DR908612

Overview
NameDR908612
Unique NameDR908612
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_MORIN (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Morus indica GN=ndhG PE=3 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 9.316e-15
Identity = 29/36 (80.56%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    R+NQIIE DLISNSQQIGIHLSTDFFLPFE
Sbjct:  122 GIIWTTRSNQIIEHDLISNSQQIGIHLSTDFFLPFE 157

HSP 2 Score: 39.6614 bits (91), Expect = 9.316e-15
Identity = 17/19 (89.47%), Postives = 17/19 (89.47%), Query Frame = 3 
Query:    6 LITTILDTSWYGIIWTTPS 62
            LITTI DTSWYGIIWTT S
Sbjct:  111 LITTITDTSWYGIIWTTRS 129
[Close]
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_LEPVR (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Lepidium virginicum GN=ndhG PE=3 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 9.316e-15
Identity = 29/36 (80.56%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    R NQI+EQDLISNSQQIGIHLSTDFFLPFE
Sbjct:  122 GVIWTTRLNQILEQDLISNSQQIGIHLSTDFFLPFE 157

HSP 2 Score: 39.6614 bits (91), Expect = 9.316e-15
Identity = 15/18 (83.33%), Postives = 18/18 (100.00%), Query Frame = 3 
Query:    3 SLITTILDTSWYGIIWTT 56
            SL++TILDTSWYG+IWTT
Sbjct:  110 SLLSTILDTSWYGVIWTT 127
[Close]
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_LOBMA (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Lobularia maritima GN=ndhG PE=3 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 9.316e-15
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    R NQ++EQDLISNSQQIGIHLSTDFFLPFE
Sbjct:  122 GVIWTTRLNQLLEQDLISNSQQIGIHLSTDFFLPFE 157

HSP 2 Score: 40.4318 bits (93), Expect = 9.316e-15
Identity = 16/18 (88.89%), Postives = 18/18 (100.00%), Query Frame = 3 
Query:    3 SLITTILDTSWYGIIWTT 56
            SLI+TILDTSWYG+IWTT
Sbjct:  110 SLISTILDTSWYGVIWTT 127
[Close]
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_NASOF (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Nasturtium officinale GN=ndhG PE=3 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 1.211e-14
Identity = 29/36 (80.56%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    R NQI+EQDLISNSQQIGIHLSTDFFLPFE
Sbjct:  122 GVIWTTRLNQILEQDLISNSQQIGIHLSTDFFLPFE 157

HSP 2 Score: 39.2762 bits (90), Expect = 1.211e-14
Identity = 15/18 (83.33%), Postives = 18/18 (100.00%), Query Frame = 3 
Query:    3 SLITTILDTSWYGIIWTT 56
            SL++TILDTSWYG+IWTT
Sbjct:  110 SLMSTILDTSWYGVIWTT 127
[Close]
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_BARVE (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Barbarea verna GN=ndhG PE=3 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 1.211e-14
Identity = 29/36 (80.56%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    R NQI+EQDLISNSQQIGIHLSTDFFLPFE
Sbjct:  122 GVIWTTRLNQILEQDLISNSQQIGIHLSTDFFLPFE 157

HSP 2 Score: 39.2762 bits (90), Expect = 1.211e-14
Identity = 15/18 (83.33%), Postives = 18/18 (100.00%), Query Frame = 3 
Query:    3 SLITTILDTSWYGIIWTT 56
            SL++TILDTSWYG+IWTT
Sbjct:  110 SLMSTILDTSWYGVIWTT 127
[Close]
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_AMBTC (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Amborella trichopoda GN=ndhG PE=3 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 1.572e-14
Identity = 28/36 (77.78%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    R+NQIIEQDL SN QQIGIHLSTDFFLPFE
Sbjct:  122 GIIWTTRSNQIIEQDLTSNVQQIGIHLSTDFFLPFE 157

HSP 2 Score: 41.2022 bits (95), Expect = 1.572e-14
Identity = 18/20 (90.00%), Postives = 18/20 (90.00%), Query Frame = 3 
Query:    3 SLITTILDTSWYGIIWTTPS 62
            SLI TILDTSWYGIIWTT S
Sbjct:  110 SLIATILDTSWYGIIWTTRS 129
[Close]
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_ARAHI (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Arabis hirsuta GN=ndhG PE=3 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 2.656e-14
Identity = 28/36 (77.78%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    R NQI+EQDLISNSQQIG HLSTDFFLPFE
Sbjct:  122 GVIWTTRLNQILEQDLISNSQQIGSHLSTDFFLPFE 157

