DR908612

Overview
NameDR908612
Unique NameDR908612
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_LACSA (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Lactuca sativa GN=ndhG PE=3 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 2.513e-15
Identity = 30/36 (83.33%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    +ANQIIEQDLISNSQQIGIHLSTDFFLPFE
Sbjct:  122 GIIWTTKANQIIEQDLISNSQQIGIHLSTDFFLPFE 157

HSP 2 Score: 39.6614 bits (91), Expect = 2.513e-15
Identity = 17/18 (94.44%), Postives = 17/18 (94.44%), Query Frame = 3 
Query:    3 SLITTILDTSWYGIIWTT 56
            SLITTI DTSWYGIIWTT
Sbjct:  110 SLITTIPDTSWYGIIWTT 127
[Close]
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_GUIAB (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Guizotia abyssinica GN=ndhG PE=3 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 2.513e-15
Identity = 30/36 (83.33%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    +ANQIIEQDLISNSQQIGIHLSTDFFLPFE
Sbjct:  122 GIIWTTKANQIIEQDLISNSQQIGIHLSTDFFLPFE 157

HSP 2 Score: 39.6614 bits (91), Expect = 2.513e-15
Identity = 17/18 (94.44%), Postives = 17/18 (94.44%), Query Frame = 3 
Query:    3 SLITTILDTSWYGIIWTT 56
            SLITTI DTSWYGIIWTT
Sbjct:  110 SLITTIPDTSWYGIIWTT 127
[Close]
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_PANGI (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Panax ginseng GN=ndhG PE=3 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 2.513e-15
Identity = 29/36 (80.56%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    ++NQIIEQDLISNSQQIGIHLSTDFFLPFE
Sbjct:  122 GIIWTTKSNQIIEQDLISNSQQIGIHLSTDFFLPFE 157

HSP 2 Score: 40.817 bits (94), Expect = 2.513e-15
Identity = 18/20 (90.00%), Postives = 18/20 (90.00%), Query Frame = 3 
Query:    3 SLITTILDTSWYGIIWTTPS 62
            SLITTI DTSWYGIIWTT S
Sbjct:  110 SLITTIPDTSWYGIIWTTKS 129
[Close]
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_EUCGG (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=ndhG PE=3 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 2.513e-15
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    ++NQIIEQDLI NSQQIGIHLSTDFFLPFE
Sbjct:  122 GIIWTTKSNQIIEQDLIGNSQQIGIHLSTDFFLPFE 157

HSP 2 Score: 42.3578 bits (98), Expect = 2.513e-15
Identity = 18/20 (90.00%), Postives = 19/20 (95.00%), Query Frame = 3 
Query:    3 SLITTILDTSWYGIIWTTPS 62
            SL+TTILDTSWYGIIWTT S
Sbjct:  110 SLMTTILDTSWYGIIWTTKS 129
[Close]
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_TOBAC (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Nicotiana tabacum GN=ndhG PE=3 SV=2)

HSP 1 Score: 61.2326 bits (147), Expect = 3.266e-15
Identity = 29/36 (80.56%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    R+NQIIEQD ISNSQQIGIHLSTDFFLPFE
Sbjct:  122 GIIWTTRSNQIIEQDFISNSQQIGIHLSTDFFLPFE 157

HSP 2 Score: 40.817 bits (94), Expect = 3.266e-15
Identity = 18/20 (90.00%), Postives = 18/20 (90.00%), Query Frame = 3 
Query:    3 SLITTILDTSWYGIIWTTPS 62
            SLITTI DTSWYGIIWTT S
Sbjct:  110 SLITTISDTSWYGIIWTTRS 129
[Close]
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_NICTO (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Nicotiana tomentosiformis GN=ndhG PE=3 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 3.266e-15
Identity = 29/36 (80.56%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    R+NQIIEQD ISNSQQIGIHLSTDFFLPFE
Sbjct:  122 GIIWTTRSNQIIEQDFISNSQQIGIHLSTDFFLPFE 157

HSP 2 Score: 40.817 bits (94), Expect = 3.266e-15
Identity = 18/20 (90.00%), Postives = 18/20 (90.00%), Query Frame = 3 
Query:    3 SLITTILDTSWYGIIWTTPS 62
            SLITTI DTSWYGIIWTT S
Sbjct:  110 SLITTISDTSWYGIIWTTRS 129
[Close]
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_NICSY (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Nicotiana sylvestris GN=ndhG PE=3 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 3.266e-15
Identity = 29/36 (80.56%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    R+NQIIEQD ISNSQQIGIHLSTDFFLPFE
Sbjct:  122 GIIWTTRSNQIIEQDFISNSQQIGIHLSTDFFLPFE 157

