EY702100

Overview
NameEY702100
Unique NameEY702100
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY702100_ssr121 microsatellite EY702100_ssr121:121..144. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS_EUGGR (Ribulose bisphosphate carboxylase small chains, chloroplastic OS=Euglena gracilis GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.572e-16
Identity = 34/59 (57.63%), Postives = 45/59 (76.27%), Query Frame = 2
Query:  407 SSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            ++ GYYD RYWTMWKLPM+GCTDA+QVL+E+ E  + YP  +VR+  FD+ +QV V  F
Sbjct:  197 TAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISF 255          

HSP 2 Score: 84.7297 bits (208), Expect = 7.572e-16
Identity = 34/59 (57.63%), Postives = 45/59 (76.27%), Query Frame = 2
Query:  407 SSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            ++ GYYD RYWTMWKLPM+GCTDA+QVL+E+ E  + YP  +VR+  FD+ +QV V  F
Sbjct:  341 TAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISF 399          

HSP 3 Score: 84.7297 bits (208), Expect = 7.572e-16
Identity = 34/59 (57.63%), Postives = 45/59 (76.27%), Query Frame = 2
Query:  407 SSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            ++ GYYD RYWTMWKLPM+GCTDA+QVL+E+ E  + YP  +VR+  FD+ +QV V  F
Sbjct:  628 TAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISF 686          

HSP 4 Score: 84.7297 bits (208), Expect = 7.572e-16
Identity = 34/59 (57.63%), Postives = 45/59 (76.27%), Query Frame = 2
Query:  407 SSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            ++ GYYD RYWTMWKLPM+GCTDA+QVL+E+ E  + YP  +VR+  FD+ +QV V  F
Sbjct:  771 TAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISF 829          

HSP 5 Score: 84.7297 bits (208), Expect = 7.572e-16
Identity = 34/59 (57.63%), Postives = 45/59 (76.27%), Query Frame = 2
Query:  407 SSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            ++ GYYD RYWTMWKLPM+GCTDA+QVL+E+ E  + YP  +VR+  FD+ +QV V  F
Sbjct: 1059 TAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISF 1117          

HSP 6 Score: 84.7297 bits (208), Expect = 7.572e-16
Identity = 34/59 (57.63%), Postives = 45/59 (76.27%), Query Frame = 2
Query:  407 SSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            ++ GYYD RYWTMWKLPM+GCTDA+QVL+E+ E  + YP  +VR+  FD+ +QV V  F
Sbjct: 1203 TAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISF 1261          

HSP 7 Score: 82.8037 bits (203), Expect = 2.877e-15
Identity = 33/59 (55.93%), Postives = 44/59 (74.58%), Query Frame = 2
Query:  407 SSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            ++ GYYD  YWTMWKLPM+GCTDA+QVL+E+ E  + YP  +VR+  FD+ +QV V  F
Sbjct:  484 TAAGYYDNHYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISF 542          

