVHKP 186
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS_PINTH (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 4.532e-20 Identity = 44/77 (57.14%), Postives = 57/77 (74.03%), Query Frame = 2 Query: 362 WVA*LQ---KGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583 WV L+ +G + R+++ SPGYYDGRYW MWKLPM+GCT+A+QV+ EV E K YP +F+R+IGFDN RQV F Sbjct: 89 WVPCLEFDLEGSISRKYNRSPGYYDGRYWVMWKLPMFGCTEASQVINEVRECAKAYPKAFIRVIGFDNVRQVQCISF 165 HSP 2 Score: 20.7866 bits (42), Expect = 4.532e-20 Identity = 7/12 (58.33%), Postives = 10/12 (83.33%), Query Frame = 3 Query: 564 KLQCISFLAAKP 599 ++QCISF+ KP Sbjct: 159 QVQCISFIVHKP 170
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS_SACHY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Saccharum hybrid GN=RBCS PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 5.244e-17 Identity = 43/71 (60.56%), Postives = 52/71 (73.24%), Query Frame = 2 Query: 362 WVA*LQ---KGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQ 565 WV L+ +G+VYRE+ +SP YYDGRYWTMWKLPM+GCTDA+QV KE+ E YP I+GFDN RQ Sbjct: 84 WVPCLEFSKEGFVYRENSTSPCYYDGRYWTMWKLPMFGCTDASQVYKELQEAIASYP-ELRAILGFDNIRQ 153
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS_MARPA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.526e-16 Identity = 41/75 (54.67%), Postives = 50/75 (66.67%), Query Frame = 2 Query: 380 KGWVYREHHSSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEY-PHSFVRIIGFDNKRQVAVHQFPCCQAT 601 +G V RE + PGYYDGRYWTMWKLPM+GCTD+ VL+E+ E K Y ++R +GFDN RQV F Q T Sbjct: 105 QGTVTREGSTMPGYYDGRYWTMWKLPMFGCTDSASVLREIEECKKLYGKKCYIRCLGFDNTRQVQCASFIVHQPT 179 The following BLAST results are available for this feature:
BLAST of EY702100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 108
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Sequences
The
following sequences are available for this feature:
EST sequence >EY702100 ID=EY702100; Name=EY702100; organism=Citrus sinensis; type=EST; length=890bpback to top |