HSP 2 Score: 40.817 bits (94), Expect = 3.266e-15
Identity = 18/20 (90.00%), Postives = 18/20 (90.00%), Query Frame = 3 
Query:    3 SLITTILDTSWYGIIWTTPS 62
            SLITTI DTSWYGIIWTT S
Sbjct:  110 SLITTISDTSWYGIIWTTRS 129
[Close]
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_DAUCA (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Daucus carota GN=ndhG PE=3 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 3.266e-15
Identity = 28/36 (77.78%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    ++NQI+EQDLISNSQQIGIHLSTDFFLPFE
Sbjct:  122 GIIWTTKSNQIVEQDLISNSQQIGIHLSTDFFLPFE 157

HSP 2 Score: 40.817 bits (94), Expect = 3.266e-15
Identity = 18/20 (90.00%), Postives = 18/20 (90.00%), Query Frame = 3 
Query:    3 SLITTILDTSWYGIIWTTPS 62
            SLITTI DTSWYGIIWTT S
Sbjct:  110 SLITTIPDTSWYGIIWTTKS 129
[Close]
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_HELAN (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Helianthus annuus GN=ndhG PE=3 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 4.244e-15
Identity = 29/36 (80.56%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    +ANQIIEQDLISNSQQIGIHLSTDFF+PFE
Sbjct:  122 GIIWTTKANQIIEQDLISNSQQIGIHLSTDFFIPFE 157

HSP 2 Score: 39.6614 bits (91), Expect = 4.244e-15
Identity = 17/18 (94.44%), Postives = 17/18 (94.44%), Query Frame = 3 
Query:    3 SLITTILDTSWYGIIWTT 56
            SLITTI DTSWYGIIWTT
Sbjct:  110 SLITTIPDTSWYGIIWTT 127
[Close]
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_GOSBA (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Gossypium barbadense GN=ndhG PE=3 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 4.244e-15
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    R+NQIIEQDLI NSQQIGIHL+TDFFLPFE
Sbjct:  122 GIIWTTRSNQIIEQDLIGNSQQIGIHLATDFFLPFE 157

HSP 2 Score: 41.5874 bits (96), Expect = 4.244e-15
Identity = 18/20 (90.00%), Postives = 19/20 (95.00%), Query Frame = 3 
Query:    3 SLITTILDTSWYGIIWTTPS 62
            SLI+TILDTSWYGIIWTT S
Sbjct:  110 SLISTILDTSWYGIIWTTRS 129
The following BLAST results are available for this feature:
BLAST of DR908612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 160
Match NameE-valueIdentityDescription
NU6C_LACSA2.513e-1583.33NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_GUIAB2.513e-1583.33NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_PANGI2.513e-1580.56NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_EUCGG2.513e-1577.78NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_TOBAC3.266e-1580.56NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_NICTO3.266e-1580.56NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_NICSY3.266e-1580.56NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_DAUCA3.266e-1577.78NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_HELAN4.244e-1580.56NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_GOSBA4.244e-1577.78NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16740 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-11_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908612 ID=DR908612; Name=DR908612; organism=Citrus sinensis; type=EST; length=607bp
TTTCGCTAATCACTACTATTCTCGATACATCGTGGTACGGGATTATTTGG
ACTACACCGAGCCAACCAGATTATTGAACAAGATTTGATAAGTAATAGTC
AACAAATTGGAATTCATTTATCAACAGACTTTTTTCTTCCATTTGAACTC
GTTTCAATAATTCTTTTAGTTGCTTTAATAGGTGCAATTGCCGTGGCGCG
TCAATAACAAATCTTTATAACTAGGAACAGCAATCCCAATTCGACTTTTT
ATGTGTTATCACATTCATTATGTGTTATCACATTCATTTCCCTTAAATTC
TTGTAAAGTCTAGTTGAATACTATTCACAGATCAATAGAAAATCAAAATA
GAATTTTTTTTATTCGATCTATTACCAAATGGATTCTTTTGTTCCGTACC
TGGTATATTCTAAGCAACCAAATCACTTGCATTATTATTATTGTTCAGAT
TGAAATGAATCGAAATTGGTACGGAGTTGGTTAATGATGCTCGAGCATGT
ACTTGTTTTGAGTGCCTATTTATTTTCGATTGGCATCTATGGCTTGATTA
CCAGCCGAAATATGGGTCGGGCCCTGATGTGCCTTGAACTTATACTAAAT
GCAGTTA
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