DR908612

Overview
NameDR908612
Unique NameDR908612
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU4LC_VITVI (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Vitis vinifera GN=ndhE PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.659e-14
Identity = 40/41 (97.56%), Postives = 40/41 (97.56%), Query Frame = 1 
Query:  484 MMLEHVLVLSAYLFSIGIYGLITSRNMGRALMCLELILNAV 606
            MMLEHVLVLSAYLFSIGIYGLITSRNM RALMCLELILNAV
Sbjct:    1 MMLEHVLVLSAYLFSIGIYGLITSRNMVRALMCLELILNAV 41
[Close]
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU4LC_NYMAL (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Nymphaea alba GN=ndhE PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.659e-14
Identity = 40/41 (97.56%), Postives = 40/41 (97.56%), Query Frame = 1 
Query:  484 MMLEHVLVLSAYLFSIGIYGLITSRNMGRALMCLELILNAV 606
            MMLEHVLVLSAYLFSIGIYGLITSRNM RALMCLELILNAV
Sbjct:    1 MMLEHVLVLSAYLFSIGIYGLITSRNMVRALMCLELILNAV 41
[Close]
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU4LC_NUPAD (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Nuphar advena GN=ndhE PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.659e-14
Identity = 40/41 (97.56%), Postives = 40/41 (97.56%), Query Frame = 1 
Query:  484 MMLEHVLVLSAYLFSIGIYGLITSRNMGRALMCLELILNAV 606
            MMLEHVLVLSAYLFSIGIYGLITSRNM RALMCLELILNAV
Sbjct:    1 MMLEHVLVLSAYLFSIGIYGLITSRNMVRALMCLELILNAV 41
[Close]
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU4LC_MORIN (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Morus indica GN=ndhE PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.659e-14
Identity = 40/41 (97.56%), Postives = 40/41 (97.56%), Query Frame = 1 
Query:  484 MMLEHVLVLSAYLFSIGIYGLITSRNMGRALMCLELILNAV 606
            MMLEHVLVLSAYLFSIGIYGLITSRNM RALMCLELILNAV
Sbjct:    1 MMLEHVLVLSAYLFSIGIYGLITSRNMVRALMCLELILNAV 41
[Close]
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU4LC_MANES (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Manihot esculenta GN=ndhE PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.659e-14
Identity = 40/41 (97.56%), Postives = 40/41 (97.56%), Query Frame = 1 
Query:  484 MMLEHVLVLSAYLFSIGIYGLITSRNMGRALMCLELILNAV 606
            MMLEHVLVLSAYLFSIGIYGLITSRNM RALMCLELILNAV
Sbjct:    1 MMLEHVLVLSAYLFSIGIYGLITSRNMVRALMCLELILNAV 41
[Close]
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU4LC_LOTJA (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Lotus japonicus GN=ndhE PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.659e-14
Identity = 40/41 (97.56%), Postives = 40/41 (97.56%), Query Frame = 1 
Query:  484 MMLEHVLVLSAYLFSIGIYGLITSRNMGRALMCLELILNAV 606
            MMLEHVLVLSAYLFSIGIYGLITSRNM RALMCLELILNAV
Sbjct:    1 MMLEHVLVLSAYLFSIGIYGLITSRNMVRALMCLELILNAV 41
[Close]
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU4LC_ILLOL (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Illicium oligandrum GN=ndhE PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.659e-14
Identity = 40/41 (97.56%), Postives = 40/41 (97.56%), Query Frame = 1 
Query:  484 MMLEHVLVLSAYLFSIGIYGLITSRNMGRALMCLELILNAV 606
            MMLEHVLVLSAYLFSIGIYGLITSRNM RALMCLELILNAV
Sbjct:    1 MMLEHVLVLSAYLFSIGIYGLITSRNMVRALMCLELILNAV 41
[Close]
