DR908612

Overview
NameDR908612
Unique NameDR908612
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_RANMC (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Ranunculus macranthus GN=ndhG PE=3 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 5.511e-15
Identity = 29/36 (80.56%), Postives = 32/36 (88.89%), Query Frame = 1
Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    R+NQIIEQDLI+NSQQIGIHLSTDFFLPFE
Sbjct:  122 GIVWTTRSNQIIEQDLINNSQQIGIHLSTDFFLPFE 157          

HSP 2 Score: 40.0466 bits (92), Expect = 5.511e-15
Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 3
Query:    3 SLITTILDTSWYGIIWTTPS 62
            SLITTI DTSWYGI+WTT S
Sbjct:  110 SLITTIPDTSWYGIVWTTRS 129          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_AETGR (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Aethionema grandiflora GN=ndhG PE=3 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 5.516e-15
Identity = 29/36 (80.56%), Postives = 31/36 (86.11%), Query Frame = 1
Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    R NQI+EQDLISNSQQIGIHLSTDFFLPFE
Sbjct:  122 GVIWTTRLNQILEQDLISNSQQIGIHLSTDFFLPFE 157          

HSP 2 Score: 40.4318 bits (93), Expect = 5.516e-15
Identity = 16/18 (88.89%), Postives = 18/18 (100.00%), Query Frame = 3
Query:    3 SLITTILDTSWYGIIWTT 56
            SLI+TILDTSWYG+IWTT
Sbjct:  110 SLISTILDTSWYGVIWTT 127          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_AETCO (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Aethionema cordifolium GN=ndhG PE=3 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 5.516e-15
Identity = 29/36 (80.56%), Postives = 31/36 (86.11%), Query Frame = 1
Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    R NQI+EQDLISNSQQIGIHLSTDFFLPFE
Sbjct:  122 GVIWTTRLNQILEQDLISNSQQIGIHLSTDFFLPFE 157          

HSP 2 Score: 40.4318 bits (93), Expect = 5.516e-15
Identity = 16/18 (88.89%), Postives = 18/18 (100.00%), Query Frame = 3
Query:    3 SLITTILDTSWYGIIWTT 56
            SLI+TILDTSWYG+IWTT
Sbjct:  110 SLISTILDTSWYGVIWTT 127          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_SOLTU (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Solanum tuberosum GN=ndhG PE=3 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 5.516e-15
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 1
Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    R+NQIIEQD +SNSQQIGIHLSTDFFLPFE
Sbjct:  122 GIIWTTRSNQIIEQDFLSNSQQIGIHLSTDFFLPFE 157          

HSP 2 Score: 40.817 bits (94), Expect = 5.516e-15
Identity = 18/20 (90.00%), Postives = 18/20 (90.00%), Query Frame = 3
Query:    3 SLITTILDTSWYGIIWTTPS 62
            SLITTI DTSWYGIIWTT S
Sbjct:  110 SLITTISDTSWYGIIWTTRS 129          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_SOLLC (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Solanum lycopersicum GN=ndhG PE=3 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 5.516e-15
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 1
Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    R+NQIIEQD +SNSQQIGIHLSTDFFLPFE
Sbjct:  122 GIIWTTRSNQIIEQDFLSNSQQIGIHLSTDFFLPFE 157          

HSP 2 Score: 40.817 bits (94), Expect = 5.516e-15
Identity = 18/20 (90.00%), Postives = 18/20 (90.00%), Query Frame = 3
Query:    3 SLITTILDTSWYGIIWTTPS 62
            SLITTI DTSWYGIIWTT S
Sbjct:  110 SLITTISDTSWYGIIWTTRS 129          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_SOLBU (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Solanum bulbocastanum GN=ndhG PE=3 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 5.516e-15
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 1
Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    R+NQIIEQD +SNSQQIGIHLSTDFFLPFE
Sbjct:  122 GIIWTTRSNQIIEQDFLSNSQQIGIHLSTDFFLPFE 157          

HSP 2 Score: 40.817 bits (94), Expect = 5.516e-15
Identity = 18/20 (90.00%), Postives = 18/20 (90.00%), Query Frame = 3
Query:    3 SLITTILDTSWYGIIWTTPS 62
            SLITTI DTSWYGIIWTT S
Sbjct:  110 SLITTISDTSWYGIIWTTRS 129          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_ATRBE (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Atropa belladonna GN=ndhG PE=3 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 5.516e-15
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 1
Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    R+NQIIEQD +SNSQQIGIHLSTDFFLPFE
Sbjct:  122 GIIWTTRSNQIIEQDFLSNSQQIGIHLSTDFFLPFE 157          