HSP 2 Score: 40.4318 bits (93), Expect = 2.656e-14
Identity = 16/18 (88.89%), Postives = 18/18 (100.00%), Query Frame = 3 
Query:    3 SLITTILDTSWYGIIWTT 56
            SLI+TILDTSWYG+IWTT
Sbjct:  110 SLISTILDTSWYGVIWTT 127
[Close]
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_OLIPU (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Olimarabidopsis pumila GN=ndhG PE=3 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 3.452e-14
Identity = 29/36 (80.56%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    R NQI+EQDLISNSQQIGIHLSTDFFLPFE
Sbjct:  122 GVIWTTRLNQILEQDLISNSQQIGIHLSTDFFLPFE 157

HSP 2 Score: 37.7354 bits (86), Expect = 3.452e-14
Identity = 14/17 (82.35%), Postives = 17/17 (100.00%), Query Frame = 3 
Query:    6 LITTILDTSWYGIIWTT 56
            L++TILDTSWYG+IWTT
Sbjct:  111 LMSTILDTSWYGVIWTT 127
[Close]
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_CRUWA (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Crucihimalaya wallichii GN=ndhG PE=3 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 3.452e-14
Identity = 29/36 (80.56%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    R NQI+EQDLISNSQQIGIHLSTDFFLPFE
Sbjct:  122 GVIWTTRLNQILEQDLISNSQQIGIHLSTDFFLPFE 157

HSP 2 Score: 37.7354 bits (86), Expect = 3.452e-14
Identity = 14/17 (82.35%), Postives = 17/17 (100.00%), Query Frame = 3 
Query:    6 LITTILDTSWYGIIWTT 56
            L++TILDTSWYG+IWTT
Sbjct:  111 LMSTILDTSWYGVIWTT 127
[Close]
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU6C_JASNU (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Jasminum nudiflorum GN=ndhG PE=3 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 3.452e-14
Identity = 27/36 (75.00%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:   40 GLFGLHRANQIIEQDLISNSQQIGIHLSTDFFLPFE 147
            G+    ++NQIIE+DLISNSQQIGIHL TDFFLPFE
Sbjct:  122 GIIWTTKSNQIIEKDLISNSQQIGIHLVTDFFLPFE 157

HSP 2 Score: 40.817 bits (94), Expect = 3.452e-14
Identity = 18/20 (90.00%), Postives = 18/20 (90.00%), Query Frame = 3 
Query:    3 SLITTILDTSWYGIIWTTPS 62
            SLITTI DTSWYGIIWTT S
Sbjct:  110 SLITTIPDTSWYGIIWTTKS 129
The following BLAST results are available for this feature:
BLAST of DR908612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 160
Match NameE-valueIdentityDescription
NU6C_MORIN9.316e-1580.56NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_LEPVR9.316e-1580.56NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_LOBMA9.316e-1577.78NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_NASOF1.211e-1480.56NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_BARVE1.211e-1480.56NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_AMBTC1.572e-1477.78NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_ARAHI2.656e-1477.78NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_OLIPU3.452e-1480.56NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_CRUWA3.452e-1480.56NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
NU6C_JASNU3.452e-1475.00NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16740 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-11_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908612 ID=DR908612; Name=DR908612; organism=Citrus sinensis; type=EST; length=607bp
TTTCGCTAATCACTACTATTCTCGATACATCGTGGTACGGGATTATTTGG
ACTACACCGAGCCAACCAGATTATTGAACAAGATTTGATAAGTAATAGTC
AACAAATTGGAATTCATTTATCAACAGACTTTTTTCTTCCATTTGAACTC
GTTTCAATAATTCTTTTAGTTGCTTTAATAGGTGCAATTGCCGTGGCGCG
TCAATAACAAATCTTTATAACTAGGAACAGCAATCCCAATTCGACTTTTT
ATGTGTTATCACATTCATTATGTGTTATCACATTCATTTCCCTTAAATTC
TTGTAAAGTCTAGTTGAATACTATTCACAGATCAATAGAAAATCAAAATA
GAATTTTTTTTATTCGATCTATTACCAAATGGATTCTTTTGTTCCGTACC
TGGTATATTCTAAGCAACCAAATCACTTGCATTATTATTATTGTTCAGAT
TGAAATGAATCGAAATTGGTACGGAGTTGGTTAATGATGCTCGAGCATGT
ACTTGTTTTGAGTGCCTATTTATTTTCGATTGGCATCTATGGCTTGATTA
CCAGCCGAAATATGGGTCGGGCCCTGATGTGCCTTGAACTTATACTAAAT
GCAGTTA
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