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU4LC_COFAR (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Coffea arabica GN=ndhE PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.659e-14
Identity = 40/41 (97.56%), Postives = 40/41 (97.56%), Query Frame = 1 
Query:  484 MMLEHVLVLSAYLFSIGIYGLITSRNMGRALMCLELILNAV 606
            MMLEHVLVLSAYLFSIGIYGLITSRNM RALMCLELILNAV
Sbjct:    1 MMLEHVLVLSAYLFSIGIYGLITSRNMVRALMCLELILNAV 41
[Close]
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU4LC_CITSI (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Citrus sinensis GN=ndhE PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.659e-14
Identity = 40/41 (97.56%), Postives = 40/41 (97.56%), Query Frame = 1 
Query:  484 MMLEHVLVLSAYLFSIGIYGLITSRNMGRALMCLELILNAV 606
            MMLEHVLVLSAYLFSIGIYGLITSRNM RALMCLELILNAV
Sbjct:    1 MMLEHVLVLSAYLFSIGIYGLITSRNMVRALMCLELILNAV 41
[Close]
BLAST of DR908612 vs. ExPASy Swiss-Prot
Match: NU4LC_CICAR (NAD(P)H-quinone oxidoreductase subunit 4L, chloroplastic OS=Cicer arietinum GN=ndhE PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.659e-14
Identity = 40/41 (97.56%), Postives = 40/41 (97.56%), Query Frame = 1 
Query:  484 MMLEHVLVLSAYLFSIGIYGLITSRNMGRALMCLELILNAV 606
            MMLEHVLVLSAYLFSIGIYGLITSRNM RALMCLELILNAV
Sbjct:    1 MMLEHVLVLSAYLFSIGIYGLITSRNMVRALMCLELILNAV 41
The following BLAST results are available for this feature:
BLAST of DR908612 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 160
Match NameE-valueIdentityDescription
NU4LC_VITVI3.659e-1497.56NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]
NU4LC_NYMAL3.659e-1497.56NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]
NU4LC_NUPAD3.659e-1497.56NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]
NU4LC_MORIN3.659e-1497.56NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]
NU4LC_MANES3.659e-1497.56NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]
NU4LC_LOTJA3.659e-1497.56NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]
NU4LC_ILLOL3.659e-1497.56NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]
NU4LC_COFAR3.659e-1497.56NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]
NU4LC_CITSI3.659e-1497.56NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]
NU4LC_CICAR3.659e-1497.56NAD(P)H-quinone oxidoreductase subunit 4L, chlorop... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16740 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-11_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908612 ID=DR908612; Name=DR908612; organism=Citrus sinensis; type=EST; length=607bp
TTTCGCTAATCACTACTATTCTCGATACATCGTGGTACGGGATTATTTGG
ACTACACCGAGCCAACCAGATTATTGAACAAGATTTGATAAGTAATAGTC
AACAAATTGGAATTCATTTATCAACAGACTTTTTTCTTCCATTTGAACTC
GTTTCAATAATTCTTTTAGTTGCTTTAATAGGTGCAATTGCCGTGGCGCG
TCAATAACAAATCTTTATAACTAGGAACAGCAATCCCAATTCGACTTTTT
ATGTGTTATCACATTCATTATGTGTTATCACATTCATTTCCCTTAAATTC
TTGTAAAGTCTAGTTGAATACTATTCACAGATCAATAGAAAATCAAAATA
GAATTTTTTTTATTCGATCTATTACCAAATGGATTCTTTTGTTCCGTACC
TGGTATATTCTAAGCAACCAAATCACTTGCATTATTATTATTGTTCAGAT
TGAAATGAATCGAAATTGGTACGGAGTTGGTTAATGATGCTCGAGCATGT
ACTTGTTTTGAGTGCCTATTTATTTTCGATTGGCATCTATGGCTTGATTA
CCAGCCGAAATATGGGTCGGGCCCTGATGTGCCTTGAACTTATACTAAAT
GCAGTTA
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