HSP 8 Score: 80.4925 bits (197), Expect = 1.428e-14
Identity = 34/59 (57.63%), Postives = 45/59 (76.27%), Query Frame = 2
Query:  407 SSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            ++ GYYD RYWTMWKLPM+GCTDA+QVL+E+ E  + YP  +VR + FD+ +QV V  F
Sbjct:  916 TAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVR-LAFDSVKQVQVISF 973          
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS_CHLMO (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Chlamydomonas moewusii GN=RBCS PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.181e-14
Identity = 31/53 (58.49%), Postives = 41/53 (77.36%), Query Frame = 2
Query:  410 SPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQV 568
            S GYYD RYWTMWKLPM+GCTD +QVL+EV      +P+ ++R++ FDN +QV
Sbjct:   92 SAGYYDNRYWTMWKLPMFGCTDPSQVLREVSACQVAFPNVYIRLVAFDNVKQV 144          
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS2_CHLRE (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-2 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.062e-13
Identity = 30/55 (54.55%), Postives = 41/55 (74.55%), Query Frame = 2
Query:  419 YYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            YYD RYWTMWKLPM+GC D  QVL+E+    K +P ++VR++ FDN++QV +  F
Sbjct:  112 YYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGF 166          
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS1_CHLRE (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.062e-13
Identity = 30/55 (54.55%), Postives = 41/55 (74.55%), Query Frame = 2
Query:  419 YYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            YYD RYWTMWKLPM+GC D  QVL+E+    K +P ++VR++ FDN++QV +  F
Sbjct:  112 YYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGF 166          
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS3_ACEAT (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia acetabulum GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.836e-13
Identity = 30/55 (54.55%), Postives = 40/55 (72.73%), Query Frame = 2
Query:  419 YYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            Y D RYWTMWKLPM+GCTDA+QVL E+    K +P +++R++ FD  RQV +  F
Sbjct:  109 YQDNRYWTMWKLPMFGCTDASQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGF 163          
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS3_ACECL (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia cliftonii GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.746e-12
Identity = 30/58 (51.72%), Postives = 40/58 (68.97%), Query Frame = 2
Query:  410 SPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            S  Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD  RQV +  F
Sbjct:  107 SSTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGF 164          
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS2_ACECL (Ribulose bisphosphate carboxylase small chain 2 (Fragment) OS=Acetabularia cliftonii GN=RBCS-2 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.746e-12
Identity = 30/58 (51.72%), Postives = 40/58 (68.97%), Query Frame = 2
Query:  410 SPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            S  Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD  RQV +  F
Sbjct:   10 SSTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGF 67          
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS5_ACECL (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia cliftonii GN=RBCS-5 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.280e-12
Identity = 29/55 (52.73%), Postives = 39/55 (70.91%), Query Frame = 2
Query:  419 YYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD  RQV +  F
Sbjct:  111 YQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGF 165          
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS4_ACECL (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia cliftonii GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.280e-12
Identity = 29/55 (52.73%), Postives = 39/55 (70.91%), Query Frame = 2
Query:  419 YYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD  RQV +  F
Sbjct:  109 YQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGF 163          
BLAST of EY702100 vs. ExPASy Swiss-Prot
Match: RBS2_ACEAT (Ribulose bisphosphate carboxylase small chain 2, chloroplastic (Fragment) OS=Acetabularia acetabulum GN=RBCS-2 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.280e-12
Identity = 29/55 (52.73%), Postives = 39/55 (70.91%), Query Frame = 2
Query:  419 YYDGRYWTMWKLPMYGCTDATQVLKEVGEVHKEYPHSFVRIIGFDNKRQVAVHQF 583
            Y D RYWTMWKLPM+GCTD +QVL E+    K +P +++R++ FD  RQV +  F
Sbjct:  100 YQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGF 154          
The following BLAST results are available for this feature:
BLAST of EY702100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
RBS_EUGGR7.572e-1657.63Ribulose bisphosphate carboxylase small chains, ch... [more]
RBS_CHLMO3.181e-1458.49Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_CHLRE2.062e-1354.55Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS1_CHLRE2.062e-1354.55Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS3_ACEAT7.836e-1354.55Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS3_ACECL1.746e-1251.72Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS2_ACECL1.746e-1251.72Ribulose bisphosphate carboxylase small chain 2 (F... [more]
RBS5_ACECL2.280e-1252.73Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS4_ACECL2.280e-1252.73Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS2_ACEAT2.280e-1252.73Ribulose bisphosphate carboxylase small chain 2, c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-001-A12-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702100 ID=EY702100; Name=EY702100; organism=Citrus sinensis; type=EST; length=890bp
GGGGGGGGGGGGGGGGGGGGNTTTTTTTTATNTAATGGTNNNNNNNNNNN
NNNNNNNNNNNNNNNTTCGTCGACCCACGCGTCCGGGATTCCCTGCTCGG
AATTCGAGTTGGAGGTCATTTCTCTCTCTCTCTCTCTCTCTCTCTGTCTC
TCTTAATATATACTATTATTTTGACGGAACCTTATCTATGTGCTTTAGGA
GAAAAATTACACATGTCATGAATCTATTGGTCAGAGATATCCATTCAATA
TCAAAACCTGCATTAACAATTGCTTACTTAAAATCTAAGCTTTTGGGTTA
AGCGGATTTTATCAGGCAAATGGGTGGTGATATTTGATTTTTTTTTTTTT
GTTTTTTCTTTTGGGTGGCGTGACTGCAGAAAGGATGGGTGTACCGTGAG
CACCACAGCTCACCAGGATACTACGATGGACGCTACTGGACAATGTGGAA
GCTGCCCATGTATGGGTGCACAGATGCAACCCAGGTTTTGAAGGAGGTTG
GGGAGGTCCATAAGGAATACCCACATTCATTCGTCCGAATTATCGGATTT
GACAACAAGCGTCAAGTTGCAGTGCATCAGTTTCCTTGCTGCCAAGCCAC
CAGGCGTCTAGGCTCCCCATTAAATCTGCGTAACCACCCATGCCATATTG
TTGATTATAATTAAGCGGAACCCCCATAATGATCATTCGATCAATGGGGG
TTCCGTTTAGCGTCAATTTGCACTTAAGGCTGCTGTCGTGGCTGGTCAAA
TTTTTTTGGTTTTCTCCCCGAACTGGGCCTTTTTTTCTTTTAAAAACATT
TTAATAAATGGAATCGCTAAAAAAGAAGACAAAAAAGAAACTATTTCAAA
TGAACATTTCCTTCCTTTATCTTTTACATCTAATCCAGCT
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