EY720403

Overview
NameEY720403
Unique NameEY720403
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length845
Libraries
Library NameType
Sweet orange fruit, development stadium (4 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY720403 vs. ExPASy Swiss-Prot
Match: ISPH_GLOVI (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Gloeobacter violaceus GN=ispH PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.613e-47
Identity = 94/155 (60.65%), Postives = 112/155 (72.26%), Query Frame = 1
Query:    1 NVQIVDTTCPWVSKVWTTVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIILKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSEGCDPDVDLVEVGIANHPTMLKGETEEMGKLLEKTMMRRLGVENVNEHFISFTTICDATHDRQDA 465
            N  IVDTTCPWVS VW  V K+ + ++TSIIHGKY HEETVATAS A +Y+++ N++EA+ VCDYIL G        + AFL  F  A  EG DPD DLV VGIAN  TMLKGETE +GKL E+TMMRR G  N+ +HF+S  TICDAT +RQDA
Sbjct:  143 NCVIVDTTCPWVSAVWNRVGKYDRAEFTSIIHGKYQHEETVATASRARRYLVVLNLEEAQQVCDYILHG------GDRRAFLAHFGMAACEGFDPDRDLVRVGIANQTTMLKGETERIGKLFERTMMRRYGPANLADHFMSHDTICDATQERQDA 291          
BLAST of EY720403 vs. ExPASy Swiss-Prot
Match: ISPH_PROMM (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain MIT 9313) GN=ispH PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 7.604e-47
Identity = 88/152 (57.89%), Postives = 114/152 (75.00%), Query Frame = 1
Query:   10 IVDTTCPWVSKVWTTVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIILKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSEGCDPDVDLVEVGIANHPTMLKGETEEMGKLLEKTMMRRLGVENVNEHFISFTTICDATHDRQDA 465
            I+DTTCPWVSKVW TVEKHKK ++TSIIHGK  HEET+AT+SFAG Y+++ ++ EA+ V DYILG         + AF+++F KA S   DPD DL  +G+AN  TMLK ETEE+G+L E+TM+R+ G   +N+HF+SF TICDAT +RQ A
Sbjct:  152 IIDTTCPWVSKVWHTVEKHKKQEFTSIIHGKVKHEETLATSSFAGTYLVVLDLDEAQLVADYILG------QGDRAAFMKRFAKACSANFDPDQDLQRLGVANQTTMLKSETEEIGRLFERTMLRKYGPIELNKHFLSFNTICDATEERQQA 297          
BLAST of EY720403 vs. ExPASy Swiss-Prot
Match: ISPH_PROM3 (4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Prochlorococcus marinus (strain MIT 9303) GN=ispH PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 7.604e-47
Identity = 88/152 (57.89%), Postives = 114/152 (75.00%), Query Frame = 1
Query:   10 IVDTTCPWVSKVWTTVEKHKKGDYTSIIHGKYSHEETVATASFAGKYIILKNMKEAEYVCDYILGGELNGSSSTKEAFLEKFKKAVSEGCDPDVDLVEVGIANHPTMLKGETEEMGKLLEKTMMRRLGVENVNEHFISFTTICDATHDRQDA 465
            I+DTTCPWVSKVW TVEKHKK ++TSIIHGK  HEET+AT+SFAG Y+++ ++ EA+ V DYILG         + AF+++F KA S   DPD DL  +G+AN  TMLK ETEE+G+L E+TM+R+ G   +N+HF+SF TICDAT +RQ A
Sbjct:  152 IIDTTCPWVSKVWHTVEKHKKQEFTSIIHGKVKHEETLATSSFAGTYLVVLDLDEAQLVADYILG------QGDRAAFMKRFAKACSANFDPDQDLQRLGVANQTTMLKSETEEIGRLFERTMLRKYGPIELNKHFLSFNTICDATEERQQA 297          
The following BLAST results are available for this feature:
BLAST of EY720403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
ISPH_GLOVI2.613e-4760.654-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROMM7.604e-4757.894-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]
ISPH_PROM37.604e-4757.894-hydroxy-3-methylbut-2-enyl diphosphate reductase... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-703-008-H12-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY720403 ID=EY720403; Name=EY720403; organism=Citrus sinensis; type=EST; length=845bp
AATGTACAGATTGTTGATACAACTTGCCCTTGGGTGTCTAAGGTCTGGAC
TACTGTGGAGAAGCACAAGAAGGGAGACTACACTTCAATTATTCACGGTA
AATATTCTCATGAGGAAACTGTAGCAACTGCATCGTTTGCAGGAAAGTAT
ATCATACTCAAGAATATGAAAGAGGCTGAGTATGTGTGTGATTACATTCT
TGGGGGTGAACTTAATGGATCTAGCTCAACAAAAGAAGCATTCCTTGAGA
AATTCAAGAAAGCTGTTTCAGAAGGGTGTGATCCAGATGTTGACCTGGTA
GAAGTGGGCATTGCAAACCACCCTACAATGCTCAAGGGTGAGACAGAAGA
GATGGGAAAACTACTCGAGAAGACCATGATGCGTAGATTGGGAGTTGAAA
ATGTCAATGAACACTTCATAAGCTTCACCACCATTTGTGATGCTACTCAC
GACCGACAGGATGCATGTATAGGATGGTTGAGGAACAGGTCGATCCCCTC
CCGGTGGTCGGCTGCGTGGACCGCGACCGATAGGGGACGGCCTCGGGAGA
TGGGGGAAAGCGGCGGGTGGCCGCACGCGGGATGTCCCCTCCCACGAGGG
GGCGCCGCGGGAGCCGCGCCGCGGGCGGGGCGGGCCGCCCAGCGCGGGGG
CGAAGGCGCGCAGCGCGCCACGCCCGCCCCCCGCCCCCCCCCCGGCCCAG
CCGCGCCGGCGGGGGGCGGCGAGGGGGCGGCCGGGACGGGCGGGAGGCGG
GGCCCGGGGCTGGCGGCCCGGGGCCGGGCCCAGCCGGGCCGGCGGCGCCG
GGGCCGGGCGGGCTCGGGGGAGGGCGGCGGGTGGGCGAGGCGCGC
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