DR908612 | Citrus Genome Database

Overview


Name	DR908612
Unique Name	DR908612
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	607

Libraries


Library Name	Type
Citrus sinensis phloem	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU4LC_GUIAB (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Guizotia abyssinica GN=ndhE PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.008e-12
Identity = 37/41 (90.24%), Postives = 38/41 (92.68%), Query Frame = 1

Query:  484 MMLEHVLVLSAYLFSIGIYGLITSRNMGRALMCLELILNAV 606
            MMLEHVLVLSAYLFS  +YGLITSRNM RALMCLELILNAV
Sbjct:    1 MMLEHVLVLSAYLFSFVLYGLITSRNMVRALMCLELILNAV 41

BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU4LC_GOSBA (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Gossypium barbadense GN=ndhE PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.008e-12
Identity = 37/41 (90.24%), Postives = 38/41 (92.68%), Query Frame = 1

Query:  484 MMLEHVLVLSAYLFSIGIYGLITSRNMGRALMCLELILNAV 606
            MMLEH+ VLSAYLFSI IYGLITSRNM RALMCLELILNAV
Sbjct:    1 MMLEHIPVLSAYLFSIDIYGLITSRNMVRALMCLELILNAV 41

BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_WHEAT (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Triticum aestivum GN=ndhG PE=3 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 2.271e-12
Identity = 24/36 (66.67%), Postives = 30/36 (83.33%), Query Frame = 1

Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    R+NQI+EQ LI+N QQIGIHL+TDF+LPFE
Sbjct:  122 GILWTTRSNQIVEQGLINNVQQIGIHLATDFYLPFE 157

HSP 2 Score: 38.5058 bits (88), Expect = 2.271e-12
Identity = 16/20 (80.00%), Postives = 18/20 (90.00%), Query Frame = 3

Query:    3 SLITTILDTSWYGIIWTTPS 62
            SL+TTI DTSWYGI+WTT S
Sbjct:  110 SLMTTIPDTSWYGILWTTRS 129

BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_SORBI (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Sorghum bicolor GN=ndhG PE=3 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 2.271e-12
Identity = 24/36 (66.67%), Postives = 30/36 (83.33%), Query Frame = 1

Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    R+NQI+EQ LI+N QQIGIHL+TDF+LPFE
Sbjct:  122 GILWTTRSNQIVEQGLINNVQQIGIHLATDFYLPFE 157

HSP 2 Score: 38.5058 bits (88), Expect = 2.271e-12
Identity = 16/20 (80.00%), Postives = 18/20 (90.00%), Query Frame = 3

Query:    3 SLITTILDTSWYGIIWTTPS 62
            SL+TTI DTSWYGI+WTT S
Sbjct:  110 SLMTTIPDTSWYGILWTTRS 129

BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_SACOF (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Saccharum officinarum GN=ndhG PE=3 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 2.271e-12
Identity = 24/36 (66.67%), Postives = 30/36 (83.33%), Query Frame = 1

Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    R+NQI+EQ LI+N QQIGIHL+TDF+LPFE
Sbjct:  122 GILWTTRSNQIVEQGLINNVQQIGIHLATDFYLPFE 157

HSP 2 Score: 38.5058 bits (88), Expect = 2.271e-12
Identity = 16/20 (80.00%), Postives = 18/20 (90.00%), Query Frame = 3

Query:    3 SLITTILDTSWYGIIWTTPS 62
            SL+TTI DTSWYGI+WTT S
Sbjct:  110 SLMTTIPDTSWYGILWTTRS 129

BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_SACHY (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Saccharum hybrid GN=ndhG PE=3 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 2.271e-12
Identity = 24/36 (66.67%), Postives = 30/36 (83.33%), Query Frame = 1

Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    R+NQI+EQ LI+N QQIGIHL+TDF+LPFE
Sbjct:  122 GILWTTRSNQIVEQGLINNVQQIGIHLATDFYLPFE 157

HSP 2 Score: 38.5058 bits (88), Expect = 2.271e-12
Identity = 16/20 (80.00%), Postives = 18/20 (90.00%), Query Frame = 3

Query:    3 SLITTILDTSWYGIIWTTPS 62
            SL+TTI DTSWYGI+WTT S
Sbjct:  110 SLMTTIPDTSWYGILWTTRS 129

BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_ORYSJ (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Oryza sativa subsp. japonica GN=ndhG PE=3 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 2.271e-12
Identity = 24/36 (66.67%), Postives = 30/36 (83.33%), Query Frame = 1

Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    R+NQI+EQ LI+N QQIGIHL+TDF+LPFE
Sbjct:  122 GILWTTRSNQIVEQGLINNVQQIGIHLATDFYLPFE 157

HSP 2 Score: 38.5058 bits (88), Expect = 2.271e-12
Identity = 16/20 (80.00%), Postives = 18/20 (90.00%), Query Frame = 3

Query:    3 SLITTILDTSWYGIIWTTPS 62
            SL+TTI DTSWYGI+WTT S
Sbjct:  110 SLMTTIPDTSWYGILWTTRS 129

BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_ORYSI (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Oryza sativa subsp. indica GN=ndhG PE=3 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 2.271e-12
Identity = 24/36 (66.67%), Postives = 30/36 (83.33%), Query Frame = 1

Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    R+NQI+EQ LI+N QQIGIHL+TDF+LPFE
Sbjct:  122 GILWTTRSNQIVEQGLINNVQQIGIHLATDFYLPFE 157

HSP 2 Score: 38.5058 bits (88), Expect = 2.271e-12
Identity = 16/20 (80.00%), Postives = 18/20 (90.00%), Query Frame = 3

Query:    3 SLITTILDTSWYGIIWTTPS 62
            SL+TTI DTSWYGI+WTT S
Sbjct:  110 SLMTTIPDTSWYGILWTTRS 129

BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_ORYSA (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Oryza sativa GN=ndhG PE=3 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 2.271e-12
Identity = 24/36 (66.67%), Postives = 30/36 (83.33%), Query Frame = 1

Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    R+NQI+EQ LI+N QQIGIHL+TDF+LPFE
Sbjct:  122 GILWTTRSNQIVEQGLINNVQQIGIHLATDFYLPFE 157

HSP 2 Score: 38.5058 bits (88), Expect = 2.271e-12
Identity = 16/20 (80.00%), Postives = 18/20 (90.00%), Query Frame = 3

Query:    3 SLITTILDTSWYGIIWTTPS 62
            SL+TTI DTSWYGI+WTT S
Sbjct:  110 SLMTTIPDTSWYGILWTTRS 129

BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_ORYNI (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Oryza nivara GN=ndhG PE=3 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 2.271e-12
Identity = 24/36 (66.67%), Postives = 30/36 (83.33%), Query Frame = 1

Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    R+NQI+EQ LI+N QQIGIHL+TDF+LPFE
Sbjct:  122 GILWTTRSNQIVEQGLINNVQQIGIHLATDFYLPFE 157

HSP 2 Score: 38.5058 bits (88), Expect = 2.271e-12
Identity = 16/20 (80.00%), Postives = 18/20 (90.00%), Query Frame = 3

Query:    3 SLITTILDTSWYGIIWTTPS 62
            SL+TTI DTSWYGI+WTT S
Sbjct:  110 SLMTTIPDTSWYGILWTTRS 129

The following BLAST results are available for this feature:

BLAST of DR908612 vs. ExPASy Swiss-Prot

BLAST of DR908612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 160


Match Name	E-value	Identity	Description
NU4LC_GUIAB	2.008e-12	90.24	NAD(P)H-quinone oxidoreductase subunit 4L, chlorop...	[more]
NU4LC_GOSBA	2.008e-12	90.24	NAD(P)H-quinone oxidoreductase subunit 4L, chlorop...	[more]
NU6C_WHEAT	2.271e-12	66.67	NAD(P)H-quinone oxidoreductase subunit 6, chloropl...	[more]
NU6C_SORBI	2.271e-12	66.67	NAD(P)H-quinone oxidoreductase subunit 6, chloropl...	[more]
NU6C_SACOF	2.271e-12	66.67	NAD(P)H-quinone oxidoreductase subunit 6, chloropl...	[more]
NU6C_SACHY	2.271e-12	66.67	NAD(P)H-quinone oxidoreductase subunit 6, chloropl...	[more]
NU6C_ORYSJ	2.271e-12	66.67	NAD(P)H-quinone oxidoreductase subunit 6, chloropl...	[more]
NU6C_ORYSI	2.271e-12	66.67	NAD(P)H-quinone oxidoreductase subunit 6, chloropl...	[more]
NU6C_ORYSA	2.271e-12	66.67	NAD(P)H-quinone oxidoreductase subunit 6, chloropl...	[more]
NU6C_ORYNI	2.271e-12	66.67	NAD(P)H-quinone oxidoreductase subunit 6, chloropl...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_16740 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-11_H04 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DR908612 ID=DR908612; Name=DR908612; organism=Citrus sinensis; type=EST; length=607bp
TTTCGCTAATCACTACTATTCTCGATACATCGTGGTACGGGATTATTTGG
ACTACACCGAGCCAACCAGATTATTGAACAAGATTTGATAAGTAATAGTC
AACAAATTGGAATTCATTTATCAACAGACTTTTTTCTTCCATTTGAACTC
GTTTCAATAATTCTTTTAGTTGCTTTAATAGGTGCAATTGCCGTGGCGCG
TCAATAACAAATCTTTATAACTAGGAACAGCAATCCCAATTCGACTTTTT
ATGTGTTATCACATTCATTATGTGTTATCACATTCATTTCCCTTAAATTC
TTGTAAAGTCTAGTTGAATACTATTCACAGATCAATAGAAAATCAAAATA
GAATTTTTTTTATTCGATCTATTACCAAATGGATTCTTTTGTTCCGTACC
TGGTATATTCTAAGCAACCAAATCACTTGCATTATTATTATTGTTCAGAT
TGAAATGAATCGAAATTGGTACGGAGTTGGTTAATGATGCTCGAGCATGT
ACTTGTTTTGAGTGCCTATTTATTTTCGATTGGCATCTATGGCTTGATTA
CCAGCCGAAATATGGGTCGGGCCCTGATGTGCCTTGAACTTATACTAAAT
GCAGTTA