EY680411

Overview
NameEY680411
Unique NameEY680411
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length828
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680411 vs. ExPASy Swiss-Prot
Match: PSAL_ANASP (Photosystem I reaction center subunit XI OS=Anabaena sp. (strain PCC 7120) GN=psaL PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.152e-17
Identity = 38/76 (50.00%), Postives = 54/76 (71.05%), Query Frame = 1
Query:  463 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLFVGPFVKAGPLK---NTKIAG 681
            +V+ P   DP  G+LETP+ +SPL+ W+++NLPAYR  ++P  RG+EVG+AHG+   GPF K GPL+   N  +AG
Sbjct:   19 EVVFPAGRDPQWGNLETPVNASPLVKWFINNLPAYRPGLTPFRRGLEVGMAHGYFLFGPFAKLGPLRDAANANLAG 94          
BLAST of EY680411 vs. ExPASy Swiss-Prot
Match: PSAL_TRIEI (Photosystem I reaction center subunit XI OS=Trichodesmium erythraeum (strain IMS101) GN=psaL PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.049e-16
Identity = 36/70 (51.43%), Postives = 51/70 (72.86%), Query Frame = 1
Query:  469 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLFVGPFVKAGPLKNTKIA 678
            +QP  GDPF+G L TPI+ S     ++ NLP YR  +SP+LRG+EVG+AHG+  VGP+ K GPL+++ +A
Sbjct:   10 VQPYKGDPFVGHLSTPISDSDFTRAFIGNLPIYRPGLSPILRGLEVGMAHGYFIVGPWTKLGPLRDSAVA 79          
BLAST of EY680411 vs. ExPASy Swiss-Prot
Match: PSAL_SYNY3 (Photosystem I reaction center subunit XI OS=Synechocystis sp. (strain PCC 6803) GN=psaL PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.049e-16
Identity = 36/70 (51.43%), Postives = 52/70 (74.29%), Query Frame = 1
Query:  463 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLFVGPFVKAGPLKNTK 672
            QV+Q  NGDPF+G L TPI+ S     ++ NLPAYR  +SP+LRG+EVG+AHG+  +GP+   GPL++++
Sbjct:    6 QVVQAYNGDPFVGHLSTPISDSAFTRTFIGNLPAYRKGLSPILRGLEVGMAHGYFLIGPWTLLGPLRDSE 75          
BLAST of EY680411 vs. ExPASy Swiss-Prot
Match: PSAL_PORYE (Photosystem I reaction center subunit XI OS=Porphyra yezoensis GN=psaL PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.370e-16
Identity = 37/72 (51.39%), Postives = 52/72 (72.22%), Query Frame = 1
Query:  463 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLFVGPFVKAGPLKNTKIA 678
            + I+P N DPF+G+L TP+++S        NLPAYR  +SPLLRG+E+G+AHG+  +GPF K GPL+ T +A
Sbjct:    3 EFIKPYNDDPFVGNLSTPVSTSSFSKGTSRNLPAYRRGLSPLLRGLEIGMAHGYFLIGPFDKLGPLRGTDVA 74          
BLAST of EY680411 vs. ExPASy Swiss-Prot
Match: PSAL_MICAN (Photosystem I reaction center subunit XI OS=Microcystis aeruginosa (strain NIES-843) GN=psaL PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.883e-16
Identity = 37/72 (51.39%), Postives = 53/72 (73.61%), Query Frame = 1
Query:  463 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLFVGPFVKAGPLKNTKIA 678
            QV+ P N DPFIG L TPI++S     ++ NLPAYR  ++P+LRG+EVG+AHG+   GP+V  GPL++++ A
Sbjct:    8 QVVTPYNDDPFIGHLATPISASGFTKAFIGNLPAYRPGLAPILRGLEVGMAHGYFLGGPWVVLGPLRDSEYA 79          
BLAST of EY680411 vs. ExPASy Swiss-Prot
Match: PSAL_PROM4 (Photosystem I reaction center subunit XI OS=Prochlorococcus marinus (strain MIT 9211) GN=psaL PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.086e-13
Identity = 34/70 (48.57%), Postives = 49/70 (70.00%), Query Frame = 1
Query:  469 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLFVGPFVKAGPLKNTKIA 678
            ++P++ DPF+G+LETP+ S      +++NLP YR+ +SP  RG+EVG A G+L  GPF   GPL+NT  A
Sbjct:   39 VKPVS-DPFVGNLETPVNSGYFTKAFINNLPFYRSGISPNFRGLEVGAAFGYLLYGPFAMTGPLRNTDFA 107          
BLAST of EY680411 vs. ExPASy Swiss-Prot
Match: PSAL_SYNE7 (Photosystem I reaction center subunit XI OS=Synechococcus elongatus (strain PCC 7942) GN=psaL PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.126e-13
Identity = 37/72 (51.39%), Postives = 47/72 (65.28%), Query Frame = 1
Query:  484 GDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLFVGPFVKAGPLKNTKIAGPPRSLA 699
            G P IG+L TPI SSP    +++ LP YR  +S   RG+E+G+AHGFL  GPF   GPL+NT+ AG    LA