HSP 2 Score: 40.817 bits (94), Expect = 5.516e-15
Identity = 18/20 (90.00%), Postives = 18/20 (90.00%), Query Frame = 3
Query:    3 SLITTILDTSWYGIIWTTPS 62
            SLITTI DTSWYGIIWTT S
Sbjct:  110 SLITTISDTSWYGIIWTTRS 129          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_PLAOC (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Platanus occidentalis GN=ndhG PE=3 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 7.168e-15
Identity = 29/36 (80.56%), Postives = 31/36 (86.11%), Query Frame = 1
Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    R+NQIIEQDLISN QQIGIHLSTDFFLPFE
Sbjct:  122 GVIWTTRSNQIIEQDLISNGQQIGIHLSTDFFLPFE 157          

HSP 2 Score: 40.0466 bits (92), Expect = 7.168e-15
Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 3
Query:    3 SLITTILDTSWYGIIWTTPS 62
            SLITTI DTSWYG+IWTT S
Sbjct:  110 SLITTIPDTSWYGVIWTTRS 129          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_LOTJA (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Lotus japonicus GN=ndhG PE=3 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 7.168e-15
Identity = 29/36 (80.56%), Postives = 31/36 (86.11%), Query Frame = 1
Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    R+NQIIEQDLIS SQQIGIHLSTDFFLPFE
Sbjct:  122 GIIWTTRSNQIIEQDLISTSQQIGIHLSTDFFLPFE 157          

HSP 2 Score: 40.4318 bits (93), Expect = 7.168e-15
Identity = 18/20 (90.00%), Postives = 18/20 (90.00%), Query Frame = 3
Query:    3 SLITTILDTSWYGIIWTTPS 62
            SLITTI DTSWYGIIWTT S
Sbjct:  110 SLITTIPDTSWYGIIWTTRS 129          
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_CARPA (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Carica papaya GN=ndhG PE=3 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 7.168e-15
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 1
Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    R NQI+EQDLIS+SQQIGIHLSTDFFLPFE
Sbjct:  122 GVIWTTRLNQILEQDLISSSQQIGIHLSTDFFLPFE 157          

HSP 2 Score: 41.9726 bits (97), Expect = 7.168e-15
Identity = 17/18 (94.44%), Postives = 18/18 (100.00%), Query Frame = 3
Query:    3 SLITTILDTSWYGIIWTT 56
            SLITTILDTSWYG+IWTT
Sbjct:  110 SLITTILDTSWYGVIWTT 127          
The following BLAST results are available for this feature:
BLAST of DR908612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 160
Match NameE-valueIdentityDescription
NU6C_RANMC5.511e-1580.56NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_AETGR5.516e-1580.56NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_AETCO5.516e-1580.56NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_SOLTU5.516e-1577.78NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_SOLLC5.516e-1577.78NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_SOLBU5.516e-1577.78NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_ATRBE5.516e-1577.78NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_PLAOC7.168e-1580.56NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_LOTJA7.168e-1580.56NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_CARPA7.168e-1577.78NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16740 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-11_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908612 ID=DR908612; Name=DR908612; organism=Citrus sinensis; type=EST; length=607bp
TTTCGCTAATCACTACTATTCTCGATACATCGTGGTACGGGATTATTTGG
ACTACACCGAGCCAACCAGATTATTGAACAAGATTTGATAAGTAATAGTC
AACAAATTGGAATTCATTTATCAACAGACTTTTTTCTTCCATTTGAACTC
GTTTCAATAATTCTTTTAGTTGCTTTAATAGGTGCAATTGCCGTGGCGCG
TCAATAACAAATCTTTATAACTAGGAACAGCAATCCCAATTCGACTTTTT
ATGTGTTATCACATTCATTATGTGTTATCACATTCATTTCCCTTAAATTC
TTGTAAAGTCTAGTTGAATACTATTCACAGATCAATAGAAAATCAAAATA
GAATTTTTTTTATTCGATCTATTACCAAATGGATTCTTTTGTTCCGTACC
TGGTATATTCTAAGCAACCAAATCACTTGCATTATTATTATTGTTCAGAT
TGAAATGAATCGAAATTGGTACGGAGTTGGTTAATGATGCTCGAGCATGT
ACTTGTTTTGAGTGCCTATTTATTTTCGATTGGCATCTATGGCTTGATTA
CCAGCCGAAATATGGGTCGGGCCCTGATGTGCCTTGAACTTATACTAAAT
GCAGTTA
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