DR908612

Overview
NameDR908612
Unique NameDR908612
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU4LC_ORYSI (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Oryza sativa subsp. indica GN=ndhE PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.965e-12
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = 1
Query:  484 MMLEHVLVLSAYLFSIGIYGLITSRNMGRALMCLELILNAV 606
            MM EHVL LS YLFSIGIYGLITSRNM RAL+CLELILN++
Sbjct:    1 MMFEHVLFLSVYLFSIGIYGLITSRNMVRALICLELILNSI 41          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU4LC_ORYSA (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Oryza sativa GN=ndhE PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.965e-12
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = 1
Query:  484 MMLEHVLVLSAYLFSIGIYGLITSRNMGRALMCLELILNAV 606
            MM EHVL LS YLFSIGIYGLITSRNM RAL+CLELILN++
Sbjct:    1 MMFEHVLFLSVYLFSIGIYGLITSRNMVRALICLELILNSI 41          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU4LC_ORYNI (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Oryza nivara GN=ndhE PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.965e-12
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = 1
Query:  484 MMLEHVLVLSAYLFSIGIYGLITSRNMGRALMCLELILNAV 606
            MM EHVL LS YLFSIGIYGLITSRNM RAL+CLELILN++
Sbjct:    1 MMFEHVLFLSVYLFSIGIYGLITSRNMVRALICLELILNSI 41          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU4LC_HORVU (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Hordeum vulgare GN=ndhE PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.965e-12
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = 1
Query:  484 MMLEHVLVLSAYLFSIGIYGLITSRNMGRALMCLELILNAV 606
            MM EHVL LS YLFSIGIYGLITSRNM RAL+CLELILN++
Sbjct:    1 MMFEHVLFLSVYLFSIGIYGLITSRNMVRALICLELILNSI 41          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU4LC_BRADI (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Brachypodium distachyon GN=ndhE PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.965e-12
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = 1
Query:  484 MMLEHVLVLSAYLFSIGIYGLITSRNMGRALMCLELILNAV 606
            MM EHVL LS YLFSIGIYGLITSRNM RAL+CLELILN++
Sbjct:    1 MMFEHVLFLSVYLFSIGIYGLITSRNMVRALICLELILNSI 41          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU4LC_AGRST (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Agrostis stolonifera GN=ndhE PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.965e-12
Identity = 34/41 (82.93%), Postives = 37/41 (90.24%), Query Frame = 1
Query:  484 MMLEHVLVLSAYLFSIGIYGLITSRNMGRALMCLELILNAV 606
            MM EHVL LS YLFSIGIYGLITSRNM RAL+CLELILN++
Sbjct:    1 MMFEHVLFLSVYLFSIGIYGLITSRNMVRALICLELILNSI 41          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU4LC_MARPO (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Marchantia polymorpha GN=ndhE PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.459e-11
Identity = 32/40 (80.00%), Postives = 36/40 (90.00%), Query Frame = 1
Query:  487 MLEHVLVLSAYLFSIGIYGLITSRNMGRALMCLELILNAV 606
            MLEH+L LSA+LF IG++GLITSRNM RALMCLELI NAV
Sbjct:    1 MLEHILTLSAFLFCIGVFGLITSRNMVRALMCLELIFNAV 40          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU4LC_PHYPA (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Physcomitrella patens GN=ndhE PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.435e-11
Identity = 33/40 (82.50%), Postives = 35/40 (87.50%), Query Frame = 1
Query:  487 MLEHVLVLSAYLFSIGIYGLITSRNMGRALMCLELILNAV 606
            MLEH+L L AYLF IGI+GLITSRNM RALMCLELI NAV
Sbjct:    1 MLEHILSLGAYLFCIGIFGLITSRNMVRALMCLELIFNAV 40          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU4LC_PELHO (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Pelargonium hortorum GN=ndhE PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.435e-11
Identity = 34/41 (82.93%), Postives = 38/41 (92.68%), Query Frame = 1
Query:  484 MMLEHVLVLSAYLFSIGIYGLITSRNMGRALMCLELILNAV 606
            M+LEHVLVLS++LFSIGIYGLITSRNM RALM LEL+LN V
Sbjct:    1 MILEHVLVLSSFLFSIGIYGLITSRNMIRALMSLELMLNGV 41          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU4LC_MAIZE (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Zea mays GN=ndhE PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.435e-11
Identity = 33/41 (80.49%), Postives = 36/41 (87.80%), Query Frame = 1
Query:  484 MMLEHVLVLSAYLFSIGIYGLITSRNMGRALMCLELILNAV 606
            MM E VL LS YLFSIGIYGLITSRNM RAL+CLELILN++
Sbjct:    1 MMFERVLFLSVYLFSIGIYGLITSRNMVRALICLELILNSI 41          
The following BLAST results are available for this feature:
BLAST of DR908612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 160
Match NameE-valueIdentityDescription
NU4LC_ORYSI9.965e-1282.93NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]
NU4LC_ORYSA9.965e-1282.93NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]
NU4LC_ORYNI9.965e-1282.93NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]
NU4LC_HORVU9.965e-1282.93NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]
NU4LC_BRADI9.965e-1282.93NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]
NU4LC_AGRST9.965e-1282.93NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]
NU4LC_MARPO6.459e-1180.00NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]
NU4LC_PHYPA8.435e-1182.50NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]
NU4LC_PELHO8.435e-1182.93NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]
NU4LC_MAIZE8.435e-1180.49NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16740 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-11_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908612 ID=DR908612; Name=DR908612; organism=Citrus sinensis; type=EST; length=607bp
TTTCGCTAATCACTACTATTCTCGATACATCGTGGTACGGGATTATTTGG
ACTACACCGAGCCAACCAGATTATTGAACAAGATTTGATAAGTAATAGTC
AACAAATTGGAATTCATTTATCAACAGACTTTTTTCTTCCATTTGAACTC
GTTTCAATAATTCTTTTAGTTGCTTTAATAGGTGCAATTGCCGTGGCGCG
TCAATAACAAATCTTTATAACTAGGAACAGCAATCCCAATTCGACTTTTT
ATGTGTTATCACATTCATTATGTGTTATCACATTCATTTCCCTTAAATTC
TTGTAAAGTCTAGTTGAATACTATTCACAGATCAATAGAAAATCAAAATA
GAATTTTTTTTATTCGATCTATTACCAAATGGATTCTTTTGTTCCGTACC
TGGTATATTCTAAGCAACCAAATCACTTGCATTATTATTATTGTTCAGAT
TGAAATGAATCGAAATTGGTACGGAGTTGGTTAATGATGCTCGAGCATGT
ACTTGTTTTGAGTGCCTATTTATTTTCGATTGGCATCTATGGCTTGATTA
CCAGCCGAAATATGGGTCGGGCCCTGATGTGCCTTGAACTTATACTAAAT
GCAGTTA
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