Sbjct:   10 GTPEIGNLATPINSSPFTRTFINALPIYRRGLSSNRRGLEIGMAHGFLLYGPFSILGPLRNTETAGSAGLLA 81          
BLAST of EY680411 vs. ExPASy Swiss-Prot
Match: PSAL_CYAA5 (Photosystem I reaction center subunit XI OS=Cyanothece sp. (strain ATCC 51142) GN=psaL PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.126e-13
Identity = 37/73 (50.68%), Postives = 48/73 (65.75%), Query Frame = 1
Query:  484 GDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLFVGPFVKAGPLKNTKIAGPPRSLAA 702
            GDP IG+L TP+ SS L   ++ NLPAYR  +S   RG+EVG+AHG+   GPF   GPL+NT+ A     L+A
Sbjct:    8 GDPQIGNLATPVNSSRLSLAFIRNLPAYRRGLSANRRGLEVGMAHGYFLYGPFAILGPLRNTEYASTGGLLSA 80          
BLAST of EY680411 vs. ExPASy Swiss-Prot
Match: PSAL_SYNP2 (Photosystem I reaction center subunit XI OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=psaL PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.493e-12
Identity = 32/66 (48.48%), Postives = 43/66 (65.15%), Query Frame = 1
Query:  484 GDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLFVGPFVKAGPLKNTKIAG 681
            GDP +G+L TPI +S     +++NLP YR  +S   RG+EVG+AHG+   GPF   GPL+N   AG
Sbjct:    8 GDPQVGNLATPINASAFSKAFINNLPGYRQGLSAQRRGLEVGMAHGYFLYGPFALLGPLRNADFAG 73          
BLAST of EY680411 vs. ExPASy Swiss-Prot
Match: PSAL_SYNP6 (Photosystem I reaction center subunit XI OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=psaL PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.016e-11
Identity = 35/72 (48.61%), Postives = 44/72 (61.11%), Query Frame = 1
Query:  484 GDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLFVGPFVKAGPLKNTKIAGPPRSLA 699
            G P IG L TP  SSP    +++ LP YR  +S   RG+E+G+AHGFL  GP    GPL+NT+ AG    LA
Sbjct:    9 GTPEIGDLATPTNSSPFTRTFINALPIYRRGLSSNRRGLEIGMAHGFLLYGPLSILGPLRNTETAGSAGLLA 80          
The following BLAST results are available for this feature:
BLAST of EY680411 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
PSAL_ANASP6.152e-1750.00Photosystem I reaction center subunit XI OS=Anabae... [more]
PSAL_TRIEI1.049e-1651.43Photosystem I reaction center subunit XI OS=Tricho... [more]
PSAL_SYNY31.049e-1651.43Photosystem I reaction center subunit XI OS=Synech... [more]
PSAL_PORYE1.370e-1651.39Photosystem I reaction center subunit XI OS=Porphy... [more]
PSAL_MICAN8.883e-1651.39Photosystem I reaction center subunit XI OS=Microc... [more]
PSAL_PROM41.086e-1348.57Photosystem I reaction center subunit XI OS=Prochl... [more]
PSAL_SYNE74.126e-1351.39Photosystem I reaction center subunit XI OS=Synech... [more]
PSAL_CYAA54.126e-1350.68Photosystem I reaction center subunit XI OS=Cyanot... [more]
PSAL_SYNP23.493e-1248.48Photosystem I reaction center subunit XI OS=Synech... [more]
PSAL_SYNP61.016e-1148.61Photosystem I reaction center subunit XI OS=Synech... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-010-G08-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680411 ID=EY680411; Name=EY680411; organism=Citrus sinensis; type=EST; length=828bp
TACAAAGCCGAGCTCTTGGTAGAAACAGAAGTCTTTTAACAAACACAATC
TCAAATGGCTTCTGTTTCTTCTCCAATGGCCAGCCAGCTCAAAAGTAGCT
TTACTTCACCAGTTTCCAGGAGCCTGCTTACTCCAAGGGGTATCTCTGGA
TCTCCATTCAGGGTTGTTCCCTCCAAGAGAAGCCCTCGTTTCATTGTCAA
AGCTATCCAATCTGAAAAGGTAACACATTGATGAAATATAAATGTTTATT
CGGAATTCATAATCATCATCCTTTTCCTTTTTAAGAATGATAGTTATGGT
TTTGCTTTTGAAATTGAAATGGACTCATTAGTTATCAAGGTAGAGTGTTG
CGGTTGGCAAGACTTCTGTTGTTGTGCTTTCAAGATTAAATTAGAAGTAT
AGAGCAGTTATAAATATACCCTTTTTAAGTAATTTGATTTGCACTTTGTG
CAGCCAACTTACCAAGTTATTCAGCCAATCAATGGTGATCCATTCATTGG
AAGCTTGGAGACTCCAATTACATCAAGTCCATTGATTGCATGGTACCTCT
CAAATCTACCAGCTTATCGGACGGCAGTCAGCCCACTACTGAGAGGAGTA
GAGGTGGGGTTGGCCCATGGATTCCTCTTTGTGGGTCCATTTGTTAAGGC
AGGGCCATTGAAAAACACAAAAATAGCAGGACCACCAAGGTCATTGGCAG
CCGGGTGGCCCTGTTGTGATCCCTCACATTTGCTTGGCAATCCTAGGGAA
TTGCTTCATTCAAGGAAGGGAAAACCCTTCCCTGGGCCCCGGCTTAAATT
TGACCGGAAAGGAAAAAGGGACCCGAAA
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